Wall clock time and date at job start Sat Apr 11 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29434 * 124.80542 * 2 1 4 4 C 1.30935 * 117.36663 * 180.02562 * 3 2 1 5 5 C 1.35665 * 114.19418 * 0.02562 * 4 3 2 6 6 C 1.46676 * 126.13281 * 179.97438 * 5 4 3 7 7 O 1.21690 * 119.99815 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99963 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46684 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.47565 * 65.00686 * 10 9 8 12 12 C 1.53003 * 109.47015 * 184.99978 * 10 9 8 13 13 N 1.46894 * 109.47749 * 305.00009 * 10 9 8 14 14 C 1.46895 * 111.00175 * 298.95958 * 13 10 9 15 15 C 1.46900 * 111.00429 * 175.00176 * 13 10 9 16 16 C 1.50706 * 109.47092 * 190.00377 * 15 13 10 17 17 O 1.21288 * 119.99735 * 359.97438 * 16 15 13 18 18 N 1.34775 * 119.99632 * 179.97438 * 16 15 13 19 19 C 1.37094 * 119.99525 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00253 * 0.02562 * 19 18 16 21 21 C 1.38959 * 119.99716 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99721 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99763 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47421 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46779 * 119.99969 * 23 21 19 26 26 H 1.48495 * 109.47120 * 239.99827 * 23 21 19 27 27 S 1.70954 * 124.80679 * 180.32403 * 2 1 3 28 28 H 1.09001 * 109.47114 * 89.97113 * 1 2 3 29 29 H 1.08998 * 109.47243 * 209.97245 * 1 2 3 30 30 H 1.09001 * 109.47513 * 329.96687 * 1 2 3 31 31 H 1.08002 * 122.90656 * 179.97438 * 4 3 2 32 32 H 0.96995 * 120.00018 * 0.27844 * 8 6 5 33 33 H 1.09000 * 109.47212 * 300.00355 * 9 8 6 34 34 H 1.09001 * 109.46577 * 60.00430 * 9 8 6 35 35 H 1.08999 * 109.47145 * 300.00897 * 12 10 9 36 36 H 1.09000 * 109.46883 * 59.99966 * 12 10 9 37 37 H 1.09001 * 109.47405 * 179.97438 * 12 10 9 38 38 H 1.09006 * 109.47283 * 59.99452 * 14 13 10 39 39 H 1.09001 * 109.47573 * 179.97438 * 14 13 10 40 40 H 1.09007 * 109.47002 * 299.99934 * 14 13 10 41 41 H 1.09004 * 109.46882 * 310.00123 * 15 13 10 42 42 H 1.08995 * 109.46764 * 70.00285 * 15 13 10 43 43 H 0.97002 * 119.99856 * 0.02562 * 18 16 15 44 44 H 0.97006 * 119.99540 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 -0.0005 5 6 3.9352 -0.4058 -0.0015 6 6 5.3188 -0.8924 -0.0028 7 8 6.2424 -0.1001 -0.0026 8 7 5.5673 -2.2171 -0.0033 9 6 6.9493 -2.7032 -0.0051 10 6 6.9517 -4.2332 -0.0059 11 1 6.5170 -4.5968 -0.9369 12 6 8.3897 -4.7410 0.1179 13 7 6.1595 -4.7248 1.1292 14 6 6.7315 -4.2740 2.4050 15 6 6.0405 -6.1885 1.0936 16 6 5.0292 -6.6353 2.1178 17 8 4.4638 -5.8151 2.8096 18 7 4.7533 -7.9463 2.2649 19 6 3.8337 -8.3528 3.1969 20 1 3.3302 -7.6225 3.8130 21 6 3.5496 -9.7045 3.3490 22 7 4.1627 -10.5931 2.5997 23 14 2.2962 -10.2583 4.6184 24 1 1.7517 -9.0722 5.3268 25 1 1.1898 -10.9798 3.9396 26 1 2.9500 -11.1633 5.5975 27 16 2.4827 -1.4037 -0.0079 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8897 0.5143 31 1 4.2432 1.7164 -0.0010 32 1 4.8311 -2.8486 -0.0068 33 1 7.4614 -2.3389 -0.8957 34 1 7.4636 -2.3391 0.8843 35 1 8.9777 -4.3761 -0.7243 36 1 8.8245 -4.3774 1.0490 37 1 8.3915 -5.8310 0.1178 38 1 6.7436 -3.1844 2.4330 39 1 6.1255 -4.6516 3.2286 40 1 7.7498 -4.6512 2.5000 41 1 5.7159 -6.5026 0.1015 42 1 7.0080 -6.6372 1.3185 43 1 5.2058 -8.6022 1.7118 44 1 3.9646 -11.5367 2.7061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734028607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:45 Heat of formation + Delta-G solvation = -18.517624 kcal Electronic energy + Delta-G solvation = -26965.855591 eV Core-core repulsion = 23045.469781 eV Total energy + Delta-G solvation = -3920.385810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32566 -39.51848 -38.74108 -37.31919 -34.44276 -33.85755 -32.55538 -31.32354 -31.03893 -29.09735 -27.97100 -26.46007 -25.41575 -24.44438 -23.80536 -21.77771 -20.33241 -19.44049 -19.10658 -18.53859 -17.87480 -17.03274 -16.55819 -16.09960 -15.75901 -15.35342 -15.06382 -14.84117 -14.63564 -14.57367 -14.14304 -14.09648 -13.69086 -13.56020 -13.28019 -13.06218 -13.00404 -12.68443 -12.67612 -12.32537 -11.94729 -11.82139 -11.67986 -11.49070 -11.26451 -11.26279 -10.98153 -10.80190 -10.37735 -10.33838 -10.26302 -9.89318 -9.69951 -9.52385 -9.19854 -9.01433 -8.52309 -8.02530 -7.91482 -6.45863 -3.86562 0.05851 0.98451 1.40499 2.28166 3.00594 3.10403 3.12937 3.24023 3.30694 3.84339 3.85948 3.91214 4.20458 4.61785 4.70094 4.74274 4.91641 5.07121 5.08643 5.10760 5.15417 5.17592 5.21648 5.39767 5.46594 5.51785 5.53764 5.67955 5.73242 5.84950 5.86950 5.89066 5.94376 6.11545 6.23146 6.31148 6.52984 7.16820 7.28399 7.33779 7.45629 7.51543 8.02438 8.04388 8.57502 9.14361 9.50418 10.01931 10.71896 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010430 B = 0.002953 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.871294 B = 9478.079725 C =11722.322106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.051 3.949 3 N -0.484 5.484 4 C 0.118 3.882 5 C -0.296 4.296 6 C 0.596 3.404 7 O -0.537 6.537 8 N -0.707 5.707 9 C 0.131 3.869 10 C 0.062 3.938 11 H 0.089 0.911 12 C -0.186 4.186 13 N -0.512 5.512 14 C 0.016 3.984 15 C 0.044 3.956 16 C 0.443 3.557 17 O -0.577 6.577 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 S 0.192 5.808 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.186 0.814 32 H 0.410 0.590 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.021 0.979 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.502 14.577 -9.197 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.223 4.223 3 N -0.199 5.199 4 C -0.040 4.040 5 C -0.421 4.421 6 C 0.381 3.619 7 O -0.417 6.417 8 N -0.358 5.358 9 C 0.007 3.993 10 C -0.047 4.047 11 H 0.107 0.893 12 C -0.245 4.245 13 N -0.236 5.236 14 C -0.132 4.132 15 C -0.087 4.087 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 S 0.448 5.552 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.203 0.797 32 H 0.247 0.753 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.115 0.885 40 H 0.039 0.961 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.238 15.053 -8.765 17.420 hybrid contribution 0.854 -0.829 0.336 1.237 sum 0.616 14.224 -8.428 16.545 Atomic orbital electron populations 1.20541 0.84712 1.04789 1.04237 1.27535 1.02385 0.91468 1.00908 1.66239 1.04761 1.31328 1.17525 1.22137 0.90754 0.95446 0.95712 1.25784 0.98224 0.97987 1.20081 1.16696 0.85974 0.82633 0.76631 1.90820 1.44369 1.55403 1.51067 1.45750 1.09926 1.06075 1.74062 1.21459 0.82501 0.92841 1.02472 1.22060 0.93007 0.93678 0.95954 0.89254 1.22398 0.97110 1.02204 1.02780 1.61823 1.49364 1.10056 1.02337 1.22609 0.97487 1.00271 0.92823 1.21885 0.98551 0.87916 1.00363 1.19722 0.86860 0.83304 0.87234 1.90490 1.54626 1.52192 1.48796 1.41873 1.37919 1.05395 1.34893 1.19738 1.16993 0.92038 1.13991 0.87860 1.25256 0.98629 0.95605 0.98439 1.69618 1.42746 1.02140 1.39793 0.85819 0.79884 0.78768 0.80000 1.19214 1.20740 1.20788 1.84339 0.95990 1.10261 1.64559 0.89142 0.89507 0.88940 0.79671 0.75324 0.90858 0.90975 0.91833 0.91750 0.91557 0.92140 0.88547 0.96055 0.89455 0.93114 0.77538 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.46 36.00 0.38 -0.17 16 2 C 0.05 0.53 7.39 -13.29 -0.10 0.43 16 3 N -0.48 -5.85 10.51 -11.50 -0.12 -5.97 16 4 C 0.12 1.45 11.09 -18.85 -0.21 1.24 16 5 C -0.30 -3.75 6.48 -37.10 -0.24 -3.99 16 6 C 0.60 8.32 7.79 -12.85 -0.10 8.22 16 7 O -0.54 -8.82 16.87 5.20 0.09 -8.74 16 8 N -0.71 -8.93 5.38 -61.62 -0.33 -9.26 16 9 C 0.13 1.51 4.69 -4.04 -0.02 1.49 16 10 C 0.06 0.69 2.50 -67.71 -0.17 0.53 16 11 H 0.09 0.92 8.03 -51.93 -0.42 0.50 16 12 C -0.19 -1.81 8.50 37.16 0.32 -1.49 16 13 N -0.51 -7.48 3.93 -236.33 -0.93 -8.41 16 14 C 0.02 0.24 8.45 60.06 0.51 0.75 16 15 C 0.04 0.71 4.89 -4.97 -0.02 0.69 16 16 C 0.44 9.77 7.48 -10.98 -0.08 9.69 16 17 O -0.58 -14.54 13.91 5.55 0.08 -14.46 16 18 N -0.56 -13.62 5.29 -10.96 -0.06 -13.67 16 19 C -0.30 -8.01 9.68 -14.93 -0.14 -8.15 16 20 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -23.89 13.05 55.50 0.72 -23.17 16 23 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 27 S 0.19 2.07 22.31 -107.50 -2.40 -0.33 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.19 2.05 8.06 -52.49 -0.42 1.63 16 32 H 0.41 5.18 7.33 -40.82 -0.30 4.88 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.89 6.70 -51.93 -0.35 0.54 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.65 6.39 -51.93 -0.33 0.32 16 37 H 0.07 0.67 6.75 -51.93 -0.35 0.32 16 38 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 39 H 0.10 1.83 5.82 -51.93 -0.30 1.53 16 40 H 0.02 0.29 6.28 -51.92 -0.33 -0.03 16 41 H 0.09 1.26 8.00 -51.93 -0.42 0.84 16 42 H 0.05 0.76 6.94 -51.93 -0.36 0.40 16 43 H 0.39 9.08 7.90 -40.82 -0.32 8.75 16 44 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -32.11 377.82 -8.12 -40.23 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -5.85 Total: 12.90 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 0.02 Total: 9.70 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.72 Total: -60.48 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.16 Total: -23.20 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.40 Total: -0.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.11 -8.12 -40.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734028607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.710 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds