Wall clock time and date at job start Sat Apr 11 2020 06:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30864 * 125.41599 * 2 1 4 4 C 1.33317 * 109.68195 * 179.97438 * 3 2 1 5 5 C 1.36663 * 107.78701 * 0.02562 * 4 3 2 6 6 C 1.46771 * 126.84585 * 179.97438 * 5 4 3 7 7 O 1.21683 * 119.99933 * 0.02562 * 6 5 4 8 8 N 1.34767 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00310 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47565 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.47156 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47733 * 54.99895 * 11 10 9 13 13 C 1.53008 * 109.47045 * 174.99811 * 11 10 9 14 14 N 1.46504 * 109.47212 * 294.99524 * 11 10 9 15 15 C 1.34775 * 119.99967 * 155.00282 * 14 11 10 16 16 O 1.21274 * 120.00251 * 0.02562 * 15 14 11 17 17 C 1.50699 * 119.99605 * 180.02562 * 15 14 11 18 18 S 1.81008 * 109.46955 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99985 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00015 * 0.02562 * 19 18 17 21 21 C 1.38790 * 119.99609 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00551 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99769 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47028 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47282 * 119.99996 * 23 21 19 26 26 H 1.48500 * 109.47213 * 240.00005 * 23 21 19 27 27 N 1.34490 * 125.42009 * 179.97438 * 2 1 3 28 28 H 0.97005 * 126.46844 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47030 * 90.02349 * 1 2 3 30 30 H 1.08995 * 109.47297 * 210.02555 * 1 2 3 31 31 H 1.09010 * 109.46957 * 330.02464 * 1 2 3 32 32 H 1.08003 * 126.10976 * 179.97438 * 4 3 2 33 33 H 0.96999 * 120.00275 * 0.02562 * 8 6 5 34 34 H 1.09007 * 109.47042 * 300.00287 * 9 8 6 35 35 H 1.08992 * 109.47297 * 59.99888 * 9 8 6 36 36 H 1.09007 * 109.46881 * 300.00025 * 10 9 8 37 37 H 1.09000 * 109.47052 * 59.99750 * 10 9 8 38 38 H 1.08998 * 109.46956 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.47144 * 299.99872 * 13 11 10 40 40 H 1.09000 * 109.46602 * 59.99800 * 13 11 10 41 41 H 0.97001 * 119.99421 * 335.00432 * 14 11 10 42 42 H 1.09003 * 109.47352 * 299.99453 * 17 15 14 43 43 H 1.08999 * 109.47696 * 60.00068 * 17 15 14 44 44 H 0.97010 * 120.00269 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 0.0006 5 6 3.5975 -0.6608 0.0004 6 6 4.8029 -1.4983 0.0003 7 8 5.9038 -0.9800 0.0009 8 7 4.6903 -2.8412 -0.0005 9 6 5.8934 -3.6772 -0.0011 10 6 5.4892 -5.1528 -0.0025 11 6 6.7456 -6.0258 -0.0026 12 1 7.3799 -5.7498 0.8397 13 6 6.3444 -7.4971 0.1218 14 7 7.4804 -5.8241 -1.2539 15 6 8.8072 -6.0561 -1.3012 16 8 9.3928 -6.4322 -0.3080 17 6 9.5630 -5.8481 -2.5882 18 16 11.3115 -6.2392 -2.3311 19 6 11.9374 -5.9194 -3.9468 20 1 11.2704 -5.5859 -4.7281 21 6 13.2875 -6.0962 -4.2155 22 7 14.1003 -6.5032 -3.2635 23 14 13.9513 -5.7565 -5.9283 24 1 12.8416 -5.3142 -6.8105 25 1 14.9827 -4.6905 -5.8571 26 1 14.5571 -6.9954 -6.4791 27 7 2.2865 -1.0960 0.0005 28 1 1.9849 -2.0180 0.0006 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5135 32 1 4.3978 1.3722 0.0003 33 1 3.8127 -3.2544 -0.0013 34 1 6.4849 -3.4620 -0.8911 35 1 6.4851 -3.4631 0.8888 36 1 4.8975 -5.3683 0.8873 37 1 4.8977 -5.3667 -0.8928 38 1 7.2396 -8.1190 0.1213 39 1 5.7978 -7.6472 1.0528 40 1 5.7101 -7.7731 -0.7206 41 1 7.0118 -5.5236 -2.0483 42 1 9.1539 -6.5008 -3.3594 43 1 9.4660 -4.8090 -2.9028 44 1 15.0439 -6.6271 -3.4515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744894681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:24 Heat of formation + Delta-G solvation = -30.892945 kcal Electronic energy + Delta-G solvation = -25640.475626 eV Core-core repulsion = 21719.553182 eV Total energy + Delta-G solvation = -3920.922444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.71360 -39.88709 -39.32764 -36.71576 -34.88574 -33.24689 -32.47871 -32.42021 -31.80801 -29.65099 -28.52531 -27.77828 -25.48002 -24.44494 -22.76774 -21.71111 -21.37675 -20.74889 -20.37858 -19.12234 -17.83047 -16.69227 -16.52204 -16.47205 -16.24651 -15.92378 -15.39214 -14.97339 -14.79621 -14.52459 -14.40673 -14.31003 -13.85015 -13.82097 -13.67056 -13.26848 -13.19862 -13.04791 -12.96616 -12.66102 -12.21561 -11.98578 -11.87346 -11.62286 -11.17355 -11.06039 -11.01013 -10.89087 -10.74640 -10.69455 -10.39021 -9.79826 -9.61672 -9.40840 -9.07305 -8.98148 -8.93796 -8.22664 -6.48983 -6.20958 -3.91326 0.81114 2.26940 2.33226 2.62571 2.94323 3.01553 3.07655 3.22477 3.28844 3.33363 3.69293 3.80485 4.21130 4.23635 4.31932 4.45083 4.59624 4.63530 4.77360 4.86703 5.01366 5.12254 5.13292 5.14500 5.24023 5.26184 5.26917 5.31010 5.47501 5.54202 5.62292 5.66177 5.87791 5.88774 5.94513 6.08160 6.10865 6.14723 6.60665 6.61770 6.92219 7.42407 7.60747 7.66453 7.70857 8.36296 8.59247 9.24665 10.86512 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.001883 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.438855 B =14866.294680 C =16197.753814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.239 3.761 3 N -0.495 5.495 4 C 0.075 3.925 5 C -0.092 4.092 6 C 0.593 3.407 7 O -0.515 6.515 8 N -0.731 5.731 9 C 0.117 3.883 10 C -0.137 4.137 11 C 0.147 3.853 12 H 0.092 0.908 13 C -0.163 4.163 14 N -0.736 5.736 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.553 5.553 28 H 0.420 0.580 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.186 0.814 33 H 0.392 0.608 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.231 6.373 6.928 33.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.025 4.025 3 N -0.215 5.215 4 C -0.078 4.078 5 C -0.207 4.207 6 C 0.379 3.621 7 O -0.390 6.390 8 N -0.382 5.382 9 C -0.006 4.006 10 C -0.176 4.176 11 C 0.041 3.959 12 H 0.110 0.890 13 C -0.221 4.221 14 N -0.391 5.391 15 C 0.320 3.680 16 O -0.389 6.389 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 N -0.159 5.159 28 H 0.258 0.742 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.203 0.797 33 H 0.225 0.775 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -30.471 6.879 8.655 32.415 hybrid contribution -0.735 -0.772 -2.675 2.879 sum -31.207 6.108 5.981 32.356 Atomic orbital electron populations 1.20332 0.84098 1.04683 1.04217 1.23525 0.95961 0.81518 1.01455 1.70244 1.02165 1.28167 1.20937 1.22738 0.94805 0.91306 0.98973 1.21171 0.83558 0.96113 1.19905 1.16844 0.87073 0.81435 0.76777 1.90925 1.25768 1.73043 1.49216 1.45885 1.09997 1.05848 1.76492 1.21492 0.86551 0.88710 1.03868 1.22111 0.98411 0.93447 1.03586 1.20765 0.91821 0.94558 0.88737 0.88961 1.22174 1.02325 0.96059 1.01555 1.46132 1.08647 1.71428 1.12943 1.20302 0.81268 0.76082 0.90307 1.90700 1.67793 1.44098 1.36344 1.23541 1.04741 1.05002 0.97224 1.85390 0.93138 1.87997 1.16818 1.22908 0.96412 1.52647 0.96357 0.90889 1.24987 0.95795 0.94623 0.98177 1.70026 1.04615 1.43336 1.32296 0.86121 0.78857 0.78099 0.82439 1.19629 1.20536 1.20584 1.43228 1.06080 1.10148 1.56484 0.74161 0.89440 0.90351 0.88507 0.79695 0.77453 0.90425 0.90605 0.89781 0.90653 0.91337 0.91891 0.92560 0.76940 0.89285 0.89207 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.51 36.01 0.38 0.21 16 2 C 0.24 1.52 8.12 -155.61 -1.26 0.26 16 3 N -0.49 -4.85 11.20 -10.58 -0.12 -4.97 16 4 C 0.08 0.76 11.66 -17.48 -0.20 0.56 16 5 C -0.09 -0.81 7.08 -82.14 -0.58 -1.39 16 6 C 0.59 6.12 7.79 -12.82 -0.10 6.02 16 7 O -0.52 -7.65 16.90 5.20 0.09 -7.56 16 8 N -0.73 -5.07 5.55 -61.59 -0.34 -5.41 16 9 C 0.12 0.98 5.56 -4.04 -0.02 0.96 16 10 C -0.14 -0.82 4.87 -26.73 -0.13 -0.95 16 11 C 0.15 1.45 2.57 -67.93 -0.17 1.28 16 12 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 13 C -0.16 -1.51 9.48 37.16 0.35 -1.16 16 14 N -0.74 -8.93 4.53 -53.81 -0.24 -9.17 16 15 C 0.53 9.61 7.81 -10.99 -0.09 9.53 16 16 O -0.52 -11.36 15.52 5.56 0.09 -11.27 16 17 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 18 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 19 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 20 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 21 C 0.07 2.11 5.49 -17.44 -0.10 2.01 16 22 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 23 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 N -0.55 -2.85 6.07 -7.02 -0.04 -2.89 16 28 H 0.42 0.55 8.32 -40.82 -0.34 0.21 16 29 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 30 H 0.08 0.00 8.14 -51.93 -0.42 -0.43 16 31 H 0.10 0.23 8.14 -51.92 -0.42 -0.19 16 32 H 0.19 1.75 8.06 -52.48 -0.42 1.33 16 33 H 0.39 1.30 7.72 -40.82 -0.31 0.98 16 34 H 0.08 0.80 7.75 -51.93 -0.40 0.40 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.40 3.74 8.60 -40.82 -0.35 3.39 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 43 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 394.75 15.07 5.95 5.95 Total: -1.00 -39.71 394.75 -8.95 -48.67 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.42 Total: 0.10 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.41 Total: -0.60 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.01 Total: -48.03 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.17 Total: -18.83 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -39.71 -8.95 -48.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744894681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.776 kcal (2) G-P(sol) polarization free energy of solvation -39.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds