Wall clock time and date at job start Sat Apr 11 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29435 * 124.80430 * 2 1 4 4 C 1.30941 * 117.36407 * 180.02562 * 3 2 1 5 5 C 1.35664 * 114.19124 * 0.02562 * 4 3 2 6 6 C 1.46685 * 126.12904 * 179.97438 * 5 4 3 7 7 O 1.21687 * 119.99689 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99876 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99827 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47105 * 184.97554 * 9 8 6 11 11 H 1.08997 * 109.47315 * 185.25084 * 10 9 8 12 12 C 1.52998 * 109.46981 * 65.25474 * 10 9 8 13 13 N 1.46894 * 109.47397 * 305.25450 * 10 9 8 14 14 C 1.46903 * 111.00007 * 303.79829 * 13 10 9 15 15 C 1.46900 * 111.00217 * 179.83814 * 13 10 9 16 16 C 1.50704 * 109.47072 * 189.99948 * 15 13 10 17 17 O 1.21290 * 119.99902 * 0.02562 * 16 15 13 18 18 N 1.34780 * 119.99789 * 180.02562 * 16 15 13 19 19 C 1.37093 * 119.99613 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00555 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99705 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00105 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00092 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47047 * 89.99787 * 23 21 19 25 25 H 1.48506 * 109.46924 * 210.00144 * 23 21 19 26 26 H 1.48503 * 109.46736 * 329.99671 * 23 21 19 27 27 S 1.70956 * 124.80736 * 180.32300 * 2 1 3 28 28 H 1.08991 * 109.47558 * 90.01971 * 1 2 3 29 29 H 1.09001 * 109.46859 * 210.02466 * 1 2 3 30 30 H 1.09003 * 109.46776 * 330.01818 * 1 2 3 31 31 H 1.08003 * 122.90534 * 180.02562 * 4 3 2 32 32 H 0.97004 * 119.99993 * 0.02562 * 8 6 5 33 33 H 1.08999 * 109.47099 * 64.97939 * 9 8 6 34 34 H 1.08996 * 109.47653 * 304.98025 * 9 8 6 35 35 H 1.08995 * 109.47347 * 179.97438 * 12 10 9 36 36 H 1.09004 * 109.47375 * 59.99919 * 12 10 9 37 37 H 1.09004 * 109.47385 * 300.00233 * 12 10 9 38 38 H 1.09000 * 109.47090 * 66.52110 * 14 13 10 39 39 H 1.09000 * 109.46863 * 186.52024 * 14 13 10 40 40 H 1.09000 * 109.46913 * 306.52066 * 14 13 10 41 41 H 1.08995 * 109.47415 * 310.00508 * 15 13 10 42 42 H 1.08999 * 109.46581 * 70.00774 * 15 13 10 43 43 H 0.97000 * 119.99999 * 0.02562 * 18 16 15 44 44 H 0.96995 * 120.00250 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 3.9351 -0.4058 -0.0015 6 6 5.3189 -0.8925 -0.0028 7 8 6.2425 -0.1002 -0.0035 8 7 5.5673 -2.2172 -0.0033 9 6 6.9493 -2.7032 -0.0051 10 6 6.9534 -4.2281 -0.1303 11 1 7.9747 -4.5975 -0.0382 12 6 6.3872 -4.6294 -1.4939 13 7 6.1246 -4.8092 0.9342 14 6 6.5854 -4.3711 2.2585 15 6 6.1020 -6.2752 0.8430 16 6 5.0592 -6.8210 1.7842 17 8 4.3995 -6.0633 2.4637 18 7 4.8598 -8.1512 1.8708 19 6 3.9116 -8.6477 2.7274 20 1 3.3241 -7.9732 3.3324 21 6 3.7063 -10.0191 2.8170 22 7 4.4215 -10.8400 2.0812 23 14 2.4138 -10.6958 3.9837 24 1 1.1127 -10.7981 3.2754 25 1 2.8283 -12.0417 4.4547 26 1 2.2732 -9.7853 5.1484 27 16 2.4828 -1.4037 -0.0079 28 1 -0.3634 -0.0004 -1.0275 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5136 31 1 4.2433 1.7164 -0.0002 32 1 4.8310 -2.8487 -0.0031 33 1 7.4375 -2.4138 0.9255 34 1 7.4864 -2.2680 -0.8478 35 1 6.3905 -5.7157 -1.5833 36 1 7.0022 -4.1983 -2.2839 37 1 5.3658 -4.2600 -1.5862 38 1 6.4179 -3.2993 2.3653 39 1 6.0309 -4.9042 3.0308 40 1 7.6493 -4.5847 2.3620 41 1 5.8612 -6.5720 -0.1778 42 1 7.0802 -6.6712 1.1155 43 1 5.3877 -8.7571 1.3276 44 1 4.2780 -11.7973 2.1435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734028610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:49 Heat of formation + Delta-G solvation = -17.425392 kcal Electronic energy + Delta-G solvation = -27052.209056 eV Core-core repulsion = 23131.870609 eV Total energy + Delta-G solvation = -3920.338447 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34989 -39.52353 -38.69261 -37.24634 -34.44126 -33.81242 -32.57276 -31.29680 -31.18190 -29.24229 -28.33924 -26.24106 -24.94894 -24.49594 -23.71088 -22.02597 -20.14506 -19.67145 -19.14269 -18.60571 -17.87794 -17.05660 -16.55294 -16.04977 -15.69972 -15.35163 -15.03529 -14.79964 -14.67787 -14.52267 -14.09946 -14.01515 -13.79063 -13.69126 -13.44900 -13.19694 -12.87987 -12.69272 -12.50454 -12.27274 -11.96379 -11.74944 -11.66336 -11.51628 -11.39031 -11.25763 -10.96734 -10.67816 -10.43022 -10.35027 -10.25645 -9.90610 -9.71449 -9.51391 -9.20699 -9.02338 -8.51331 -8.03879 -7.95394 -6.45728 -3.86577 0.04457 0.97102 1.39167 2.26832 3.01179 3.08712 3.14418 3.23575 3.28891 3.82734 3.85493 3.89480 4.19591 4.60291 4.69178 4.75661 4.85677 5.06353 5.07308 5.09759 5.15948 5.17428 5.22850 5.44640 5.50948 5.52946 5.61307 5.66994 5.71852 5.83874 5.87597 5.92094 5.95459 6.14798 6.23923 6.29480 6.48280 7.16081 7.27364 7.32848 7.44724 7.51318 8.02064 8.03498 8.57407 9.14148 9.50306 10.01741 10.71971 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.002849 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.882791 B = 9824.540715 C =11638.143908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.051 3.949 3 N -0.483 5.483 4 C 0.118 3.882 5 C -0.297 4.297 6 C 0.595 3.405 7 O -0.537 6.537 8 N -0.706 5.706 9 C 0.130 3.870 10 C 0.063 3.937 11 H 0.058 0.942 12 C -0.150 4.150 13 N -0.516 5.516 14 C 0.020 3.980 15 C 0.041 3.959 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 S 0.192 5.808 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.187 0.813 32 H 0.411 0.589 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.016 0.984 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 15.515 -8.313 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.223 4.223 3 N -0.198 5.198 4 C -0.040 4.040 5 C -0.421 4.421 6 C 0.380 3.620 7 O -0.416 6.416 8 N -0.358 5.358 9 C 0.006 3.994 10 C -0.046 4.046 11 H 0.076 0.924 12 C -0.207 4.207 13 N -0.241 5.241 14 C -0.127 4.127 15 C -0.090 4.090 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.200 5.200 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 S 0.448 5.552 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.203 0.797 32 H 0.249 0.751 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.034 0.966 41 H 0.111 0.889 42 H 0.066 0.934 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.125 15.907 -7.927 17.808 hybrid contribution 0.888 -0.781 0.363 1.237 sum -0.236 15.126 -7.564 16.914 Atomic orbital electron populations 1.20543 0.84705 1.04780 1.04260 1.27542 1.02391 0.91467 1.00876 1.66245 1.04758 1.31320 1.17518 1.22142 0.90755 0.95444 0.95688 1.25791 0.98235 0.97989 1.20110 1.16708 0.85969 0.82660 0.76667 1.90820 1.44356 1.55416 1.51052 1.45794 1.09956 1.06059 1.74013 1.21447 0.82659 0.92819 1.02475 1.21991 0.96247 0.93279 0.93102 0.92450 1.21933 1.01797 1.02172 0.94811 1.61623 1.51713 1.07748 1.02979 1.22557 0.97311 1.01380 0.91482 1.21954 0.98308 0.87726 1.01046 1.19711 0.87344 0.83102 0.86951 1.90493 1.50806 1.57229 1.47610 1.41869 1.34872 1.04959 1.38349 1.19683 1.13887 0.91022 1.18224 0.87913 1.25255 0.98545 0.95919 0.98179 1.69606 1.40524 1.03910 1.40275 0.85874 0.80224 0.78088 0.80210 1.20383 1.20956 1.19423 1.84369 0.95998 1.10228 1.64601 0.89126 0.89508 0.88936 0.79665 0.75130 0.91188 0.90541 0.91623 0.92016 0.91789 0.91977 0.88624 0.96560 0.88907 0.93392 0.77533 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.46 36.00 0.38 -0.16 16 2 C 0.05 0.52 7.39 -13.29 -0.10 0.42 16 3 N -0.48 -5.77 10.51 -11.50 -0.12 -5.89 16 4 C 0.12 1.43 11.09 -18.85 -0.21 1.22 16 5 C -0.30 -3.70 6.48 -37.09 -0.24 -3.94 16 6 C 0.60 8.20 7.79 -12.85 -0.10 8.10 16 7 O -0.54 -8.71 16.86 5.20 0.09 -8.63 16 8 N -0.71 -8.84 5.07 -61.62 -0.31 -9.15 16 9 C 0.13 1.50 4.62 -4.04 -0.02 1.48 16 10 C 0.06 0.71 2.32 -67.71 -0.16 0.55 16 11 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 12 C -0.15 -1.52 8.86 37.16 0.33 -1.19 16 13 N -0.52 -7.59 3.73 -236.33 -0.88 -8.47 16 14 C 0.02 0.31 8.58 60.07 0.52 0.83 16 15 C 0.04 0.66 5.26 -4.97 -0.03 0.64 16 16 C 0.44 9.79 7.41 -10.98 -0.08 9.70 16 17 O -0.58 -14.52 13.98 5.55 0.08 -14.44 16 18 N -0.56 -13.63 5.29 -10.96 -0.06 -13.68 16 19 C -0.30 -8.02 9.68 -14.93 -0.14 -8.17 16 20 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -23.91 13.05 55.50 0.72 -23.19 16 23 Si 0.93 20.51 29.55 -169.99 -5.02 15.48 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 27 S 0.19 2.04 22.31 -107.50 -2.40 -0.35 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.19 2.02 8.06 -52.48 -0.42 1.60 16 32 H 0.41 5.25 6.60 -40.82 -0.27 4.98 16 33 H 0.07 0.85 6.81 -51.93 -0.35 0.49 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.67 6.20 -51.93 -0.32 0.35 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.69 7.31 -51.93 -0.38 0.31 16 38 H 0.06 0.91 6.75 -51.93 -0.35 0.56 16 39 H 0.10 1.80 5.79 -51.93 -0.30 1.50 16 40 H 0.02 0.22 8.12 -51.93 -0.42 -0.20 16 41 H 0.09 1.35 5.82 -51.93 -0.30 1.05 16 42 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 43 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 44 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -31.94 378.89 -8.06 -40.00 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -5.91 Total: 12.64 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 0.05 Total: 9.97 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.65 Total: -60.38 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: 0.17 Total: -23.07 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.40 Total: -0.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.94 -8.06 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734028610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.576 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds