Wall clock time and date at job start Sat Apr 11 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29420 * 124.80563 * 2 1 4 4 C 1.30944 * 117.36333 * 180.02562 * 3 2 1 5 5 C 1.35665 * 114.19167 * 359.97438 * 4 3 2 6 6 C 1.46687 * 126.12841 * 180.02562 * 5 4 3 7 7 O 1.21685 * 120.00221 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99714 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00348 * 180.02562 * 8 6 5 10 10 H 1.09010 * 109.46775 * 34.99870 * 9 8 6 11 11 C 1.53003 * 109.46793 * 275.00487 * 9 8 6 12 12 C 1.52996 * 109.47845 * 154.99975 * 9 8 6 13 13 C 1.53001 * 109.46954 * 295.00204 * 12 9 8 14 14 N 1.46896 * 109.47209 * 179.97438 * 13 12 9 15 15 C 1.46897 * 111.00281 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47273 * 179.97438 * 15 14 13 17 17 O 1.21286 * 120.00107 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00037 * 180.02562 * 16 15 14 19 19 C 1.37094 * 120.00161 * 180.02562 * 18 16 15 20 20 H 1.08005 * 120.00234 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00188 * 179.97438 * 19 18 16 22 22 N 1.31406 * 119.99764 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99851 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47155 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46816 * 119.99851 * 23 21 19 26 26 H 1.48500 * 109.46777 * 239.99907 * 23 21 19 27 27 S 1.70950 * 124.80056 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46807 * 269.97463 * 1 2 3 29 29 H 1.09001 * 109.46824 * 29.97395 * 1 2 3 30 30 H 1.08997 * 109.47341 * 149.97987 * 1 2 3 31 31 H 1.07999 * 122.90370 * 180.27157 * 4 3 2 32 32 H 0.97006 * 119.99950 * 359.97438 * 8 6 5 33 33 H 1.08997 * 109.46838 * 299.98945 * 11 9 8 34 34 H 1.08993 * 109.47496 * 59.99580 * 11 9 8 35 35 H 1.09005 * 109.46508 * 179.97438 * 11 9 8 36 36 H 1.09003 * 109.46895 * 54.99580 * 12 9 8 37 37 H 1.08997 * 109.47296 * 175.00170 * 12 9 8 38 38 H 1.08995 * 109.47085 * 299.99610 * 13 12 9 39 39 H 1.09011 * 109.47085 * 59.99795 * 13 12 9 40 40 H 1.00901 * 110.99953 * 303.95565 * 14 13 12 41 41 H 1.08994 * 109.47289 * 300.00404 * 15 14 13 42 42 H 1.09003 * 109.47046 * 60.00335 * 15 14 13 43 43 H 0.97003 * 119.99806 * 359.97438 * 18 16 15 44 44 H 0.97003 * 119.99507 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5442 0.8931 -0.0005 5 6 3.9351 -0.4060 -0.0004 6 6 5.3189 -0.8928 -0.0004 7 8 6.2425 -0.1006 0.0000 8 7 5.5672 -2.2174 -0.0009 9 6 6.9492 -2.7037 -0.0003 10 1 7.5710 -2.0303 0.5899 11 6 7.4728 -2.7536 -1.4370 12 6 6.9961 -4.1064 0.6087 13 6 6.5911 -4.0364 2.0825 14 7 6.6356 -5.3833 2.6671 15 6 6.2523 -5.3547 4.0849 16 6 6.3091 -6.7511 4.6488 17 8 6.6370 -7.6787 3.9396 18 7 5.9954 -6.9692 5.9413 19 6 6.0475 -8.2394 6.4545 20 1 6.3395 -9.0654 5.8230 21 6 5.7247 -8.4641 7.7872 22 7 5.3699 -7.4590 8.5558 23 14 5.7950 -10.1950 8.4862 24 1 6.2191 -11.1413 7.4232 25 1 6.7701 -10.2376 9.6053 26 1 4.4511 -10.5822 8.9855 27 16 2.4827 -1.4037 -0.0006 28 1 -0.3633 -0.0005 1.0278 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3634 -0.8898 -0.5141 31 1 4.2433 1.7161 0.0037 32 1 4.8309 -2.8489 -0.0008 33 1 6.8511 -3.4269 -2.0271 34 1 7.4394 -1.7543 -1.8709 35 1 8.5012 -3.1150 -1.4365 36 1 6.3062 -4.7584 0.0729 37 1 8.0080 -4.5037 0.5285 38 1 7.2809 -3.3844 2.6183 39 1 5.5791 -3.6391 2.1627 40 1 6.0529 -6.0224 2.1475 41 1 6.9403 -4.7123 4.6344 42 1 5.2383 -4.9661 4.1795 43 1 5.7335 -6.2272 6.5087 44 1 5.1449 -7.6159 9.4862 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732685560.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:32 Heat of formation + Delta-G solvation = -64.176095 kcal Electronic energy + Delta-G solvation = -25823.994581 eV Core-core repulsion = 21901.628871 eV Total energy + Delta-G solvation = -3922.365710 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.36829 -40.41203 -40.13734 -37.98472 -36.32647 -35.71735 -33.60897 -33.27745 -32.59511 -30.45489 -29.51777 -27.80214 -25.89139 -25.46206 -23.83330 -22.96946 -21.84431 -21.11038 -20.67278 -19.90723 -19.54035 -17.93902 -17.82443 -17.49237 -16.98416 -16.53435 -16.47486 -16.08829 -15.90328 -15.63462 -15.31796 -15.21137 -15.16297 -14.89484 -14.48687 -14.29413 -13.82975 -13.66361 -13.50386 -13.42778 -13.27779 -13.25118 -12.96976 -12.82789 -12.66645 -12.41445 -12.29212 -12.13026 -12.07406 -11.83372 -11.51794 -11.38694 -10.81450 -10.66170 -10.38287 -10.24506 -10.02377 -9.94294 -9.34047 -8.47305 -5.96116 -0.86886 0.08123 0.45962 1.31909 1.36744 1.42273 1.56536 1.96343 2.04002 2.04583 2.28830 2.86933 3.06781 3.20049 3.47283 3.68084 3.87729 3.94091 3.99574 4.15259 4.20443 4.29751 4.41117 4.44523 4.50925 4.58213 4.59148 4.64162 4.66202 4.77920 4.89683 4.93026 5.02793 5.13704 5.17311 5.29469 5.40933 5.42345 5.87228 6.08461 6.27571 6.42521 6.52419 6.59076 6.97311 7.11966 7.55297 8.10129 8.70377 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012358 B = 0.002043 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.221042 B =13699.353658 C =15303.121181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.061 3.939 3 N -0.508 5.508 4 C 0.117 3.883 5 C -0.322 4.322 6 C 0.598 3.402 7 O -0.564 6.564 8 N -0.708 5.708 9 C 0.148 3.852 10 H 0.078 0.922 11 C -0.157 4.157 12 C -0.114 4.114 13 C 0.061 3.939 14 N -0.681 5.681 15 C 0.064 3.936 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.272 1.272 26 H -0.270 1.270 27 S 0.215 5.785 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.185 0.815 32 H 0.407 0.593 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.036 0.964 40 H 0.347 0.653 41 H 0.099 0.901 42 H 0.066 0.934 43 H 0.396 0.604 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.668 15.413 -19.524 26.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.213 4.213 3 N -0.224 5.224 4 C -0.042 4.042 5 C -0.447 4.447 6 C 0.384 3.616 7 O -0.444 6.444 8 N -0.359 5.359 9 C 0.043 3.957 10 H 0.096 0.904 11 C -0.215 4.215 12 C -0.153 4.153 13 C -0.068 4.068 14 N -0.314 5.314 15 C -0.068 4.068 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.195 1.195 27 S 0.471 5.529 28 H 0.124 0.876 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.202 0.798 32 H 0.243 0.757 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.166 0.834 41 H 0.117 0.883 42 H 0.084 0.916 43 H 0.230 0.770 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.683 14.756 -19.658 26.069 hybrid contribution -0.523 0.425 0.895 1.120 sum -9.205 15.182 -18.763 25.832 Atomic orbital electron populations 1.20798 0.82077 1.06091 1.05689 1.28207 1.03858 0.90819 0.98406 1.66300 1.04790 1.32356 1.18943 1.22276 0.91144 0.95864 0.94888 1.25716 0.98486 0.98633 1.21843 1.16870 0.86137 0.82857 0.75694 1.90823 1.45527 1.56134 1.51941 1.45986 1.09927 1.05705 1.74304 1.21012 0.81579 0.95285 0.97784 0.90352 1.22114 1.02526 1.01939 0.94965 1.21793 1.04675 0.95019 0.93765 1.22027 0.99984 0.89222 0.95542 1.60036 1.60567 1.09685 1.01094 1.21523 1.01060 0.93184 0.91056 1.20848 0.82327 0.91771 0.82485 1.90486 1.53817 1.46540 1.59979 1.41955 1.60127 1.09514 1.09512 1.19711 1.45018 0.86483 0.94993 0.90220 1.26062 0.96107 1.03377 0.95836 1.69680 1.45970 1.32656 1.07921 0.84862 0.78336 0.77113 0.77980 1.19687 1.19726 1.19503 1.83722 0.94401 1.09986 1.64766 0.87627 0.88333 0.87330 0.79813 0.75672 0.91098 0.93519 0.90083 0.89777 0.88864 0.91355 0.94560 0.83391 0.88306 0.91599 0.77019 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.50 10.46 71.24 0.75 0.25 16 2 C 0.06 0.82 7.38 88.46 0.65 1.47 16 3 N -0.51 -9.64 10.51 -190.30 -2.00 -11.64 16 4 C 0.12 2.33 11.09 84.23 0.93 3.26 16 5 C -0.32 -6.05 6.49 23.88 0.15 -5.89 16 6 C 0.60 12.95 7.75 86.45 0.67 13.62 16 7 O -0.56 -16.17 16.53 -4.30 -0.07 -16.24 16 8 N -0.71 -11.70 4.53 -446.50 -2.02 -13.72 16 9 C 0.15 2.48 2.57 44.99 0.12 2.59 16 10 H 0.08 1.61 7.58 -2.38 -0.02 1.60 16 11 C -0.16 -2.33 9.48 71.98 0.68 -1.65 16 12 C -0.11 -1.89 5.01 30.59 0.15 -1.74 16 13 C 0.06 1.31 5.57 86.30 0.48 1.79 16 14 N -0.68 -20.18 6.13 -517.94 -3.17 -23.36 16 15 C 0.06 2.16 6.17 85.56 0.53 2.69 16 16 C 0.44 20.62 7.82 87.66 0.69 21.30 16 17 O -0.62 -33.99 15.78 -3.05 -0.05 -34.04 16 18 N -0.57 -29.30 5.29 -306.98 -1.62 -30.93 16 19 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 22 N -0.92 -49.56 13.05 21.66 0.28 -49.28 16 23 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 25 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 27 S 0.21 2.60 22.31 -56.49 -1.26 1.34 16 28 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.18 3.55 8.06 -2.91 -0.02 3.53 16 32 H 0.41 5.08 7.79 -92.70 -0.72 4.36 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 0.70 7.75 -2.38 -0.02 0.69 16 40 H 0.35 10.41 8.43 -89.69 -0.76 9.66 16 41 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 44 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -74.44 392.50 -1.96 -76.40 By element: Atomic # 1 Polarization: 38.55 SS G_CDS: -1.15 Total: 37.40 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 7.08 Total: 19.44 kcal Atomic # 7 Polarization: -120.39 SS G_CDS: -8.53 Total: -128.92 kcal Atomic # 8 Polarization: -50.15 SS G_CDS: -0.12 Total: -50.27 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.26 Total: 1.34 kcal Total: -74.44 -1.96 -76.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732685560.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.221 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds