Wall clock time and date at job start Sat Apr 11 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47504 * 2 1 4 4 H 1.09005 * 109.47692 * 302.97021 * 3 2 1 5 5 C 1.52999 * 109.47317 * 182.96504 * 3 2 1 6 6 N 1.46504 * 109.47114 * 185.00086 * 5 3 2 7 7 C 1.34782 * 119.99624 * 179.72852 * 6 5 3 8 8 O 1.21277 * 120.00362 * 0.27270 * 7 6 5 9 9 C 1.50704 * 119.99497 * 180.28037 * 7 6 5 10 10 C 1.50708 * 109.46666 * 179.97438 * 9 7 6 11 11 C 1.33637 * 122.74719 * 124.73321 * 10 9 7 12 12 S 1.76195 * 107.92244 * 179.97438 * 11 10 9 13 13 C 1.70983 * 90.28262 * 0.27518 * 12 11 10 14 14 N 1.29026 * 110.16351 * 359.83772 * 13 12 11 15 15 N 1.46900 * 109.46936 * 62.96910 * 3 2 1 16 16 C 1.46907 * 111.00030 * 65.52015 * 15 3 2 17 17 C 1.50700 * 109.47065 * 182.18304 * 16 15 3 18 18 O 1.21292 * 120.00112 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99640 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99578 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00250 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99741 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00354 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00068 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46685 * 90.00405 * 24 22 20 26 26 H 1.48496 * 109.47035 * 210.00392 * 24 22 20 27 27 H 1.48501 * 109.46819 * 330.00484 * 24 22 20 28 28 H 1.08998 * 109.47493 * 54.76796 * 1 2 3 29 29 H 1.09001 * 109.47810 * 174.77357 * 1 2 3 30 30 H 1.09009 * 109.46968 * 294.77643 * 1 2 3 31 31 H 1.09007 * 109.46633 * 240.00508 * 2 1 3 32 32 H 1.09004 * 109.47273 * 120.01046 * 2 1 3 33 33 H 1.09010 * 109.46792 * 65.00627 * 5 3 2 34 34 H 1.08994 * 109.47426 * 305.00788 * 5 3 2 35 35 H 0.96992 * 119.99829 * 0.02562 * 6 5 3 36 36 H 1.09003 * 109.46779 * 299.99372 * 9 7 6 37 37 H 1.08995 * 109.47388 * 60.00037 * 9 7 6 38 38 H 1.08001 * 126.03900 * 0.02982 * 11 10 9 39 39 H 1.08001 * 124.91318 * 179.84044 * 13 12 11 40 40 H 1.00905 * 111.00340 * 189.47402 * 15 3 2 41 41 H 1.09001 * 109.46849 * 302.18838 * 16 15 3 42 42 H 1.08999 * 109.46704 * 62.18461 * 16 15 3 43 43 H 0.97000 * 120.00147 * 359.97438 * 19 17 16 44 44 H 0.96992 * 120.00447 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6339 1.9715 -0.8622 5 6 3.5682 1.4430 -0.0746 6 7 4.0625 2.8169 0.0455 7 6 5.3874 3.0617 0.0121 8 8 6.1703 2.1452 -0.1225 9 6 5.8961 4.4743 0.1420 10 6 7.4017 4.4742 0.0745 11 6 8.0859 5.2100 -0.8066 12 16 9.8027 4.9153 -0.5420 13 6 9.4296 3.8257 0.7217 14 7 8.1511 3.7437 0.8752 15 7 1.6098 2.1139 1.2337 16 6 2.2441 1.5074 2.4118 17 6 1.7390 2.1855 3.6593 18 8 0.9298 3.0852 3.5752 19 7 2.1863 1.7922 4.8683 20 6 1.7264 2.4088 6.0031 21 1 1.0053 3.2094 5.9283 22 6 2.1872 2.0030 7.2496 23 7 3.0642 1.0286 7.3407 24 14 1.5610 2.8436 8.7959 25 1 0.3519 2.1363 9.2886 26 1 2.6158 2.8075 9.8406 27 1 1.2178 4.2551 8.4875 28 1 -0.3634 0.5928 -0.8394 29 1 -0.3635 -1.0234 -0.0936 30 1 -0.3633 0.4307 0.9331 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5140 0.8899 33 1 3.8855 1.0250 -1.0301 34 1 3.9719 0.8392 0.7380 35 1 3.4364 3.5498 0.1535 36 1 5.4957 5.0808 -0.6704 37 1 5.5757 4.8895 1.0975 38 1 7.6614 5.8696 -1.5491 39 1 10.1585 3.2846 1.3067 40 1 1.7985 3.1042 1.1911 41 1 1.9989 0.4460 2.4505 42 1 3.3253 1.6283 2.3450 43 1 2.8331 1.0725 4.9355 44 1 3.3862 0.7456 8.2108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732224027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:20 Heat of formation + Delta-G solvation = -25.258070 kcal Electronic energy + Delta-G solvation = -26971.008122 eV Core-core repulsion = 23050.330024 eV Total energy + Delta-G solvation = -3920.678098 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48994 -39.43877 -38.40711 -37.19333 -34.05286 -33.83896 -32.41139 -31.95007 -31.16564 -29.26427 -27.90456 -26.42291 -25.09549 -24.22832 -23.25826 -20.85215 -20.27935 -19.68392 -19.06945 -18.38881 -17.89277 -17.18306 -16.77348 -16.21687 -15.83596 -15.52034 -15.25148 -14.64831 -14.50352 -14.28717 -14.13306 -13.80078 -13.72752 -13.48350 -13.46418 -13.34609 -13.21590 -12.73033 -12.35356 -12.13792 -11.88867 -11.70791 -11.57377 -11.42919 -11.26173 -11.01995 -10.85243 -10.56685 -10.38315 -10.19843 -9.97142 -9.75683 -9.61859 -9.48880 -9.15254 -9.04412 -8.47955 -8.07660 -7.93984 -6.39300 -3.80384 0.52002 1.19063 1.50682 2.56479 2.62120 3.16937 3.19151 3.27595 3.33149 3.92735 3.96948 4.10666 4.33542 4.60789 4.66182 4.75641 4.87892 4.95333 5.02208 5.13658 5.19828 5.21839 5.28362 5.37781 5.43380 5.53694 5.62791 5.79327 5.82310 5.87460 5.94159 6.01723 6.09683 6.24246 6.32486 6.33165 6.55553 7.14997 7.36502 7.56576 7.56952 7.59516 8.07995 8.18100 8.63110 9.19761 9.56695 10.07762 10.78346 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008129 B = 0.002991 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3443.571017 B = 9359.814345 C =12065.138386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.088 0.912 5 C 0.082 3.918 6 N -0.731 5.731 7 C 0.519 3.481 8 O -0.521 6.521 9 C -0.070 4.070 10 C 0.087 3.913 11 C -0.255 4.255 12 S 0.105 5.895 13 C 0.029 3.971 14 N -0.442 5.442 15 N -0.652 5.652 16 C 0.043 3.957 17 C 0.441 3.559 18 O -0.585 6.585 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.900 5.900 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.049 0.951 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.398 0.602 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.177 0.823 39 H 0.199 0.801 40 H 0.344 0.656 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.538 4.801 -19.386 22.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.106 0.894 5 C -0.044 4.044 6 N -0.385 5.385 7 C 0.304 3.696 8 O -0.396 6.396 9 C -0.113 4.113 10 C -0.046 4.046 11 C -0.394 4.394 12 S 0.357 5.643 13 C -0.270 4.270 14 N -0.154 5.154 15 N -0.284 5.284 16 C -0.089 4.089 17 C 0.227 3.773 18 O -0.469 6.469 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.128 0.872 37 H 0.133 0.867 38 H 0.195 0.805 39 H 0.216 0.784 40 H 0.164 0.836 41 H 0.106 0.894 42 H 0.066 0.934 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.823 4.270 -19.312 22.084 hybrid contribution -0.023 0.500 0.957 1.080 sum 9.800 4.770 -18.355 21.347 Atomic orbital electron populations 1.21616 0.94614 1.00553 1.03083 1.21502 0.97332 0.94360 1.01978 1.21977 0.90377 0.97178 0.93874 0.89373 1.22167 0.96383 0.83205 1.02603 1.45932 1.07147 1.09772 1.75654 1.20244 0.82054 0.90846 0.76419 1.90734 1.55336 1.46017 1.47509 1.20256 0.89298 0.95869 1.05840 1.19627 0.96288 0.95112 0.93577 1.26772 0.95615 1.09678 1.07315 1.83958 1.06820 1.40516 1.33022 1.28445 0.95525 1.02032 1.00974 1.66036 1.03744 1.20177 1.25459 1.60223 1.60864 1.07380 0.99939 1.21777 0.96678 0.99988 0.90466 1.19791 0.86132 0.87061 0.84321 1.90513 1.36795 1.33092 1.86537 1.41870 1.39705 1.33719 1.04651 1.19684 1.23416 1.16674 0.83130 0.87955 1.25266 0.96562 0.96732 0.99374 1.69614 1.30634 1.28013 1.25898 0.85871 0.78195 0.79654 0.80635 1.20406 1.20946 1.19434 0.93218 0.93562 0.91013 0.91861 0.91468 0.91340 0.90888 0.76695 0.87185 0.86711 0.80517 0.78395 0.83602 0.89374 0.93424 0.77495 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.71 37.16 0.36 -1.25 16 2 C -0.11 -1.23 5.28 -26.74 -0.14 -1.38 16 3 C 0.08 0.85 2.73 -67.72 -0.18 0.67 16 4 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 5 C 0.08 0.96 4.47 -4.04 -0.02 0.94 16 6 N -0.73 -8.15 5.32 -60.29 -0.32 -8.47 16 7 C 0.52 6.84 7.80 -10.98 -0.09 6.76 16 8 O -0.52 -9.07 15.44 5.56 0.09 -8.98 16 9 C -0.07 -0.71 6.19 -29.03 -0.18 -0.89 16 10 C 0.09 1.03 5.64 -84.23 -0.47 0.56 16 11 C -0.25 -2.34 11.07 29.12 0.32 -2.02 16 12 S 0.10 0.87 23.22 -107.50 -2.50 -1.63 16 13 C 0.03 0.31 12.23 51.58 0.63 0.94 16 14 N -0.44 -6.19 9.68 -11.89 -0.12 -6.30 16 15 N -0.65 -9.45 5.38 -107.99 -0.58 -10.03 16 16 C 0.04 0.75 5.32 -4.97 -0.03 0.72 16 17 C 0.44 10.30 7.82 -10.99 -0.09 10.21 16 18 O -0.58 -15.50 15.83 5.55 0.09 -15.41 16 19 N -0.56 -14.40 5.29 -10.96 -0.06 -14.45 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 1.01 7.85 -51.92 -0.41 0.60 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 33 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.07 1.01 6.69 -51.93 -0.35 0.67 16 35 H 0.40 3.63 7.23 -40.82 -0.30 3.34 16 36 H 0.11 0.69 8.03 -51.93 -0.42 0.28 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.34 4.94 7.24 -39.29 -0.28 4.65 16 41 H 0.09 1.45 6.29 -51.93 -0.33 1.13 16 42 H 0.05 0.81 6.41 -51.93 -0.33 0.48 16 43 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -35.81 381.95 -8.02 -43.83 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -5.96 Total: 16.41 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -0.12 Total: 7.24 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.35 Total: -63.43 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: 0.17 Total: -24.39 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 0.87 SS G_CDS: -2.50 Total: -1.63 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.81 -8.02 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732224027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.576 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds