Wall clock time and date at job start Sat Apr 11 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29435 * 124.80430 * 2 1 4 4 C 1.30941 * 117.36407 * 180.02562 * 3 2 1 5 5 C 1.35664 * 114.19124 * 0.02562 * 4 3 2 6 6 C 1.46685 * 126.12904 * 179.97438 * 5 4 3 7 7 O 1.21687 * 119.99689 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99876 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99827 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.47105 * 184.97554 * 9 8 6 11 11 H 1.08997 * 109.47315 * 185.25084 * 10 9 8 12 12 C 1.52998 * 109.46981 * 65.25474 * 10 9 8 13 13 N 1.46894 * 109.47397 * 305.25450 * 10 9 8 14 14 C 1.46903 * 111.00007 * 303.79829 * 13 10 9 15 15 C 1.46900 * 111.00217 * 179.83814 * 13 10 9 16 16 C 1.50704 * 109.47072 * 189.99948 * 15 13 10 17 17 O 1.21290 * 119.99902 * 0.02562 * 16 15 13 18 18 N 1.34780 * 119.99789 * 180.02562 * 16 15 13 19 19 C 1.37093 * 119.99613 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00555 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99705 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00105 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00092 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47047 * 89.99787 * 23 21 19 25 25 H 1.48506 * 109.46924 * 210.00144 * 23 21 19 26 26 H 1.48503 * 109.46736 * 329.99671 * 23 21 19 27 27 S 1.70956 * 124.80736 * 180.32300 * 2 1 3 28 28 H 1.08991 * 109.47558 * 90.01971 * 1 2 3 29 29 H 1.09001 * 109.46859 * 210.02466 * 1 2 3 30 30 H 1.09003 * 109.46776 * 330.01818 * 1 2 3 31 31 H 1.08003 * 122.90534 * 180.02562 * 4 3 2 32 32 H 0.97004 * 119.99993 * 0.02562 * 8 6 5 33 33 H 1.08999 * 109.47099 * 64.97939 * 9 8 6 34 34 H 1.08996 * 109.47653 * 304.98025 * 9 8 6 35 35 H 1.08995 * 109.47347 * 179.97438 * 12 10 9 36 36 H 1.09004 * 109.47375 * 59.99919 * 12 10 9 37 37 H 1.09004 * 109.47385 * 300.00233 * 12 10 9 38 38 H 1.09000 * 109.47090 * 66.52110 * 14 13 10 39 39 H 1.09000 * 109.46863 * 186.52024 * 14 13 10 40 40 H 1.09000 * 109.46913 * 306.52066 * 14 13 10 41 41 H 1.08995 * 109.47415 * 310.00508 * 15 13 10 42 42 H 1.08999 * 109.46581 * 70.00774 * 15 13 10 43 43 H 0.97000 * 119.99999 * 0.02562 * 18 16 15 44 44 H 0.96995 * 120.00250 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5441 0.8932 -0.0005 5 6 3.9351 -0.4058 -0.0015 6 6 5.3189 -0.8925 -0.0028 7 8 6.2425 -0.1002 -0.0035 8 7 5.5673 -2.2172 -0.0033 9 6 6.9493 -2.7032 -0.0051 10 6 6.9534 -4.2281 -0.1303 11 1 7.9747 -4.5975 -0.0382 12 6 6.3872 -4.6294 -1.4939 13 7 6.1246 -4.8092 0.9342 14 6 6.5854 -4.3711 2.2585 15 6 6.1020 -6.2752 0.8430 16 6 5.0592 -6.8210 1.7842 17 8 4.3995 -6.0633 2.4637 18 7 4.8598 -8.1512 1.8708 19 6 3.9116 -8.6477 2.7274 20 1 3.3241 -7.9732 3.3324 21 6 3.7063 -10.0191 2.8170 22 7 4.4215 -10.8400 2.0812 23 14 2.4138 -10.6958 3.9837 24 1 1.1127 -10.7981 3.2754 25 1 2.8283 -12.0417 4.4547 26 1 2.2732 -9.7853 5.1484 27 16 2.4828 -1.4037 -0.0079 28 1 -0.3634 -0.0004 -1.0275 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8902 0.5136 31 1 4.2433 1.7164 -0.0002 32 1 4.8310 -2.8487 -0.0031 33 1 7.4375 -2.4138 0.9255 34 1 7.4864 -2.2680 -0.8478 35 1 6.3905 -5.7157 -1.5833 36 1 7.0022 -4.1983 -2.2839 37 1 5.3658 -4.2600 -1.5862 38 1 6.4179 -3.2993 2.3653 39 1 6.0309 -4.9042 3.0308 40 1 7.6493 -4.5847 2.3620 41 1 5.8612 -6.5720 -0.1778 42 1 7.0802 -6.6712 1.1155 43 1 5.3877 -8.7571 1.3276 44 1 4.2780 -11.7973 2.1435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734028610.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:48 Heat of formation + Delta-G solvation = -41.476034 kcal Electronic energy + Delta-G solvation = -27053.251971 eV Core-core repulsion = 23131.870609 eV Total energy + Delta-G solvation = -3921.381361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.32991 -40.63574 -40.07708 -38.61177 -35.99322 -35.30935 -33.36636 -33.22441 -32.18327 -30.18403 -29.54577 -27.44989 -26.44177 -25.39523 -25.01655 -23.00519 -21.36713 -20.72483 -20.57906 -19.80120 -19.47788 -18.14572 -17.72650 -17.23426 -16.90066 -16.55961 -16.44675 -16.10836 -15.80486 -15.73144 -15.34382 -15.22279 -15.17607 -14.79450 -14.46699 -14.40974 -13.84104 -13.62083 -13.44502 -13.31672 -13.25229 -13.11636 -12.95245 -12.74135 -12.60969 -12.39479 -12.33126 -12.30939 -12.11532 -11.72199 -11.41989 -11.39915 -10.80219 -10.63529 -10.22429 -10.17631 -9.95243 -9.90750 -9.24216 -8.43197 -5.90840 -0.83837 0.11704 0.52184 1.33806 1.39645 1.43637 1.55464 2.02212 2.09252 2.11207 2.30339 2.73836 3.08565 3.24416 3.44993 3.65665 3.80729 3.96199 3.98886 4.20476 4.21190 4.32407 4.40772 4.54509 4.57934 4.59460 4.61920 4.64958 4.67763 4.77111 4.91805 4.92346 5.00558 5.14691 5.17515 5.29933 5.34162 5.44877 5.88101 6.07752 6.18369 6.34066 6.53006 6.65217 6.99658 7.17743 7.62287 8.18011 8.74247 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011578 B = 0.002849 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.882791 B = 9824.540715 C =11638.143908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.061 3.939 3 N -0.504 5.504 4 C 0.118 3.882 5 C -0.320 4.320 6 C 0.595 3.405 7 O -0.568 6.568 8 N -0.701 5.701 9 C 0.130 3.870 10 C 0.069 3.931 11 H 0.078 0.922 12 C -0.148 4.148 13 N -0.527 5.527 14 C 0.029 3.971 15 C 0.054 3.946 16 C 0.444 3.556 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.327 4.327 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.988 3.012 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.273 1.273 27 S 0.198 5.802 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.190 0.810 32 H 0.411 0.589 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.034 0.966 41 H 0.117 0.883 42 H 0.067 0.933 43 H 0.395 0.605 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.595 15.344 -9.314 17.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.212 4.212 3 N -0.219 5.219 4 C -0.041 4.041 5 C -0.445 4.445 6 C 0.381 3.619 7 O -0.450 6.450 8 N -0.353 5.353 9 C 0.006 3.994 10 C -0.039 4.039 11 H 0.095 0.905 12 C -0.206 4.206 13 N -0.253 5.253 14 C -0.119 4.119 15 C -0.077 4.077 16 C 0.231 3.769 17 O -0.496 6.496 18 N -0.214 5.214 19 C -0.457 4.457 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.813 3.187 24 H -0.196 1.196 25 H -0.199 1.199 26 H -0.198 1.198 27 S 0.455 5.545 28 H 0.129 0.871 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.207 0.793 32 H 0.248 0.752 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.135 0.865 42 H 0.085 0.915 43 H 0.229 0.771 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.358 15.719 -8.948 18.138 hybrid contribution 0.927 -0.641 0.660 1.306 sum -0.431 15.078 -8.288 17.211 Atomic orbital electron populations 1.20782 0.82036 1.05883 1.05844 1.28221 1.03834 0.90710 0.98479 1.66316 1.04708 1.32015 1.18895 1.22304 0.91185 0.95607 0.94976 1.25705 0.98329 0.98549 1.21881 1.16861 0.86205 0.82731 0.76105 1.90792 1.45368 1.56078 1.52751 1.45813 1.10438 1.05665 1.73336 1.21533 0.82147 0.92970 1.02744 1.22056 0.96744 0.92740 0.92394 0.90471 1.21945 1.01717 1.02394 0.94504 1.61559 1.53371 1.06821 1.03526 1.22371 0.97685 1.00941 0.90920 1.21817 0.96856 0.88611 1.00398 1.20750 0.87407 0.82172 0.86578 1.90477 1.52278 1.57915 1.48968 1.41935 1.34974 1.05905 1.38580 1.19625 1.15206 0.91411 1.19468 0.90272 1.25969 1.00177 0.95710 0.99402 1.69666 1.41390 1.04227 1.41053 0.84989 0.78087 0.77497 0.78160 1.19633 1.19894 1.19833 1.84312 0.95288 1.10239 1.64648 0.87111 0.88019 0.88139 0.79273 0.75223 0.91780 0.89270 0.91388 0.89878 0.92609 0.91632 0.92527 0.94741 0.86550 0.91545 0.77128 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 10.46 71.23 0.75 -0.18 16 2 C 0.06 1.17 7.39 88.46 0.65 1.82 16 3 N -0.50 -11.68 10.51 -190.30 -2.00 -13.68 16 4 C 0.12 2.86 11.09 84.23 0.93 3.79 16 5 C -0.32 -7.98 6.48 23.88 0.15 -7.83 16 6 C 0.60 16.37 7.79 86.45 0.67 17.04 16 7 O -0.57 -18.52 16.86 -4.31 -0.07 -18.59 16 8 N -0.70 -17.08 5.07 -467.09 -2.37 -19.45 16 9 C 0.13 2.77 4.62 86.38 0.40 3.17 16 10 C 0.07 1.39 2.32 44.92 0.10 1.49 16 11 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 12 C -0.15 -2.59 8.86 71.98 0.64 -1.95 16 13 N -0.53 -14.76 3.73 -901.62 -3.36 -18.12 16 14 C 0.03 0.87 8.58 127.69 1.10 1.96 16 15 C 0.05 1.67 5.26 85.56 0.45 2.12 16 16 C 0.44 19.63 7.41 87.66 0.65 20.28 16 17 O -0.61 -31.39 13.98 -3.06 -0.04 -31.44 16 18 N -0.58 -28.12 5.29 -306.98 -1.62 -29.74 16 19 C -0.33 -17.92 9.68 84.04 0.81 -17.11 16 20 H 0.08 4.63 7.16 -2.91 -0.02 4.60 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -48.59 13.05 21.66 0.28 -48.30 16 23 Si 0.99 41.91 29.55 68.60 2.03 43.94 16 24 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 S 0.20 4.10 22.31 -56.49 -1.26 2.84 16 28 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.19 4.22 8.06 -2.91 -0.02 4.19 16 32 H 0.41 10.21 6.60 -92.71 -0.61 9.60 16 33 H 0.06 1.47 6.81 -2.39 -0.02 1.45 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.17 6.20 -2.39 -0.01 1.16 16 36 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.05 1.08 7.31 -2.39 -0.02 1.06 16 38 H 0.06 1.89 6.75 -2.39 -0.02 1.88 16 39 H 0.06 2.17 5.79 -2.39 -0.01 2.16 16 40 H 0.03 0.89 8.12 -2.39 -0.02 0.87 16 41 H 0.12 3.10 5.82 -2.39 -0.01 3.08 16 42 H 0.07 1.85 8.12 -2.39 -0.02 1.83 16 43 H 0.40 18.37 7.90 -92.71 -0.73 17.64 16 44 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -69.83 378.89 -0.93 -70.76 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.29 Total: 37.39 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 7.78 Total: 24.39 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -9.07 Total: -129.30 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.12 Total: -50.03 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.26 Total: 2.84 kcal Total: -69.83 -0.93 -70.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734028610.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.288 kcal (2) G-P(sol) polarization free energy of solvation -69.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds