Wall clock time and date at job start Sat Apr 11 2020 05:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47504 * 2 1 4 4 H 1.09005 * 109.47692 * 302.97021 * 3 2 1 5 5 C 1.52999 * 109.47317 * 182.96504 * 3 2 1 6 6 N 1.46504 * 109.47114 * 185.00086 * 5 3 2 7 7 C 1.34782 * 119.99624 * 179.72852 * 6 5 3 8 8 O 1.21277 * 120.00362 * 0.27270 * 7 6 5 9 9 C 1.50704 * 119.99497 * 180.28037 * 7 6 5 10 10 C 1.50708 * 109.46666 * 179.97438 * 9 7 6 11 11 C 1.33637 * 122.74719 * 124.73321 * 10 9 7 12 12 S 1.76195 * 107.92244 * 179.97438 * 11 10 9 13 13 C 1.70983 * 90.28262 * 0.27518 * 12 11 10 14 14 N 1.29026 * 110.16351 * 359.83772 * 13 12 11 15 15 N 1.46900 * 109.46936 * 62.96910 * 3 2 1 16 16 C 1.46907 * 111.00030 * 65.52015 * 15 3 2 17 17 C 1.50700 * 109.47065 * 182.18304 * 16 15 3 18 18 O 1.21292 * 120.00112 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99640 * 180.02562 * 17 16 15 20 20 C 1.37099 * 119.99578 * 180.02562 * 19 17 16 21 21 H 1.08004 * 120.00250 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99741 * 179.97438 * 20 19 17 23 23 N 1.31415 * 120.00354 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00068 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46685 * 90.00405 * 24 22 20 26 26 H 1.48496 * 109.47035 * 210.00392 * 24 22 20 27 27 H 1.48501 * 109.46819 * 330.00484 * 24 22 20 28 28 H 1.08998 * 109.47493 * 54.76796 * 1 2 3 29 29 H 1.09001 * 109.47810 * 174.77357 * 1 2 3 30 30 H 1.09009 * 109.46968 * 294.77643 * 1 2 3 31 31 H 1.09007 * 109.46633 * 240.00508 * 2 1 3 32 32 H 1.09004 * 109.47273 * 120.01046 * 2 1 3 33 33 H 1.09010 * 109.46792 * 65.00627 * 5 3 2 34 34 H 1.08994 * 109.47426 * 305.00788 * 5 3 2 35 35 H 0.96992 * 119.99829 * 0.02562 * 6 5 3 36 36 H 1.09003 * 109.46779 * 299.99372 * 9 7 6 37 37 H 1.08995 * 109.47388 * 60.00037 * 9 7 6 38 38 H 1.08001 * 126.03900 * 0.02982 * 11 10 9 39 39 H 1.08001 * 124.91318 * 179.84044 * 13 12 11 40 40 H 1.00905 * 111.00340 * 189.47402 * 15 3 2 41 41 H 1.09001 * 109.46849 * 302.18838 * 16 15 3 42 42 H 1.08999 * 109.46704 * 62.18461 * 16 15 3 43 43 H 0.97000 * 120.00147 * 359.97438 * 19 17 16 44 44 H 0.96992 * 120.00447 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6339 1.9715 -0.8622 5 6 3.5682 1.4430 -0.0746 6 7 4.0625 2.8169 0.0455 7 6 5.3874 3.0617 0.0121 8 8 6.1703 2.1452 -0.1225 9 6 5.8961 4.4743 0.1420 10 6 7.4017 4.4742 0.0745 11 6 8.0859 5.2100 -0.8066 12 16 9.8027 4.9153 -0.5420 13 6 9.4296 3.8257 0.7217 14 7 8.1511 3.7437 0.8752 15 7 1.6098 2.1139 1.2337 16 6 2.2441 1.5074 2.4118 17 6 1.7390 2.1855 3.6593 18 8 0.9298 3.0852 3.5752 19 7 2.1863 1.7922 4.8683 20 6 1.7264 2.4088 6.0031 21 1 1.0053 3.2094 5.9283 22 6 2.1872 2.0030 7.2496 23 7 3.0642 1.0286 7.3407 24 14 1.5610 2.8436 8.7959 25 1 0.3519 2.1363 9.2886 26 1 2.6158 2.8075 9.8406 27 1 1.2178 4.2551 8.4875 28 1 -0.3634 0.5928 -0.8394 29 1 -0.3635 -1.0234 -0.0936 30 1 -0.3633 0.4307 0.9331 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5140 0.8899 33 1 3.8855 1.0250 -1.0301 34 1 3.9719 0.8392 0.7380 35 1 3.4364 3.5498 0.1535 36 1 5.4957 5.0808 -0.6704 37 1 5.5757 4.8895 1.0975 38 1 7.6614 5.8696 -1.5491 39 1 10.1585 3.2846 1.3067 40 1 1.7985 3.1042 1.1911 41 1 1.9989 0.4460 2.4505 42 1 3.3253 1.6283 2.3450 43 1 2.8331 1.0725 4.9355 44 1 3.3862 0.7456 8.2108 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732224027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:19 Heat of formation + Delta-G solvation = -54.062733 kcal Electronic energy + Delta-G solvation = -26972.257186 eV Core-core repulsion = 23050.330024 eV Total energy + Delta-G solvation = -3921.927162 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.38440 -40.53436 -39.90468 -38.52577 -35.96391 -34.98952 -33.35170 -33.20291 -32.99513 -30.19841 -28.95167 -27.83359 -26.11044 -25.79948 -24.18431 -21.90398 -21.55305 -20.64959 -20.40644 -19.86406 -19.17395 -18.38816 -17.97765 -17.12418 -17.02814 -16.80011 -16.45546 -16.19164 -15.87770 -15.69684 -15.39239 -15.11922 -14.77302 -14.61329 -14.46723 -14.15286 -14.11481 -13.99415 -13.74509 -13.47960 -13.25092 -13.08166 -12.87945 -12.62128 -12.41747 -12.38020 -12.24405 -12.12699 -11.78906 -11.54035 -11.48921 -10.99151 -10.53160 -10.36574 -10.34703 -10.13960 -10.02003 -9.76108 -9.36252 -8.46608 -5.95835 -0.19902 0.52657 0.78519 1.37519 1.40723 1.53926 1.63981 1.74862 2.04711 2.26456 2.30838 2.93523 3.20432 3.27464 3.52066 3.72941 3.85091 3.98162 4.08355 4.19805 4.24286 4.30899 4.39112 4.42229 4.45874 4.49822 4.56698 4.68377 4.69827 4.73177 4.95824 4.99519 5.14178 5.19921 5.36338 5.40153 5.40278 5.58595 5.86866 6.07185 6.40011 6.47924 6.58554 6.86513 7.11879 7.23540 7.55581 8.09852 8.70956 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008129 B = 0.002991 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3443.571017 B = 9359.814345 C =12065.138386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 C 0.088 3.912 4 H 0.115 0.885 5 C 0.088 3.912 6 N -0.722 5.722 7 C 0.514 3.486 8 O -0.569 6.569 9 C -0.066 4.066 10 C 0.052 3.948 11 C -0.249 4.249 12 S 0.160 5.840 13 C 0.004 3.996 14 N -0.495 5.495 15 N -0.658 5.658 16 C 0.065 3.935 17 C 0.441 3.559 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.082 0.918 22 C -0.016 4.016 23 N -0.923 5.923 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.273 1.273 27 H -0.270 1.270 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.410 0.590 36 H 0.151 0.849 37 H 0.115 0.885 38 H 0.209 0.791 39 H 0.214 0.786 40 H 0.346 0.654 41 H 0.098 0.902 42 H 0.053 0.947 43 H 0.393 0.607 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.655 5.770 -21.009 23.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.153 4.153 3 C -0.022 4.022 4 H 0.133 0.867 5 C -0.038 4.038 6 N -0.376 5.376 7 C 0.301 3.699 8 O -0.448 6.448 9 C -0.108 4.108 10 C -0.081 4.081 11 C -0.389 4.389 12 S 0.412 5.588 13 C -0.293 4.293 14 N -0.209 5.209 15 N -0.290 5.290 16 C -0.068 4.068 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.100 0.900 22 C -0.215 4.215 23 N -0.564 5.564 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.194 1.194 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.247 0.753 36 H 0.169 0.831 37 H 0.133 0.867 38 H 0.226 0.774 39 H 0.230 0.770 40 H 0.166 0.834 41 H 0.116 0.884 42 H 0.071 0.929 43 H 0.226 0.774 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.930 5.245 -20.954 23.774 hybrid contribution -0.028 0.210 1.347 1.363 sum 9.902 5.456 -19.607 22.633 Atomic orbital electron populations 1.21564 0.94851 1.01169 1.01882 1.21541 0.96999 0.94163 1.02549 1.22041 0.89917 0.97437 0.92833 0.86704 1.22074 0.96450 0.83276 1.02033 1.45888 1.06987 1.09979 1.74719 1.20843 0.82057 0.91726 0.75295 1.90706 1.56537 1.47658 1.49862 1.20357 0.88852 0.94220 1.07401 1.19925 0.97060 0.96355 0.94721 1.27221 0.96215 1.08768 1.06664 1.83706 1.05759 1.38455 1.30874 1.28781 0.95238 1.03015 1.02300 1.66039 1.05338 1.22045 1.27501 1.60213 1.60920 1.07665 1.00204 1.21507 0.96667 0.99833 0.88763 1.20796 0.84803 0.86212 0.85341 1.90481 1.38054 1.34498 1.87265 1.41974 1.40213 1.34031 1.05075 1.19680 1.24321 1.17328 0.84759 0.90013 1.26085 0.96407 0.97129 1.01884 1.69690 1.31125 1.28718 1.26894 0.84917 0.78024 0.78480 0.76868 1.19598 1.19748 1.19443 0.91905 0.92603 0.94141 0.89403 0.92845 0.90545 0.93351 0.75347 0.83108 0.86739 0.77370 0.76962 0.83418 0.88359 0.92942 0.77398 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.71 71.98 0.70 -2.20 16 2 C -0.11 -2.27 5.28 30.59 0.16 -2.11 16 3 C 0.09 1.77 2.73 44.91 0.12 1.89 16 4 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 5 C 0.09 1.94 4.47 86.38 0.39 2.33 16 6 N -0.72 -15.28 5.32 -463.04 -2.46 -17.74 16 7 C 0.51 13.34 7.80 87.66 0.68 14.02 16 8 O -0.57 -20.16 15.44 -3.02 -0.05 -20.20 16 9 C -0.07 -1.27 6.19 29.11 0.18 -1.09 16 10 C 0.05 1.19 5.64 41.53 0.23 1.43 16 11 C -0.25 -4.07 11.07 66.78 0.74 -3.33 16 12 S 0.16 2.38 23.22 -56.49 -1.31 1.07 16 13 C 0.00 0.09 12.23 130.65 1.60 1.69 16 14 N -0.50 -14.14 9.68 -191.54 -1.85 -15.99 16 15 N -0.66 -18.43 5.38 -495.57 -2.66 -21.10 16 16 C 0.06 2.24 5.32 85.56 0.46 2.69 16 17 C 0.44 20.99 7.82 87.66 0.69 21.68 16 18 O -0.62 -33.31 15.83 -3.07 -0.05 -33.36 16 19 N -0.58 -30.29 5.29 -306.98 -1.62 -31.91 16 20 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 21 H 0.08 4.96 7.16 -2.91 -0.02 4.94 16 22 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 23 N -0.92 -51.40 13.05 21.66 0.28 -51.11 16 24 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 25 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.04 1.11 7.85 -2.38 -0.02 1.09 16 31 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.05 1.22 6.36 -2.38 -0.02 1.20 16 33 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.05 1.34 6.69 -2.39 -0.02 1.32 16 35 H 0.41 6.78 7.23 -92.71 -0.67 6.11 16 36 H 0.15 1.48 8.03 -2.39 -0.02 1.46 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.21 1.81 8.06 -2.91 -0.02 1.78 16 39 H 0.21 3.34 8.06 -2.91 -0.02 3.32 16 40 H 0.35 9.54 7.24 -89.69 -0.65 8.89 16 41 H 0.10 3.24 6.29 -2.39 -0.02 3.23 16 42 H 0.05 1.79 6.41 -2.39 -0.02 1.78 16 43 H 0.39 20.16 7.90 -92.71 -0.73 19.43 16 44 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -80.17 381.95 -1.46 -81.63 By element: Atomic # 1 Polarization: 45.72 SS G_CDS: -0.99 Total: 44.74 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 7.23 Total: 18.36 kcal Atomic # 7 Polarization: -129.53 SS G_CDS: -8.32 Total: -137.85 kcal Atomic # 8 Polarization: -53.47 SS G_CDS: -0.10 Total: -53.57 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.31 Total: 1.07 kcal Total: -80.17 -1.46 -81.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732224027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.564 kcal (2) G-P(sol) polarization free energy of solvation -80.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds