Wall clock time and date at job start Sat Apr 11 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46787 * 2 1 4 4 C 1.52994 * 109.47062 * 120.00103 * 2 1 3 5 5 H 1.09000 * 109.47017 * 299.99917 * 4 2 1 6 6 C 1.52997 * 109.47404 * 60.00274 * 4 2 1 7 7 N 1.46505 * 109.47212 * 174.99693 * 6 4 2 8 8 C 1.34771 * 119.99622 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00597 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99622 * 179.97438 * 8 7 6 11 11 S 1.81002 * 109.47156 * 180.02562 * 10 8 7 12 12 C 1.76204 * 100.00151 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99845 * 359.97438 * 12 11 10 14 14 C 1.38796 * 120.00054 * 180.02562 * 12 11 10 15 15 N 1.31631 * 120.00100 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99948 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47203 * 90.00024 * 16 14 12 18 18 H 1.48506 * 109.46989 * 210.00023 * 16 14 12 19 19 H 1.48506 * 109.47313 * 329.99924 * 16 14 12 20 20 N 1.46500 * 109.46849 * 180.02562 * 4 2 1 21 21 C 1.34779 * 120.00196 * 84.99779 * 20 4 2 22 22 O 1.21606 * 119.99824 * 0.02562 * 21 20 4 23 23 C 1.47406 * 119.99985 * 179.97438 * 21 20 4 24 24 N 1.31618 * 125.86736 * 359.69928 * 23 21 20 25 25 C 1.33093 * 109.09791 * 179.88679 * 24 23 21 26 26 C 1.35566 * 108.35122 * 0.37220 * 25 24 23 27 27 N 1.35400 * 107.16086 * 359.77274 * 26 25 24 28 28 H 0.96994 * 126.44668 * 180.02562 * 27 26 25 29 29 H 1.09000 * 109.47128 * 299.99497 * 1 2 3 30 30 H 1.08998 * 109.47211 * 60.00065 * 1 2 3 31 31 H 1.08996 * 109.46508 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47128 * 240.00503 * 2 1 3 33 33 H 1.08995 * 109.47630 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47754 * 300.00409 * 3 2 1 35 35 H 1.09000 * 109.47325 * 60.00062 * 3 2 1 36 36 H 1.09002 * 109.47153 * 54.99686 * 6 4 2 37 37 H 1.09001 * 109.46832 * 294.99876 * 6 4 2 38 38 H 0.96996 * 119.99606 * 0.02562 * 7 6 4 39 39 H 1.09001 * 109.47380 * 300.00190 * 10 8 7 40 40 H 1.09002 * 109.47060 * 60.00278 * 10 8 7 41 41 H 0.96999 * 120.00126 * 180.02562 * 15 14 12 42 42 H 0.96998 * 120.00051 * 264.99732 * 20 4 2 43 43 H 1.08006 * 125.82898 * 180.12437 * 25 24 23 44 44 H 1.07996 * 126.42264 * 179.79845 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5302 -2.1637 1.2492 7 7 2.1144 -2.8883 2.3806 8 6 1.8055 -4.1844 2.5825 9 8 1.0443 -4.7513 1.8275 10 6 2.4069 -4.9299 3.7460 11 16 1.8036 -6.6364 3.7461 12 6 2.6400 -7.2566 5.1675 13 1 3.2915 -6.6094 5.7359 14 6 2.4623 -8.5772 5.5561 15 7 1.6694 -9.3664 4.8625 16 14 3.3496 -9.2349 7.0626 17 1 2.5036 -9.0273 8.2653 18 1 3.6136 -10.6858 6.8874 19 1 4.6371 -8.5145 7.2327 20 7 3.5051 -0.7207 1.2494 21 6 4.1785 0.3374 1.7430 22 8 3.5700 1.2913 2.1885 23 6 5.6526 0.3376 1.7437 24 7 6.4241 -0.6313 1.2985 25 6 7.6983 -0.2811 1.4574 26 6 7.7352 0.9473 2.0296 27 7 6.4529 1.3417 2.2121 28 1 6.1576 2.1794 2.6017 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4427 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.8185 -2.6511 0.3178 37 1 0.4438 -2.1651 1.3388 38 1 2.7229 -2.4348 2.9847 39 1 3.4932 -4.9290 3.6558 40 1 2.1193 -4.4424 4.6776 41 1 1.5450 -10.2892 5.1343 42 1 3.9904 -1.4818 0.8944 43 1 8.5566 -0.8759 1.1814 44 1 8.6214 1.5067 2.2906 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738309314.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:11 Heat of formation + Delta-G solvation = -23.269546 kcal Electronic energy + Delta-G solvation = -26763.653536 eV Core-core repulsion = 22843.061667 eV Total energy + Delta-G solvation = -3920.591869 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62111 -40.39341 -39.03240 -37.17291 -34.24159 -33.81895 -32.89206 -32.41132 -30.49435 -29.85907 -27.97649 -27.10098 -25.47537 -24.29221 -22.90254 -21.97457 -20.97157 -20.65396 -20.14551 -19.19139 -17.83517 -17.03389 -16.70940 -16.42524 -16.08277 -15.83925 -15.14809 -14.98803 -14.78713 -14.75733 -14.33424 -14.15609 -14.00990 -13.85995 -13.45724 -13.36645 -12.94451 -12.87599 -12.53587 -12.37081 -12.13588 -11.72626 -11.61488 -11.14470 -11.05001 -11.00759 -10.95916 -10.74468 -10.72146 -10.69562 -10.59350 -9.80380 -9.52409 -9.36875 -9.05613 -9.00577 -8.92098 -8.22027 -6.47969 -6.20058 -3.90320 0.94865 2.14033 2.20095 2.98793 3.04482 3.08304 3.13391 3.23732 3.29139 3.33362 3.70293 3.90964 4.22070 4.32467 4.51113 4.57734 4.69903 4.82488 4.95123 4.99756 5.04159 5.15153 5.16526 5.35347 5.45793 5.46401 5.51433 5.58941 5.65277 5.68686 5.80518 5.83418 5.91159 5.93885 6.08663 6.13487 6.16749 6.20449 6.56027 6.66347 6.99161 7.40935 7.61357 7.66983 7.74227 8.37063 8.59753 9.25391 10.87396 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.002644 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.976221 B =10586.028188 C =12700.532773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 C -0.138 4.138 4 C 0.140 3.860 5 H 0.100 0.900 6 C 0.112 3.888 7 N -0.739 5.739 8 C 0.533 3.467 9 O -0.516 6.516 10 C -0.154 4.154 11 S -0.059 6.059 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 N -0.699 5.699 21 C 0.610 3.390 22 O -0.536 6.536 23 C 0.140 3.860 24 N -0.439 5.439 25 C -0.025 4.025 26 C -0.023 4.023 27 N -0.525 5.525 28 H 0.430 0.570 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.416 0.584 43 H 0.180 0.820 44 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.833 26.190 -8.555 28.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.123 4.123 3 C -0.195 4.195 4 C 0.035 3.965 5 H 0.118 0.882 6 C -0.013 4.013 7 N -0.395 5.395 8 C 0.320 3.680 9 O -0.390 6.390 10 C -0.304 4.304 11 S 0.168 5.832 12 C -0.683 4.683 13 H 0.090 0.910 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 N -0.351 5.351 21 C 0.394 3.606 22 O -0.412 6.412 23 C -0.121 4.121 24 N -0.161 5.161 25 C -0.179 4.179 26 C -0.162 4.162 27 N -0.127 5.127 28 H 0.269 0.731 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.078 0.922 42 H 0.253 0.747 43 H 0.197 0.803 44 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.675 24.972 -9.870 27.669 hybrid contribution 2.426 1.253 2.500 3.702 sum 9.101 26.225 -7.369 28.721 Atomic orbital electron populations 1.21902 0.93972 1.02619 1.02356 1.21487 0.96552 0.96961 0.97307 1.21861 1.00840 0.95061 1.01753 1.21470 0.78548 0.96060 1.00387 0.88236 1.21663 0.99449 0.89380 0.90772 1.45986 1.50650 1.11863 1.30955 1.20296 0.80863 0.80884 0.85989 1.90706 1.34692 1.67109 1.46482 1.23533 1.04009 1.04617 0.98283 1.85372 1.61732 0.97761 1.38379 1.22870 1.32569 0.99182 1.13708 0.90953 1.24986 0.95322 0.95747 0.97522 1.70017 1.35205 1.06709 1.38388 0.86172 0.79649 0.78075 0.81626 1.20293 1.20751 1.19693 1.45731 1.07138 1.20258 1.61969 1.16376 0.83044 0.83140 0.78017 1.90863 1.68490 1.34417 1.47416 1.22667 0.93796 0.87941 1.07716 1.70240 1.02812 1.25430 1.17652 1.22561 0.94797 0.95382 1.05118 1.23038 0.87285 0.99508 1.06406 1.42946 1.06420 1.18062 1.45273 0.73073 0.92235 0.92159 0.91734 0.90481 0.93163 0.93218 0.91717 0.90693 0.89448 0.76746 0.89169 0.89285 0.92196 0.74721 0.80269 0.79552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.84 37.16 0.33 -0.79 16 2 C -0.10 -0.83 2.69 -90.62 -0.24 -1.08 16 3 C -0.14 -1.21 7.72 37.16 0.29 -0.92 16 4 C 0.14 1.25 2.00 -67.94 -0.14 1.11 16 5 H 0.10 0.97 7.57 -51.93 -0.39 0.58 16 6 C 0.11 1.21 4.73 -4.04 -0.02 1.19 16 7 N -0.74 -9.67 5.39 -60.29 -0.32 -9.99 16 8 C 0.53 9.82 7.85 -10.99 -0.09 9.73 16 9 O -0.52 -11.46 15.86 5.56 0.09 -11.38 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 12 C -0.54 -15.34 9.50 30.94 0.29 -15.04 16 13 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 14 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 15 N -0.87 -26.27 13.22 55.49 0.73 -25.53 16 16 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 N -0.70 -6.40 4.40 -54.89 -0.24 -6.64 16 21 C 0.61 6.23 6.17 -12.53 -0.08 6.15 16 22 O -0.54 -6.26 14.21 5.27 0.07 -6.18 16 23 C 0.14 1.37 7.95 -154.51 -1.23 0.14 16 24 N -0.44 -4.59 10.89 -11.25 -0.12 -4.72 16 25 C -0.03 -0.20 11.85 -17.96 -0.21 -0.41 16 26 C -0.02 -0.13 12.00 -16.93 -0.20 -0.33 16 27 N -0.53 -3.67 6.14 -10.78 -0.07 -3.74 16 28 H 0.43 2.12 8.96 -40.82 -0.37 1.75 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.49 6.54 -51.93 -0.34 0.15 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.49 5.77 -51.93 -0.30 0.19 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.63 7.53 -51.93 -0.39 0.24 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.09 0.98 6.71 -51.93 -0.35 0.63 16 38 H 0.40 4.52 8.14 -40.82 -0.33 4.18 16 39 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 40 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.42 3.85 8.28 -40.82 -0.34 3.51 16 43 H 0.18 0.99 8.06 -52.48 -0.42 0.56 16 44 H 0.19 0.32 8.06 -52.49 -0.42 -0.10 16 LS Contribution 383.25 15.07 5.78 5.78 Total: -1.00 -36.48 383.25 -8.65 -45.12 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.16 Total: 5.72 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.17 Total: -1.13 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.02 Total: -50.62 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.16 Total: -17.56 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.48 -8.65 -45.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738309314.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.855 kcal (2) G-P(sol) polarization free energy of solvation -36.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds