Wall clock time and date at job start Sat Apr 11 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29420 * 124.80563 * 2 1 4 4 C 1.30944 * 117.36333 * 180.02562 * 3 2 1 5 5 C 1.35665 * 114.19167 * 359.97438 * 4 3 2 6 6 C 1.46687 * 126.12841 * 180.02562 * 5 4 3 7 7 O 1.21685 * 120.00221 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99714 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00348 * 180.02562 * 8 6 5 10 10 H 1.09010 * 109.46775 * 34.99870 * 9 8 6 11 11 C 1.53003 * 109.46793 * 275.00487 * 9 8 6 12 12 C 1.52996 * 109.47845 * 154.99975 * 9 8 6 13 13 C 1.53001 * 109.46954 * 295.00204 * 12 9 8 14 14 N 1.46896 * 109.47209 * 179.97438 * 13 12 9 15 15 C 1.46897 * 111.00281 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47273 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00107 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00161 * 180.02562 * 18 16 15 20 20 H 1.08005 * 120.00234 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00188 * 179.97438 * 19 18 16 22 22 N 1.31406 * 119.99764 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99851 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47155 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46816 * 119.99851 * 23 21 19 26 26 H 1.48500 * 109.46777 * 239.99907 * 23 21 19 27 27 S 1.70950 * 124.80056 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46807 * 269.97463 * 1 2 3 29 29 H 1.09001 * 109.46824 * 29.97395 * 1 2 3 30 30 H 1.08997 * 109.47341 * 149.97987 * 1 2 3 31 31 H 1.07999 * 122.90370 * 180.27157 * 4 3 2 32 32 H 0.97006 * 119.99950 * 359.97438 * 8 6 5 33 33 H 1.08997 * 109.46838 * 299.98945 * 11 9 8 34 34 H 1.08993 * 109.47496 * 59.99580 * 11 9 8 35 35 H 1.09005 * 109.46508 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.46895 * 54.99580 * 12 9 8 37 37 H 1.08997 * 109.47296 * 175.00170 * 12 9 8 38 38 H 1.08995 * 109.47085 * 299.99610 * 13 12 9 39 39 H 1.09011 * 109.47085 * 59.99795 * 13 12 9 40 40 H 1.00901 * 110.99953 * 303.95565 * 14 13 12 41 41 H 1.08994 * 109.47289 * 300.00404 * 15 14 13 42 42 H 1.09003 * 109.47046 * 60.00335 * 15 14 13 43 43 H 0.97003 * 119.99806 * 359.97438 * 18 16 15 44 44 H 0.97003 * 119.99507 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5442 0.8931 -0.0005 5 6 3.9351 -0.4060 -0.0004 6 6 5.3189 -0.8928 -0.0004 7 8 6.2425 -0.1006 0.0000 8 7 5.5672 -2.2174 -0.0009 9 6 6.9492 -2.7037 -0.0003 10 1 7.5710 -2.0303 0.5899 11 6 7.4728 -2.7536 -1.4370 12 6 6.9961 -4.1064 0.6087 13 6 6.5911 -4.0364 2.0825 14 7 6.6356 -5.3833 2.6671 15 6 6.2523 -5.3547 4.0849 16 6 6.3091 -6.7511 4.6488 17 8 6.6370 -7.6787 3.9396 18 7 5.9954 -6.9692 5.9413 19 6 6.0475 -8.2394 6.4545 20 1 6.3395 -9.0654 5.8230 21 6 5.7247 -8.4641 7.7872 22 7 5.3699 -7.4590 8.5558 23 14 5.7950 -10.1950 8.4862 24 1 6.2191 -11.1413 7.4232 25 1 6.7701 -10.2376 9.6053 26 1 4.4511 -10.5822 8.9855 27 16 2.4827 -1.4037 -0.0006 28 1 -0.3633 -0.0005 1.0278 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 4.2433 1.7161 0.0037 32 1 4.8309 -2.8489 -0.0008 33 1 6.8511 -3.4269 -2.0271 34 1 7.4394 -1.7543 -1.8709 35 1 8.5012 -3.1150 -1.4365 36 1 6.3062 -4.7584 0.0729 37 1 8.0080 -4.5037 0.5285 38 1 7.2809 -3.3844 2.6183 39 1 5.5791 -3.6391 2.1627 40 1 6.0529 -6.0224 2.1475 41 1 6.9403 -4.7123 4.6344 42 1 5.2383 -4.9661 4.1795 43 1 5.7335 -6.2272 6.5087 44 1 5.1449 -7.6159 9.4862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732685560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:33 Heat of formation + Delta-G solvation = -37.635307 kcal Electronic energy + Delta-G solvation = -25822.843686 eV Core-core repulsion = 21901.628871 eV Total energy + Delta-G solvation = -3921.214815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.62392 -39.66195 -38.33672 -36.98969 -35.05351 -33.85022 -32.95240 -31.88135 -31.22986 -29.46001 -28.87643 -26.27404 -24.95983 -24.15534 -22.98307 -22.04057 -21.03933 -20.02875 -19.23558 -18.89364 -17.90669 -17.20224 -16.67829 -16.21969 -15.78681 -15.60505 -15.29089 -14.88647 -14.71330 -14.49993 -14.39007 -13.95040 -13.92339 -13.79511 -13.65383 -13.14279 -13.09204 -12.92770 -12.72074 -12.33563 -12.27798 -12.02211 -11.73273 -11.54174 -11.36558 -11.19941 -11.09395 -11.00395 -10.56635 -10.35640 -10.23932 -10.14864 -9.99085 -9.53739 -9.51792 -9.32508 -8.48686 -8.09210 -7.97738 -6.43334 -3.84183 -0.21927 0.67816 1.08859 2.02632 2.70898 2.81910 3.15109 3.25749 3.32986 3.59585 3.88714 4.00215 4.22397 4.40306 4.46500 4.72415 4.75171 4.83106 4.87830 4.92261 4.94859 5.13631 5.20084 5.25303 5.29467 5.31993 5.46308 5.47220 5.63525 5.69189 5.74094 5.85027 5.90281 5.96790 6.01916 6.18005 6.24935 7.00206 7.16448 7.17192 7.53916 7.62485 7.74868 8.04877 8.59496 9.16320 9.52652 10.03893 10.74500 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.002043 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.221042 B =13699.353658 C =15303.121181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.063 3.937 3 N -0.481 5.481 4 C 0.124 3.876 5 C -0.297 4.297 6 C 0.599 3.401 7 O -0.525 6.525 8 N -0.718 5.718 9 C 0.143 3.857 10 H 0.095 0.905 11 C -0.162 4.162 12 C -0.126 4.126 13 C 0.059 3.941 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 S 0.166 5.834 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.189 0.811 32 H 0.397 0.603 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.024 0.976 40 H 0.348 0.652 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 15.916 -19.257 26.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.212 4.212 3 N -0.196 5.196 4 C -0.034 4.034 5 C -0.421 4.421 6 C 0.384 3.616 7 O -0.402 6.402 8 N -0.369 5.369 9 C 0.039 3.961 10 H 0.113 0.887 11 C -0.221 4.221 12 C -0.164 4.164 13 C -0.071 4.071 14 N -0.301 5.301 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 S 0.422 5.578 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.206 0.794 32 H 0.232 0.768 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.042 0.958 40 H 0.167 0.833 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.263 15.260 -19.390 25.722 hybrid contribution -0.901 0.252 0.853 1.267 sum -8.165 15.512 -18.537 25.513 Atomic orbital electron populations 1.20576 0.84510 1.04756 1.04575 1.27543 1.02372 0.90944 1.00335 1.66247 1.04811 1.31138 1.17359 1.22209 0.90745 0.95555 0.94873 1.25783 0.97981 0.97925 1.20460 1.16685 0.85938 0.82660 0.76330 1.90850 1.44231 1.55161 1.49991 1.46058 1.09561 1.06117 1.75194 1.21085 0.81744 0.95920 0.97347 0.88746 1.22166 1.01668 1.02465 0.95777 1.21899 1.04385 0.94804 0.95302 1.21976 0.99307 0.91408 0.94414 1.60048 1.60365 1.07606 1.02080 1.21669 0.99217 0.97393 0.89918 1.19804 0.84501 0.89696 0.83388 1.90518 1.52608 1.44428 1.59219 1.41878 1.59428 1.10119 1.08633 1.19756 1.42948 0.85820 0.94315 0.87851 1.25275 0.97109 0.99522 0.96105 1.69621 1.46146 1.31057 1.07483 0.85797 0.77781 0.81862 0.78889 1.19199 1.20717 1.20767 1.83982 0.96567 1.11465 1.65780 0.88835 0.88741 0.89588 0.79432 0.76805 0.92341 0.92071 0.91038 0.91245 0.88744 0.90944 0.95768 0.83273 0.89607 0.93983 0.77461 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.46 36.01 0.38 0.03 16 2 C 0.06 0.47 7.38 -13.29 -0.10 0.37 16 3 N -0.48 -4.68 10.51 -11.50 -0.12 -4.80 16 4 C 0.12 1.22 11.09 -18.85 -0.21 1.01 16 5 C -0.30 -2.85 6.49 -37.09 -0.24 -3.09 16 6 C 0.60 6.53 7.75 -12.85 -0.10 6.43 16 7 O -0.52 -7.31 16.53 5.20 0.09 -7.22 16 8 N -0.72 -6.36 4.53 -55.11 -0.25 -6.61 16 9 C 0.14 1.28 2.57 -67.93 -0.17 1.11 16 10 H 0.09 0.99 7.58 -51.92 -0.39 0.59 16 11 C -0.16 -1.30 9.48 37.16 0.35 -0.95 16 12 C -0.13 -1.16 5.01 -26.73 -0.13 -1.29 16 13 C 0.06 0.68 5.57 -3.83 -0.02 0.66 16 14 N -0.67 -10.43 6.13 -115.06 -0.70 -11.14 16 15 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 16 C 0.44 10.38 7.82 -10.98 -0.09 10.29 16 17 O -0.58 -15.78 15.78 5.55 0.09 -15.69 16 18 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.65 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 S 0.17 1.16 22.31 -107.50 -2.40 -1.23 16 28 H 0.09 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.19 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.40 2.89 7.79 -40.82 -0.32 2.57 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.02 0.27 7.75 -51.92 -0.40 -0.14 16 40 H 0.35 5.48 8.43 -39.29 -0.33 5.15 16 41 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 44 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -34.13 392.50 -8.70 -42.83 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -6.35 Total: 12.72 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.61 Total: 7.44 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: -0.41 Total: -60.71 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.17 Total: -22.91 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -2.40 Total: -1.23 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.13 -8.70 -42.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732685560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.194 kcal (2) G-P(sol) polarization free energy of solvation -34.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds