Wall clock time and date at job start Sat Apr 11 2020 05:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29947 * 126.28909 * 2 1 4 4 O 1.21306 * 110.25249 * 180.02562 * 3 2 1 5 5 C 1.33645 * 109.80992 * 359.97438 * 4 3 2 6 6 C 1.50693 * 126.55097 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47203 * 270.02080 * 6 5 4 8 8 C 1.46892 * 111.00251 * 179.97438 * 7 6 5 9 9 H 1.09005 * 110.64067 * 36.69059 * 8 7 6 10 10 C 1.55154 * 110.72235 * 273.54702 * 8 7 6 11 11 C 1.54908 * 101.58348 * 205.95852 * 10 8 7 12 12 N 1.47426 * 104.83177 * 37.00798 * 11 10 8 13 13 C 1.34780 * 125.64645 * 155.60647 * 12 11 10 14 14 O 1.21289 * 119.99749 * 180.02562 * 13 12 11 15 15 C 1.50692 * 120.00414 * 0.02590 * 13 12 11 16 16 S 1.81000 * 109.47401 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99905 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00249 * 0.02562 * 17 16 15 19 19 C 1.38798 * 119.99879 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00111 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99955 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47459 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46872 * 120.00284 * 21 19 17 24 24 H 1.48499 * 109.47121 * 239.99977 * 21 19 17 25 25 C 1.47024 * 108.70449 * 335.87274 * 12 11 10 26 26 H 1.09000 * 109.88248 * 241.64107 * 25 12 11 27 27 C 1.52991 * 109.88199 * 120.47677 * 25 12 11 28 28 N 1.31132 * 106.89974 * 0.22556 * 5 4 3 29 29 H 1.09006 * 109.47365 * 89.97735 * 1 2 3 30 30 H 1.09000 * 109.47569 * 209.97765 * 1 2 3 31 31 H 1.09003 * 109.47454 * 329.97986 * 1 2 3 32 32 H 1.09001 * 109.47590 * 150.02353 * 6 5 4 33 33 H 1.09001 * 109.47557 * 30.01667 * 6 5 4 34 34 H 1.00904 * 110.99848 * 56.04161 * 7 6 5 35 35 H 1.09000 * 111.00849 * 87.88034 * 10 8 7 36 36 H 1.08998 * 111.03378 * 324.04484 * 10 8 7 37 37 H 1.09004 * 110.37002 * 278.17028 * 11 10 8 38 38 H 1.09000 * 110.37209 * 155.84776 * 11 10 8 39 39 H 1.08999 * 109.46911 * 300.00252 * 15 13 12 40 40 H 1.09007 * 109.47390 * 59.99552 * 15 13 12 41 41 H 0.97001 * 120.00554 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.47529 * 61.45836 * 27 25 12 43 43 H 1.09003 * 109.47199 * 181.45679 * 27 25 12 44 44 H 1.09003 * 109.47729 * 301.45303 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2760 1.0474 0.0000 4 8 3.4419 0.7123 -0.0005 5 6 3.5298 -0.6212 -0.0003 6 6 4.7968 -1.4371 -0.0014 7 7 5.2075 -1.7020 -1.3867 8 6 6.4424 -2.4965 -1.4269 9 1 6.4548 -3.2287 -0.6195 10 6 7.6897 -1.5766 -1.3529 11 6 8.7580 -2.4430 -2.0654 12 7 8.0298 -3.1208 -3.1534 13 6 8.5782 -3.5931 -4.2904 14 8 7.8799 -4.1355 -5.1207 15 6 10.0587 -3.4475 -4.5302 16 16 10.4853 -4.1757 -6.1314 17 6 12.2210 -3.8733 -6.1523 18 1 12.6917 -3.3707 -5.3204 19 6 12.9836 -4.2822 -7.2376 20 7 12.4100 -4.8952 -8.2514 21 14 14.8236 -3.9610 -7.2602 22 1 15.2194 -3.2613 -6.0116 23 1 15.5504 -5.2526 -7.3550 24 1 15.1640 -3.1144 -8.4318 25 6 6.6055 -3.1903 -2.7957 26 1 6.2919 -4.2317 -2.7232 27 6 5.7681 -2.4641 -3.8503 28 7 2.3030 -1.0842 -0.0046 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 4.6209 -2.3822 0.5125 33 1 5.5846 -0.8856 0.5119 34 1 5.3144 -0.8417 -1.9030 35 1 7.9710 -1.3822 -0.3179 36 1 7.5205 -0.6440 -1.8912 37 1 9.1750 -3.1756 -1.3742 38 1 9.5479 -1.8123 -2.4730 39 1 10.3247 -2.3905 -4.5288 40 1 10.6070 -3.9610 -3.7402 41 1 12.9428 -5.1806 -9.0101 42 1 5.8983 -2.9515 -4.8165 43 1 4.7165 -2.4974 -3.5654 44 1 6.0927 -1.4259 -3.9203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734388577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:58 Heat of formation + Delta-G solvation = 44.824101 kcal Electronic energy + Delta-G solvation = -26427.835033 eV Core-core repulsion = 22510.195926 eV Total energy + Delta-G solvation = -3917.639107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.99978 -40.30856 -38.01841 -36.53218 -35.73633 -33.32582 -32.43731 -31.55353 -30.86157 -29.63011 -28.65111 -26.83592 -25.50618 -25.17364 -23.95398 -23.04139 -21.83182 -20.80185 -18.95899 -18.54954 -18.02373 -17.72440 -16.93576 -16.42055 -16.20948 -15.30611 -15.17701 -14.84236 -14.80665 -14.20684 -14.11785 -14.03523 -13.93874 -13.78587 -13.33337 -13.08824 -12.98083 -12.84246 -12.63228 -12.56453 -12.45581 -12.21410 -11.85797 -11.80367 -11.53573 -11.42686 -11.08643 -11.05644 -11.02681 -10.92789 -10.76083 -10.37866 -9.81151 -9.32729 -9.08149 -9.04853 -8.52105 -8.23117 -6.50636 -6.22421 -3.92949 0.67001 1.78517 2.28880 2.85616 3.07571 3.17521 3.20790 3.25129 3.30189 3.54254 3.60737 3.69091 4.17947 4.20718 4.22455 4.39521 4.57315 4.61524 4.85276 4.90987 4.93175 4.98779 5.05025 5.05758 5.12834 5.15861 5.32717 5.39133 5.45221 5.46915 5.47873 5.59380 5.62564 5.68739 5.87169 5.90714 6.06447 6.12536 6.26436 6.40183 6.54800 6.69190 7.58943 7.67658 7.74552 8.34561 8.58174 9.22964 10.85047 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.033352 B = 0.001813 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.340051 B =15441.978473 C =15796.858992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.167 3.833 3 N -0.384 5.384 4 O 0.076 5.924 5 C 0.184 3.816 6 C 0.153 3.847 7 N -0.668 5.668 8 C 0.085 3.915 9 H 0.102 0.898 10 C -0.166 4.166 11 C 0.104 3.896 12 N -0.625 5.625 13 C 0.550 3.450 14 O -0.511 6.511 15 C -0.147 4.147 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.148 3.852 26 H 0.079 0.921 27 C -0.156 4.156 28 N -0.463 5.463 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.353 0.647 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.268 0.732 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.627 10.187 22.083 30.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.106 4.106 3 N -0.093 5.093 4 O 0.018 5.982 5 C -0.038 4.038 6 C 0.023 3.977 7 N -0.302 5.302 8 C -0.026 4.026 9 H 0.120 0.880 10 C -0.206 4.206 11 C -0.020 4.020 12 N -0.363 5.363 13 C 0.339 3.661 14 O -0.385 6.385 15 C -0.298 4.298 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.044 3.956 26 H 0.097 0.903 27 C -0.214 4.214 28 N -0.197 5.197 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.139 0.861 33 H 0.092 0.908 34 H 0.174 0.826 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.681 9.224 20.520 29.892 hybrid contribution 2.875 1.545 1.208 3.481 sum -16.806 10.769 21.728 29.505 Atomic orbital electron populations 1.20158 0.82859 1.04673 1.04507 1.25980 1.00728 0.83444 1.00427 1.74658 0.89348 1.23921 1.21344 1.85298 1.22510 1.24876 1.65551 1.28641 0.96995 0.81925 0.96215 1.20388 0.86900 0.97983 0.92449 1.60407 1.34103 1.25010 1.10640 1.22635 0.86148 0.95454 0.98342 0.87987 1.23552 0.96487 0.98990 1.01566 1.22183 0.95141 0.95341 0.89353 1.48606 1.07976 1.60534 1.19198 1.19980 0.89692 0.77127 0.79338 1.90703 1.62995 1.41624 1.43132 1.23514 0.93665 1.05293 1.07286 1.85415 1.08295 1.75616 1.14028 1.22900 0.92790 1.44759 1.07875 0.90908 1.24990 0.99419 0.94558 0.94608 1.70025 1.36152 1.36867 1.07187 0.86121 0.83042 0.78154 0.78199 1.19633 1.20557 1.20565 1.21329 0.81541 0.99807 0.92963 0.90309 1.21981 1.00068 0.99652 0.99706 1.71928 0.99673 1.29160 1.18937 0.89158 0.88922 0.89519 0.86095 0.90843 0.82644 0.89651 0.90161 0.91129 0.90190 0.89431 0.89370 0.92224 0.91080 0.90672 0.93415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.00 0.38 0.03 16 2 C 0.17 1.53 8.22 -156.37 -1.28 0.24 16 3 N -0.38 -3.91 12.16 30.90 0.38 -3.53 16 4 O 0.08 0.68 11.31 18.09 0.20 0.89 16 5 C 0.18 1.43 8.03 -13.06 -0.10 1.32 16 6 C 0.15 0.72 6.17 -4.98 -0.03 0.69 16 7 N -0.67 -4.17 4.89 -106.06 -0.52 -4.69 16 8 C 0.08 0.57 3.10 -65.88 -0.20 0.36 16 9 H 0.10 0.55 7.89 -51.93 -0.41 0.14 16 10 C -0.17 -1.00 6.63 -24.58 -0.16 -1.16 16 11 C 0.10 0.96 6.70 -2.53 -0.02 0.94 16 12 N -0.62 -8.39 3.08 -163.02 -0.50 -8.89 16 13 C 0.55 10.31 7.64 -10.99 -0.08 10.23 16 14 O -0.51 -11.57 14.75 5.55 0.08 -11.49 16 15 C -0.15 -2.96 5.16 36.00 0.19 -2.77 16 16 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 17 C -0.53 -15.16 9.50 30.94 0.29 -14.86 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 21 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C 0.15 1.66 3.48 -66.95 -0.23 1.42 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 27 C -0.16 -1.89 8.19 37.15 0.30 -1.59 16 28 N -0.46 -4.47 11.55 -9.86 -0.11 -4.58 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.12 0.48 8.09 -51.93 -0.42 0.06 16 33 H 0.07 0.18 8.13 -51.93 -0.42 -0.24 16 34 H 0.35 2.22 7.54 -39.29 -0.30 1.92 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.50 7.82 -51.93 -0.41 0.09 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.76 7.47 -51.93 -0.39 0.37 16 39 H 0.09 1.64 7.84 -51.92 -0.41 1.23 16 40 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.07 1.12 6.73 -51.93 -0.35 0.77 16 43 H 0.07 0.83 7.45 -51.93 -0.39 0.44 16 44 H 0.05 0.55 7.86 -51.93 -0.41 0.14 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -36.27 381.15 -8.68 -44.95 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: -6.40 Total: -2.32 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.05 Total: -3.15 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.03 Total: -47.04 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.29 Total: -10.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.27 -8.68 -44.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734388577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.778 kcal (2) G-P(sol) polarization free energy of solvation -36.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds