Wall clock time and date at job start Sat Apr 11 2020 06:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50705 * 109.46570 * 2 1 4 4 C 1.35356 * 126.38572 * 84.94929 * 3 2 1 5 5 C 1.41504 * 105.50739 * 180.02562 * 4 3 2 6 6 C 1.47707 * 126.52256 * 179.97438 * 5 4 3 7 7 O 1.21566 * 119.99962 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00058 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00191 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.46957 * 180.02562 * 9 8 6 11 11 N 1.46502 * 109.46960 * 180.02562 * 10 9 8 12 12 C 1.34778 * 120.00198 * 180.02562 * 11 10 9 13 13 O 1.21280 * 119.99814 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99937 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.46963 * 179.97438 * 14 12 11 16 16 C 1.76197 * 99.99818 * 180.02562 * 15 14 12 17 17 H 1.08005 * 120.00453 * 359.97438 * 16 15 14 18 18 C 1.38795 * 119.99924 * 180.02562 * 16 15 14 19 19 N 1.31635 * 120.00192 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00109 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46909 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47244 * 120.00196 * 20 18 16 23 23 H 1.48501 * 109.46734 * 239.99880 * 20 18 16 24 24 N 1.31810 * 106.95931 * 0.02562 * 5 4 3 25 25 N 1.28474 * 110.07227 * 359.97438 * 24 5 4 26 26 C 1.46498 * 124.88160 * 179.73361 * 25 24 5 27 27 H 1.08997 * 109.47492 * 60.00028 * 1 2 3 28 28 H 1.09001 * 109.46782 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47447 * 299.99874 * 1 2 3 30 30 H 1.08999 * 109.46952 * 240.00685 * 2 1 3 31 31 H 1.08997 * 109.47492 * 119.99972 * 2 1 3 32 32 H 1.08001 * 127.25312 * 0.06213 * 4 3 2 33 33 H 0.97007 * 119.99956 * 0.02562 * 8 6 5 34 34 H 1.09001 * 109.47175 * 300.00670 * 9 8 6 35 35 H 1.09004 * 109.46606 * 60.00536 * 9 8 6 36 36 H 1.09009 * 109.47178 * 299.99816 * 10 9 8 37 37 H 1.08996 * 109.47575 * 60.00266 * 10 9 8 38 38 H 0.97007 * 119.99851 * 359.97438 * 11 10 9 39 39 H 1.09001 * 109.47185 * 299.99997 * 14 12 11 40 40 H 1.09004 * 109.46854 * 60.00021 * 14 12 11 41 41 H 0.97000 * 120.00110 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.47309 * 90.02535 * 26 25 24 43 43 H 1.08998 * 109.47245 * 210.03013 * 26 25 24 44 44 H 1.09007 * 109.47418 * 330.02919 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2093 2.2099 1.0854 5 6 2.6912 3.4419 0.5830 6 6 3.0391 4.6387 1.3757 7 8 2.9193 4.6226 2.5853 8 7 3.4893 5.7487 0.7578 9 6 3.8349 6.9356 1.5440 10 6 4.3146 8.0460 0.6071 11 7 4.6608 9.2327 1.3933 12 6 5.1101 10.3430 0.7754 13 8 5.2283 10.3595 -0.4315 14 6 5.4657 11.5639 1.5842 15 16 6.0332 12.8775 0.4758 16 6 6.3718 14.1451 1.6519 17 1 6.2090 13.9631 2.7040 18 6 6.8466 15.3779 1.2262 19 7 7.0445 15.5999 -0.0561 20 14 7.2048 16.7220 2.4730 21 1 6.9011 16.2241 3.8387 22 1 8.6377 17.1034 2.3919 23 1 6.3598 17.9074 2.1795 24 7 2.7695 3.3187 -0.7270 25 7 2.3885 2.1445 -1.0829 26 6 2.3410 1.6624 -2.4655 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.0228 1.9532 2.1178 33 1 3.5846 5.7617 -0.2075 34 1 2.9566 7.2770 2.0918 35 1 4.6284 6.6863 2.2486 36 1 5.1929 7.7048 0.0590 37 1 3.5210 8.2953 -0.0973 38 1 4.5659 9.2196 2.3586 39 1 4.5875 11.9049 2.1325 40 1 6.2596 11.3147 2.2882 41 1 7.3760 16.4616 -0.3536 42 1 3.2953 1.2030 -2.7231 43 1 1.5441 0.9256 -2.5662 44 1 2.1483 2.5000 -3.1360 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001740480538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:18 Heat of formation + Delta-G solvation = -3.837065 kcal Electronic energy + Delta-G solvation = -25061.144712 eV Core-core repulsion = 21141.395499 eV Total energy + Delta-G solvation = -3919.749213 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.13953 -39.76068 -39.07865 -35.91979 -34.97781 -33.96065 -33.76240 -32.41914 -30.44280 -29.78582 -28.56431 -27.35634 -25.47811 -24.30477 -23.81188 -22.41894 -21.34993 -20.50945 -19.87617 -17.97842 -17.62030 -16.94220 -16.81823 -16.49029 -16.03590 -15.82440 -15.48144 -15.12067 -14.99713 -14.79402 -14.63445 -14.07658 -14.02788 -13.91012 -13.77714 -13.39695 -13.15208 -13.14237 -12.90565 -12.55723 -12.34343 -12.20084 -11.97788 -11.77252 -11.63017 -11.19650 -11.05970 -11.01061 -10.75331 -10.49518 -9.80078 -9.60966 -9.46027 -9.37417 -9.32474 -9.07252 -8.95412 -8.22866 -6.49364 -6.21026 -3.91532 1.19781 1.67713 1.97197 2.61958 3.07075 3.13629 3.15574 3.22717 3.30505 3.37654 3.76156 3.88594 3.98986 4.21169 4.30792 4.40589 4.48771 4.53037 4.65146 4.77397 4.87886 4.89039 4.92475 5.11936 5.14427 5.15472 5.23173 5.26429 5.28710 5.53320 5.59738 5.60280 5.68639 5.79625 5.90288 5.96942 6.07800 6.15142 6.29685 6.53166 7.11734 7.50775 7.60895 7.65128 7.91259 8.36446 8.57194 9.24634 10.86489 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.038750 B = 0.001413 C = 0.001372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.404116 B =19808.734924 C =20399.449625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.054 4.054 3 C 0.013 3.987 4 C -0.175 4.175 5 C -0.016 4.016 6 C 0.608 3.392 7 O -0.531 6.531 8 N -0.714 5.714 9 C 0.109 3.891 10 C 0.111 3.889 11 N -0.736 5.736 12 C 0.534 3.466 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.074 0.926 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.271 1.271 22 H -0.280 1.280 23 H -0.280 1.280 24 N -0.260 5.260 25 N -0.279 5.279 26 C 0.083 3.917 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.162 0.838 33 H 0.410 0.590 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.401 0.599 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.268 0.732 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.647 -34.743 -1.150 36.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.111 4.111 4 C -0.203 4.203 5 C -0.176 4.176 6 C 0.392 3.608 7 O -0.405 6.405 8 N -0.367 5.367 9 C -0.015 4.015 10 C -0.014 4.014 11 N -0.392 5.392 12 C 0.320 3.680 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 N -0.096 5.096 25 N -0.067 5.067 26 C -0.057 4.057 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.245 0.755 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.235 0.765 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.114 0.886 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.172 -34.031 -3.534 36.314 hybrid contribution -0.082 0.428 2.729 2.764 sum -12.254 -33.602 -0.805 35.776 Atomic orbital electron populations 1.21778 0.93894 1.02336 1.02704 1.20127 0.96521 0.88628 1.04014 1.21413 1.05864 0.97042 0.86794 1.21495 1.06802 0.92232 0.99739 1.21787 1.09065 0.96780 0.89925 1.16814 0.76709 0.80977 0.86253 1.90811 1.53690 1.82864 1.13155 1.45621 1.66827 1.12674 1.11584 1.21494 1.01473 0.84296 0.94202 1.21316 1.01206 0.84806 0.94078 1.45803 1.69708 1.12956 1.10724 1.20322 0.75852 0.83354 0.88460 1.90708 1.51272 1.82689 1.14326 1.23531 1.04673 0.98124 1.04048 1.85396 1.84144 1.04510 1.09367 1.22916 1.51110 0.99585 0.94703 0.90820 1.24992 0.94806 0.97903 0.95866 1.70030 1.42723 1.23868 1.13708 0.86113 0.78104 0.80688 0.80573 1.19588 1.20571 1.20577 1.73526 1.18318 1.02890 1.14860 1.45321 1.45373 1.08097 1.07939 1.22206 1.04346 1.01777 0.77416 0.92759 0.91610 0.91786 0.90639 0.88976 0.82040 0.75474 0.90393 0.90386 0.90862 0.90859 0.76462 0.89046 0.89046 0.92243 0.89511 0.88623 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 9.89 37.16 0.37 -0.08 16 2 C -0.05 -0.18 6.00 -27.88 -0.17 -0.35 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.17 -1.61 10.73 -39.37 -0.42 -2.03 16 5 C -0.02 -0.17 7.13 -82.76 -0.59 -0.76 16 6 C 0.61 7.35 7.82 -12.39 -0.10 7.25 16 7 O -0.53 -7.87 16.93 5.31 0.09 -7.78 16 8 N -0.71 -7.21 5.55 -61.29 -0.34 -7.55 16 9 C 0.11 1.07 5.79 -4.04 -0.02 1.04 16 10 C 0.11 1.25 5.79 -4.04 -0.02 1.23 16 11 N -0.74 -9.65 5.56 -60.29 -0.33 -9.98 16 12 C 0.53 9.89 7.85 -10.98 -0.09 9.80 16 13 O -0.52 -11.65 15.86 5.56 0.09 -11.56 16 14 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 17 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 18 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 19 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 20 Si 0.92 21.50 29.55 -169.99 -5.02 16.47 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 N -0.26 -2.54 11.67 33.42 0.39 -2.15 16 25 N -0.28 -1.99 3.70 -63.85 -0.24 -2.23 16 26 C 0.08 0.22 10.89 59.85 0.65 0.87 16 27 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.12 7.43 -51.93 -0.39 -0.26 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.16 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.41 3.63 8.20 -40.82 -0.33 3.29 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.87 8.14 -51.92 -0.42 0.44 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.40 4.08 8.47 -40.82 -0.35 3.73 16 39 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 40 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 41 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.10 0.03 7.44 -51.93 -0.39 -0.35 16 44 H 0.10 0.23 8.14 -51.92 -0.42 -0.19 16 LS Contribution 396.56 15.07 5.98 5.98 Total: -1.00 -38.65 396.56 -7.84 -46.49 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -6.49 Total: 0.95 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -0.48 Total: 0.73 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.21 Total: -47.41 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.18 Total: -19.34 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.65 -7.84 -46.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740480538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.654 kcal (2) G-P(sol) polarization free energy of solvation -38.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds