Wall clock time and date at job start Sat Apr 11 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.29434 * 124.80542 * 2 1 4 4 C 1.30935 * 117.36663 * 180.02562 * 3 2 1 5 5 C 1.35665 * 114.19418 * 0.02562 * 4 3 2 6 6 C 1.46676 * 126.13281 * 179.97438 * 5 4 3 7 7 O 1.21690 * 119.99815 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99963 * 179.97438 * 6 5 4 9 9 C 1.46506 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46684 * 180.02562 * 9 8 6 11 11 H 1.08998 * 109.47565 * 65.00686 * 10 9 8 12 12 C 1.53003 * 109.47015 * 184.99978 * 10 9 8 13 13 N 1.46894 * 109.47749 * 305.00009 * 10 9 8 14 14 C 1.46895 * 111.00175 * 298.95958 * 13 10 9 15 15 C 1.46900 * 111.00429 * 175.00176 * 13 10 9 16 16 C 1.50706 * 109.47092 * 190.00377 * 15 13 10 17 17 O 1.21288 * 119.99735 * 359.97438 * 16 15 13 18 18 N 1.34775 * 119.99632 * 179.97438 * 16 15 13 19 19 C 1.37094 * 119.99525 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00253 * 0.02562 * 19 18 16 21 21 C 1.38959 * 119.99716 * 180.02562 * 19 18 16 22 22 N 1.31409 * 119.99721 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99763 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47421 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46779 * 119.99969 * 23 21 19 26 26 H 1.48495 * 109.47120 * 239.99827 * 23 21 19 27 27 S 1.70954 * 124.80679 * 180.32403 * 2 1 3 28 28 H 1.09001 * 109.47114 * 89.97113 * 1 2 3 29 29 H 1.08998 * 109.47243 * 209.97245 * 1 2 3 30 30 H 1.09001 * 109.47513 * 329.96687 * 1 2 3 31 31 H 1.08002 * 122.90656 * 179.97438 * 4 3 2 32 32 H 0.96995 * 120.00018 * 0.27844 * 8 6 5 33 33 H 1.09000 * 109.47212 * 300.00355 * 9 8 6 34 34 H 1.09001 * 109.46577 * 60.00430 * 9 8 6 35 35 H 1.08999 * 109.47145 * 300.00897 * 12 10 9 36 36 H 1.09000 * 109.46883 * 59.99966 * 12 10 9 37 37 H 1.09001 * 109.47405 * 179.97438 * 12 10 9 38 38 H 1.09006 * 109.47283 * 59.99452 * 14 13 10 39 39 H 1.09001 * 109.47573 * 179.97438 * 14 13 10 40 40 H 1.09007 * 109.47002 * 299.99934 * 14 13 10 41 41 H 1.09004 * 109.46882 * 310.00123 * 15 13 10 42 42 H 1.08995 * 109.46764 * 70.00285 * 15 13 10 43 43 H 0.97002 * 119.99856 * 0.02562 * 18 16 15 44 44 H 0.97006 * 119.99540 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2457 1.0628 0.0000 4 6 3.5441 0.8933 -0.0005 5 6 3.9352 -0.4058 -0.0015 6 6 5.3188 -0.8924 -0.0028 7 8 6.2424 -0.1001 -0.0026 8 7 5.5673 -2.2171 -0.0033 9 6 6.9493 -2.7032 -0.0051 10 6 6.9517 -4.2332 -0.0059 11 1 6.5170 -4.5968 -0.9369 12 6 8.3897 -4.7410 0.1179 13 7 6.1595 -4.7248 1.1292 14 6 6.7315 -4.2740 2.4050 15 6 6.0405 -6.1885 1.0936 16 6 5.0292 -6.6353 2.1178 17 8 4.4638 -5.8151 2.8096 18 7 4.7533 -7.9463 2.2649 19 6 3.8337 -8.3528 3.1969 20 1 3.3302 -7.6225 3.8130 21 6 3.5496 -9.7045 3.3490 22 7 4.1627 -10.5931 2.5997 23 14 2.2962 -10.2583 4.6184 24 1 1.7517 -9.0722 5.3268 25 1 1.1898 -10.9798 3.9396 26 1 2.9500 -11.1633 5.5975 27 16 2.4827 -1.4037 -0.0079 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8897 0.5143 31 1 4.2432 1.7164 -0.0010 32 1 4.8311 -2.8486 -0.0068 33 1 7.4614 -2.3389 -0.8957 34 1 7.4636 -2.3391 0.8843 35 1 8.9777 -4.3761 -0.7243 36 1 8.8245 -4.3774 1.0490 37 1 8.3915 -5.8310 0.1178 38 1 6.7436 -3.1844 2.4330 39 1 6.1255 -4.6516 3.2286 40 1 7.7498 -4.6512 2.5000 41 1 5.7159 -6.5026 0.1015 42 1 7.0080 -6.6372 1.3185 43 1 5.2058 -8.6022 1.7118 44 1 3.9646 -11.5367 2.7061 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734028607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:45 Heat of formation + Delta-G solvation = -43.184604 kcal Electronic energy + Delta-G solvation = -26966.925231 eV Core-core repulsion = 23045.469781 eV Total energy + Delta-G solvation = -3921.455451 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.31469 -40.65549 -40.07473 -38.71880 -35.97285 -35.36155 -33.35880 -33.22332 -32.10502 -29.92748 -29.34987 -27.36472 -27.00247 -25.51700 -25.04910 -22.75495 -21.49925 -20.81274 -20.32078 -19.77077 -19.43095 -18.14571 -17.74167 -17.13301 -17.06218 -16.57590 -16.36859 -16.27162 -15.81718 -15.77284 -15.52759 -15.19079 -14.97870 -14.68538 -14.46704 -14.19921 -13.93181 -13.66705 -13.46133 -13.39729 -13.25278 -13.08862 -12.90243 -12.82227 -12.59116 -12.42608 -12.35702 -12.26306 -12.10016 -11.78010 -11.41794 -11.40411 -10.80086 -10.63244 -10.23363 -10.17998 -9.95094 -9.90568 -9.18245 -8.43320 -5.90774 -0.83655 0.11990 0.52324 1.33850 1.38096 1.43722 1.56950 2.01068 2.09822 2.11626 2.30423 2.76458 3.08706 3.24524 3.46806 3.68608 3.78759 3.96524 4.05747 4.20741 4.26591 4.29356 4.36524 4.55972 4.57661 4.59684 4.61451 4.65104 4.67306 4.74775 4.85898 4.92156 5.01143 5.14792 5.19098 5.27553 5.35656 5.45216 5.89294 6.08183 6.19572 6.34080 6.53211 6.65522 6.99737 7.18136 7.62659 8.18649 8.74300 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010430 B = 0.002953 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.871294 B = 9478.079725 C =11722.322106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.061 3.939 3 N -0.504 5.504 4 C 0.117 3.883 5 C -0.321 4.321 6 C 0.595 3.405 7 O -0.569 6.569 8 N -0.703 5.703 9 C 0.131 3.869 10 C 0.069 3.931 11 H 0.107 0.893 12 C -0.181 4.181 13 N -0.524 5.524 14 C 0.025 3.975 15 C 0.058 3.942 16 C 0.443 3.557 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.327 4.327 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.988 3.012 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.274 1.274 27 S 0.201 5.799 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.190 0.810 32 H 0.411 0.589 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.037 0.963 41 H 0.113 0.887 42 H 0.070 0.930 43 H 0.395 0.605 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 14.220 -10.309 17.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.213 4.213 3 N -0.220 5.220 4 C -0.041 4.041 5 C -0.445 4.445 6 C 0.381 3.619 7 O -0.451 6.451 8 N -0.353 5.353 9 C 0.008 3.992 10 C -0.039 4.039 11 H 0.125 0.875 12 C -0.240 4.240 13 N -0.249 5.249 14 C -0.123 4.123 15 C -0.073 4.073 16 C 0.230 3.770 17 O -0.497 6.497 18 N -0.214 5.214 19 C -0.457 4.457 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.563 5.563 23 Si 0.812 3.188 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.200 1.200 27 S 0.458 5.542 28 H 0.129 0.871 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.207 0.793 32 H 0.247 0.753 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.131 0.869 42 H 0.088 0.912 43 H 0.229 0.771 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.478 14.673 -9.898 17.705 hybrid contribution 0.895 -0.634 0.662 1.281 sum 0.418 14.039 -9.236 16.810 Atomic orbital electron populations 1.20781 0.82028 1.05868 1.05854 1.28221 1.03846 0.90740 0.98521 1.66310 1.04704 1.32048 1.18918 1.22297 0.91190 0.95616 0.95025 1.25704 0.98354 0.98578 1.21859 1.16865 0.86219 0.82748 0.76085 1.90791 1.45402 1.56094 1.52786 1.45782 1.10488 1.05685 1.73354 1.21550 0.81907 0.93051 1.02731 1.22114 0.93744 0.93161 0.94912 0.87540 1.22361 0.95999 1.02185 1.03501 1.61740 1.50964 1.09098 1.03049 1.22402 0.97444 1.00363 0.92050 1.21748 0.97313 0.88970 0.99296 1.20787 0.86714 0.82223 0.87227 1.90476 1.56007 1.52969 1.50264 1.41936 1.38112 1.06369 1.34986 1.19659 1.18504 0.92231 1.15260 0.90334 1.25962 1.00067 0.95231 0.99989 1.69674 1.43527 1.02466 1.40634 0.84935 0.77906 0.78049 0.77864 1.19798 1.19691 1.19952 1.84262 0.95183 1.10198 1.64551 0.87066 0.88026 0.88183 0.79311 0.75292 0.89399 0.91914 0.89664 0.92283 0.91422 0.91723 0.92627 0.94436 0.86880 0.91245 0.77109 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.95 10.46 71.23 0.75 -0.20 16 2 C 0.06 1.17 7.39 88.46 0.65 1.82 16 3 N -0.50 -11.88 10.51 -190.31 -2.00 -13.88 16 4 C 0.12 2.89 11.09 84.23 0.93 3.83 16 5 C -0.32 -8.11 6.48 23.88 0.15 -7.96 16 6 C 0.59 16.63 7.79 86.45 0.67 17.31 16 7 O -0.57 -18.85 16.87 -4.32 -0.07 -18.92 16 8 N -0.70 -17.25 5.38 -467.07 -2.51 -19.77 16 9 C 0.13 2.81 4.69 86.38 0.40 3.21 16 10 C 0.07 1.37 2.50 44.92 0.11 1.48 16 11 H 0.11 1.81 8.03 -2.39 -0.02 1.79 16 12 C -0.18 -2.98 8.50 71.98 0.61 -2.36 16 13 N -0.52 -14.58 3.93 -901.61 -3.55 -18.13 16 14 C 0.03 0.77 8.45 127.69 1.08 1.85 16 15 C 0.06 1.76 4.89 85.56 0.42 2.18 16 16 C 0.44 19.57 7.48 87.66 0.66 20.23 16 17 O -0.61 -31.54 13.91 -3.05 -0.04 -31.59 16 18 N -0.58 -28.07 5.29 -306.98 -1.62 -29.69 16 19 C -0.33 -17.90 9.68 84.04 0.81 -17.08 16 20 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -48.48 13.05 21.67 0.28 -48.19 16 23 Si 0.99 41.95 29.55 68.60 2.03 43.97 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 S 0.20 4.19 22.31 -56.49 -1.26 2.93 16 28 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.19 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.41 10.05 7.33 -92.71 -0.68 9.37 16 33 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.48 6.70 -2.39 -0.02 1.47 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.06 1.05 6.39 -2.39 -0.02 1.03 16 37 H 0.07 1.12 6.75 -2.39 -0.02 1.11 16 38 H 0.06 1.87 6.44 -2.38 -0.02 1.85 16 39 H 0.05 2.16 5.82 -2.39 -0.01 2.15 16 40 H 0.04 0.99 6.28 -2.38 -0.01 0.98 16 41 H 0.11 2.93 8.00 -2.38 -0.02 2.91 16 42 H 0.07 1.91 6.94 -2.39 -0.02 1.89 16 43 H 0.40 18.31 7.90 -92.71 -0.73 17.58 16 44 H 0.28 13.61 8.31 -92.70 -0.77 12.84 16 Total: -1.00 -70.52 377.82 -1.37 -71.89 By element: Atomic # 1 Polarization: 37.64 SS G_CDS: -0.35 Total: 37.29 kcal Atomic # 6 Polarization: 16.36 SS G_CDS: 7.72 Total: 24.08 kcal Atomic # 7 Polarization: -120.26 SS G_CDS: -9.40 Total: -129.66 kcal Atomic # 8 Polarization: -50.40 SS G_CDS: -0.12 Total: -50.51 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -1.26 Total: 2.93 kcal Total: -70.52 -1.37 -71.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734028607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.707 kcal (2) G-P(sol) polarization free energy of solvation -70.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds