Wall clock time and date at job start Sat Apr 11 2020 05:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29946 * 126.28610 * 2 1 4 4 O 1.21298 * 110.25139 * 179.97438 * 3 2 1 5 5 C 1.33647 * 109.81008 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.54856 * 179.97438 * 5 4 3 7 7 N 1.46894 * 109.47561 * 269.97650 * 6 5 4 8 8 C 1.46897 * 111.00110 * 180.02562 * 7 6 5 9 9 H 1.08998 * 110.64046 * 34.30152 * 8 7 6 10 10 C 1.55154 * 110.72210 * 271.15569 * 8 7 6 11 11 C 1.54910 * 101.58130 * 206.13394 * 10 8 7 12 12 N 1.47425 * 104.83123 * 37.01248 * 11 10 8 13 13 C 1.34778 * 125.64453 * 155.83713 * 12 11 10 14 14 O 1.21279 * 119.99704 * 180.02562 * 13 12 11 15 15 C 1.50705 * 120.00361 * 0.02562 * 13 12 11 16 16 S 1.80994 * 109.47091 * 180.02562 * 15 13 12 17 17 C 1.76200 * 99.99819 * 180.02562 * 16 15 13 18 18 H 1.08007 * 120.00090 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99680 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00147 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 119.99631 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47055 * 89.99854 * 21 19 17 23 23 H 1.48497 * 109.46986 * 209.99798 * 21 19 17 24 24 H 1.48506 * 109.47005 * 329.99744 * 21 19 17 25 25 C 1.47317 * 108.73638 * 335.71384 * 12 11 10 26 26 H 1.08993 * 109.85060 * 120.61647 * 25 12 11 27 27 C 1.53000 * 110.06128 * 241.87637 * 25 12 11 28 28 N 1.31130 * 106.89587 * 359.76618 * 5 4 3 29 29 H 1.09002 * 109.47152 * 90.02565 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.02665 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.02646 * 1 2 3 32 32 H 1.08996 * 109.47173 * 29.98261 * 6 5 4 33 33 H 1.09006 * 109.46669 * 149.97670 * 6 5 4 34 34 H 1.00896 * 111.00266 * 56.04314 * 7 6 5 35 35 H 1.08999 * 111.00155 * 324.21061 * 10 8 7 36 36 H 1.09005 * 111.00273 * 88.02065 * 10 8 7 37 37 H 1.09001 * 110.35984 * 155.84833 * 11 10 8 38 38 H 1.08996 * 110.36807 * 278.06060 * 11 10 8 39 39 H 1.08996 * 109.46881 * 300.00706 * 15 13 12 40 40 H 1.09003 * 109.46597 * 60.00358 * 15 13 12 41 41 H 0.97004 * 119.99713 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.47138 * 177.73142 * 27 25 12 43 43 H 1.09004 * 109.47119 * 297.73367 * 27 25 12 44 44 H 1.09002 * 109.47788 * 57.72906 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7970 -1.4369 0.0003 7 7 5.2085 -1.7023 -1.3846 8 6 6.4429 -2.4977 -1.4238 9 1 6.4733 -3.2011 -0.5917 10 6 7.6908 -1.5758 -1.4094 11 6 8.7426 -2.4651 -2.1182 12 7 7.9895 -3.1781 -3.1661 13 6 8.5121 -3.6911 -4.2975 14 8 7.7948 -4.2598 -5.0931 15 6 9.9875 -3.5582 -4.5741 16 16 10.3773 -4.3413 -6.1586 17 6 12.1131 -4.0465 -6.2268 18 1 12.6030 -3.5172 -5.4228 19 6 12.8507 -4.4936 -7.3143 20 7 12.2535 -5.1373 -8.2948 21 14 14.6912 -4.1816 -7.3862 22 1 15.4104 -5.3137 -6.7488 23 1 15.1175 -4.0594 -8.8034 24 1 15.0087 -2.9237 -6.6635 25 6 6.5717 -3.2398 -2.7708 26 1 5.9557 -2.7495 -3.5246 27 6 6.1358 -4.6971 -2.6059 28 7 2.3030 -1.0841 0.0048 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3633 0.8902 0.5134 31 1 -0.3633 -0.8898 0.5143 32 1 5.5843 -0.8853 0.5139 33 1 4.6207 -2.3818 0.5144 34 1 5.3157 -0.8423 -1.9012 35 1 7.5076 -0.6617 -1.9741 36 1 7.9958 -1.3473 -0.3882 37 1 9.5222 -1.8478 -2.5647 38 1 9.1778 -3.1733 -1.4131 39 1 10.2558 -2.5025 -4.6152 40 1 10.5516 -4.0457 -3.7789 41 1 12.7691 -5.4500 -9.0546 42 1 5.0979 -4.7306 -2.2747 43 1 6.2295 -5.2146 -3.5606 44 1 6.7695 -5.1843 -1.8649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734388573.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:50 Heat of formation + Delta-G solvation = 12.675303 kcal Electronic energy + Delta-G solvation = -26304.104460 eV Core-core repulsion = 22385.071276 eV Total energy + Delta-G solvation = -3919.033183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.64358 -41.25631 -39.07706 -37.18712 -36.52032 -34.58553 -34.02939 -32.70743 -31.75834 -30.23949 -29.87219 -27.85781 -27.63087 -25.43282 -24.51524 -23.84531 -22.37890 -22.00205 -20.35628 -19.44850 -19.23516 -18.51654 -18.07059 -17.54840 -16.98208 -16.88009 -16.31698 -16.17059 -15.71214 -15.43508 -15.01639 -14.72107 -14.62061 -14.47633 -14.41825 -14.31394 -14.00540 -13.78755 -13.56732 -13.36540 -13.24919 -13.15771 -13.03734 -12.88514 -12.74600 -12.63636 -12.48782 -12.39118 -12.07876 -11.98606 -11.75956 -11.66513 -11.14041 -11.00694 -10.85091 -10.27075 -9.67705 -9.51030 -8.67518 -8.34360 -6.13016 0.06726 1.14927 1.25298 1.42930 1.45625 1.56297 1.61854 1.76015 2.09822 2.27749 2.66520 2.99799 3.04898 3.10787 3.25574 3.51658 3.59360 3.88766 3.95088 4.06163 4.24132 4.27843 4.28222 4.36246 4.42327 4.43870 4.46966 4.55944 4.61804 4.66028 4.72794 4.76055 4.81189 4.93155 5.02714 5.09050 5.09973 5.14118 5.30711 5.41620 5.49388 5.82091 6.16609 6.19806 6.45117 7.06676 7.13290 7.18304 8.74894 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.029902 B = 0.001805 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.156504 B =15505.990864 C =15814.869739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.158 3.842 3 N -0.410 5.410 4 O 0.072 5.928 5 C 0.191 3.809 6 C 0.159 3.841 7 N -0.686 5.686 8 C 0.103 3.897 9 H 0.127 0.873 10 C -0.152 4.152 11 C 0.089 3.911 12 N -0.615 5.615 13 C 0.545 3.455 14 O -0.565 6.565 15 C -0.119 4.119 16 S -0.154 6.154 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.999 3.001 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.257 1.257 25 C 0.140 3.860 26 H 0.058 0.942 27 C -0.152 4.152 28 N -0.491 5.491 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.134 0.866 34 H 0.353 0.647 35 H 0.081 0.919 36 H 0.126 0.874 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.271 0.729 42 H 0.083 0.917 43 H 0.028 0.972 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.870 11.797 25.869 32.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.115 4.115 3 N -0.121 5.121 4 O 0.015 5.985 5 C -0.030 4.030 6 C 0.029 3.971 7 N -0.319 5.319 8 C -0.007 4.007 9 H 0.145 0.855 10 C -0.191 4.191 11 C -0.033 4.033 12 N -0.350 5.350 13 C 0.333 3.667 14 O -0.443 6.443 15 C -0.270 4.270 16 S 0.074 5.926 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.181 1.181 25 C 0.036 3.964 26 H 0.076 0.924 27 C -0.210 4.210 28 N -0.226 5.226 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.128 0.872 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.100 0.900 36 H 0.144 0.856 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.101 0.899 43 H 0.048 0.952 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.966 10.829 24.430 32.201 hybrid contribution 2.409 1.120 0.151 2.661 sum -15.557 11.949 24.581 31.449 Atomic orbital electron populations 1.20330 0.80890 1.05744 1.05297 1.26607 1.02117 0.83156 0.99603 1.74641 0.89914 1.24747 1.22753 1.85256 1.22114 1.25423 1.65722 1.29261 0.97584 0.81684 0.94504 1.20623 0.86334 0.98686 0.91440 1.60142 1.34138 1.25256 1.12342 1.22532 0.86751 0.95333 0.96116 0.85475 1.23563 0.94407 0.97690 1.03425 1.22616 0.95741 0.95466 0.89453 1.48583 1.10073 1.56720 1.19639 1.19749 0.89000 0.77650 0.80283 1.90684 1.62314 1.43851 1.47481 1.23305 0.95335 1.05499 1.02857 1.85622 1.10009 1.74907 1.22093 1.23197 0.92926 1.43311 1.09914 0.89847 1.26143 1.05086 0.93954 0.93971 1.70191 1.38535 1.36778 1.09303 0.84944 0.75874 0.79290 0.77808 1.19232 1.20371 1.18084 1.21579 0.80894 0.96808 0.97119 0.92418 1.22005 1.02381 0.95401 1.01214 1.71942 1.00655 1.29768 1.20230 0.88403 0.88381 0.87898 0.87234 0.84820 0.82693 0.90010 0.85624 0.90110 0.89182 0.87715 0.87534 0.92007 0.89864 0.95242 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.64 10.51 71.24 0.75 0.10 16 2 C 0.16 2.78 8.22 138.46 1.14 3.92 16 3 N -0.41 -8.06 12.16 -60.32 -0.73 -8.80 16 4 O 0.07 1.18 11.31 74.80 0.85 2.03 16 5 C 0.19 2.61 8.03 88.38 0.71 3.31 16 6 C 0.16 0.91 6.18 85.56 0.53 1.44 16 7 N -0.69 -6.70 6.28 -489.46 -3.07 -9.77 16 8 C 0.10 1.03 2.77 46.10 0.13 1.16 16 9 H 0.13 0.75 7.56 -2.39 -0.02 0.73 16 10 C -0.15 -1.12 6.67 31.99 0.21 -0.90 16 11 C 0.09 1.35 6.69 86.86 0.58 1.93 16 12 N -0.61 -15.90 3.08 -787.35 -2.42 -18.32 16 13 C 0.55 20.85 7.67 87.66 0.67 21.52 16 14 O -0.56 -27.16 14.94 -3.03 -0.05 -27.21 16 15 C -0.12 -4.79 5.16 71.24 0.37 -4.42 16 16 S -0.15 -8.63 20.57 -56.49 -1.16 -9.79 16 17 C -0.55 -31.20 9.50 67.95 0.65 -30.55 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -56.27 13.22 21.65 0.29 -55.98 16 21 Si 1.00 43.41 29.55 68.60 2.03 45.43 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 25 C 0.14 3.01 3.22 45.29 0.15 3.16 16 26 H 0.06 1.54 8.03 -2.39 -0.02 1.52 16 27 C -0.15 -3.55 9.11 71.98 0.66 -2.90 16 28 N -0.49 -8.95 11.55 -303.20 -3.50 -12.45 16 29 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.13 0.50 8.08 -2.38 -0.02 0.48 16 34 H 0.35 3.50 8.25 -89.70 -0.74 2.76 16 35 H 0.08 0.66 7.79 -2.39 -0.02 0.64 16 36 H 0.13 0.08 8.14 -2.38 -0.02 0.06 16 37 H 0.08 1.26 7.48 -2.39 -0.02 1.24 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 3.82 7.85 -2.40 -0.02 3.81 16 40 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 41 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 42 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.03 0.94 6.94 -2.39 -0.02 0.93 16 44 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -85.31 384.56 -0.50 -85.80 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 0.28 Total: 10.08 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 7.00 Total: -1.02 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -9.45 Total: -105.32 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: 0.80 Total: -25.18 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -85.31 -0.50 -85.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734388573.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.477 kcal (2) G-P(sol) polarization free energy of solvation -85.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds