Wall clock time and date at job start Sat Apr 11 2020 06:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30864 * 125.41599 * 2 1 4 4 C 1.33317 * 109.68195 * 179.97438 * 3 2 1 5 5 C 1.36663 * 107.78701 * 0.02562 * 4 3 2 6 6 C 1.46771 * 126.84585 * 179.97438 * 5 4 3 7 7 O 1.21683 * 119.99933 * 0.02562 * 6 5 4 8 8 N 1.34767 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00310 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.47565 * 180.02562 * 9 8 6 11 11 C 1.52993 * 109.47156 * 180.02562 * 10 9 8 12 12 H 1.08992 * 109.47733 * 54.99895 * 11 10 9 13 13 C 1.53008 * 109.47045 * 174.99811 * 11 10 9 14 14 N 1.46504 * 109.47212 * 294.99524 * 11 10 9 15 15 C 1.34775 * 119.99967 * 155.00282 * 14 11 10 16 16 O 1.21274 * 120.00251 * 0.02562 * 15 14 11 17 17 C 1.50699 * 119.99605 * 180.02562 * 15 14 11 18 18 S 1.81008 * 109.46955 * 179.97438 * 17 15 14 19 19 C 1.76204 * 99.99985 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00015 * 0.02562 * 19 18 17 21 21 C 1.38790 * 119.99609 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00551 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99769 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47028 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47282 * 119.99996 * 23 21 19 26 26 H 1.48500 * 109.47213 * 240.00005 * 23 21 19 27 27 N 1.34490 * 125.42009 * 179.97438 * 2 1 3 28 28 H 0.97005 * 126.46844 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47030 * 90.02349 * 1 2 3 30 30 H 1.08995 * 109.47297 * 210.02555 * 1 2 3 31 31 H 1.09010 * 109.46957 * 330.02464 * 1 2 3 32 32 H 1.08003 * 126.10976 * 179.97438 * 4 3 2 33 33 H 0.96999 * 120.00275 * 0.02562 * 8 6 5 34 34 H 1.09007 * 109.47042 * 300.00287 * 9 8 6 35 35 H 1.08992 * 109.47297 * 59.99888 * 9 8 6 36 36 H 1.09007 * 109.46881 * 300.00025 * 10 9 8 37 37 H 1.09000 * 109.47052 * 59.99750 * 10 9 8 38 38 H 1.08998 * 109.46956 * 179.97438 * 13 11 10 39 39 H 1.08999 * 109.47144 * 299.99872 * 13 11 10 40 40 H 1.09000 * 109.46602 * 59.99800 * 13 11 10 41 41 H 0.97001 * 119.99421 * 335.00432 * 14 11 10 42 42 H 1.09003 * 109.47352 * 299.99453 * 17 15 14 43 43 H 1.08999 * 109.47696 * 60.00068 * 17 15 14 44 44 H 0.97010 * 120.00269 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5486 0.7050 0.0006 5 6 3.5975 -0.6608 0.0004 6 6 4.8029 -1.4983 0.0003 7 8 5.9038 -0.9800 0.0009 8 7 4.6903 -2.8412 -0.0005 9 6 5.8934 -3.6772 -0.0011 10 6 5.4892 -5.1528 -0.0025 11 6 6.7456 -6.0258 -0.0026 12 1 7.3799 -5.7498 0.8397 13 6 6.3444 -7.4971 0.1218 14 7 7.4804 -5.8241 -1.2539 15 6 8.8072 -6.0561 -1.3012 16 8 9.3928 -6.4322 -0.3080 17 6 9.5630 -5.8481 -2.5882 18 16 11.3115 -6.2392 -2.3311 19 6 11.9374 -5.9194 -3.9468 20 1 11.2704 -5.5859 -4.7281 21 6 13.2875 -6.0962 -4.2155 22 7 14.1003 -6.5032 -3.2635 23 14 13.9513 -5.7565 -5.9283 24 1 12.8416 -5.3142 -6.8105 25 1 14.9827 -4.6905 -5.8571 26 1 14.5571 -6.9954 -6.4791 27 7 2.2865 -1.0960 0.0005 28 1 1.9849 -2.0180 0.0006 29 1 -0.3633 -0.0004 -1.0277 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5135 32 1 4.3978 1.3722 0.0003 33 1 3.8127 -3.2544 -0.0013 34 1 6.4849 -3.4620 -0.8911 35 1 6.4851 -3.4631 0.8888 36 1 4.8975 -5.3683 0.8873 37 1 4.8977 -5.3667 -0.8928 38 1 7.2396 -8.1190 0.1213 39 1 5.7978 -7.6472 1.0528 40 1 5.7101 -7.7731 -0.7206 41 1 7.0118 -5.5236 -2.0483 42 1 9.1539 -6.5008 -3.3594 43 1 9.4660 -4.8090 -2.9028 44 1 15.0439 -6.6271 -3.4515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744894681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:00:23 Heat of formation + Delta-G solvation = -62.722528 kcal Electronic energy + Delta-G solvation = -25641.855861 eV Core-core repulsion = 21719.553182 eV Total energy + Delta-G solvation = -3922.302679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.29567 -40.91148 -40.41396 -37.71551 -35.80960 -34.60018 -33.88156 -33.12149 -32.73610 -30.56431 -29.76206 -28.26793 -27.67377 -25.16192 -23.46788 -22.61815 -21.97613 -21.64347 -21.36891 -19.92833 -19.65216 -17.95493 -17.48171 -17.11975 -16.99868 -16.90049 -16.85329 -16.38287 -16.20302 -15.81031 -15.30729 -15.03115 -14.88750 -14.78576 -14.48971 -14.41284 -14.28310 -13.98782 -13.43873 -13.33163 -13.22013 -13.17496 -13.04428 -12.92560 -12.60754 -12.49092 -12.44812 -11.95638 -11.72053 -11.63736 -11.27149 -11.17229 -11.14389 -10.91385 -10.39056 -10.28569 -10.10705 -9.56843 -8.67608 -8.36177 -6.14031 0.15687 1.26377 1.39965 1.46228 1.57398 1.63093 1.71325 1.72146 2.02120 2.19700 2.24988 2.31268 2.98012 3.31216 3.37522 3.68169 3.71291 3.86946 4.00111 4.05226 4.08322 4.26226 4.28188 4.41732 4.46033 4.49758 4.55926 4.62491 4.77122 4.81294 4.82709 4.86635 4.98932 5.11144 5.13924 5.21421 5.33840 5.40592 5.43029 5.55817 6.18564 6.22766 6.36315 6.51935 6.85202 6.99980 7.05290 7.27282 8.73308 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014554 B = 0.001883 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.438855 B =14866.294680 C =16197.753814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.251 3.749 3 N -0.534 5.534 4 C 0.052 3.948 5 C -0.097 4.097 6 C 0.592 3.408 7 O -0.571 6.571 8 N -0.707 5.707 9 C 0.117 3.883 10 C -0.117 4.117 11 C 0.141 3.859 12 H 0.064 0.936 13 C -0.157 4.157 14 N -0.710 5.710 15 C 0.535 3.465 16 O -0.564 6.564 17 C -0.132 4.132 18 S -0.152 6.152 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.013 3.987 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.257 1.257 25 H -0.275 1.275 26 H -0.272 1.272 27 N -0.533 5.533 28 H 0.441 0.559 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.175 0.825 33 H 0.415 0.585 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.029 0.971 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.414 0.586 42 H 0.110 0.890 43 H 0.104 0.896 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.457 5.715 5.490 37.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.014 4.014 3 N -0.255 5.255 4 C -0.102 4.102 5 C -0.214 4.214 6 C 0.379 3.621 7 O -0.450 6.450 8 N -0.359 5.359 9 C -0.007 4.007 10 C -0.155 4.155 11 C 0.036 3.964 12 H 0.082 0.918 13 C -0.215 4.215 14 N -0.365 5.365 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.283 4.283 18 S 0.075 5.925 19 C -0.694 4.694 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.197 1.197 27 N -0.141 5.141 28 H 0.283 0.717 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.114 0.886 32 H 0.192 0.808 33 H 0.252 0.748 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.048 0.952 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.252 0.748 42 H 0.128 0.872 43 H 0.122 0.878 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -34.819 6.170 7.205 36.088 hybrid contribution 0.384 -0.546 -2.157 2.258 sum -34.435 5.624 5.048 35.254 Atomic orbital electron populations 1.20569 0.80833 1.06193 1.05595 1.24312 0.97453 0.80884 0.98719 1.70225 1.02212 1.30209 1.22822 1.22785 0.95192 0.92206 1.00059 1.20796 0.84465 0.95406 1.20717 1.17054 0.86684 0.82345 0.75990 1.90898 1.27897 1.74215 1.51990 1.45602 1.10815 1.04606 1.74840 1.21395 0.86792 0.90598 1.01894 1.22006 0.96598 0.90140 1.06747 1.20987 0.92718 0.96298 0.86354 0.91757 1.22120 1.01198 0.94239 1.03957 1.45906 1.06617 1.69148 1.14781 1.19990 0.83008 0.76139 0.88792 1.90688 1.69243 1.46773 1.37526 1.23393 0.99567 1.06141 0.99188 1.85556 1.00020 1.88742 1.18154 1.23239 0.97120 1.52659 0.96420 0.90009 1.26126 0.96053 0.94047 1.02939 1.70188 1.05068 1.44531 1.34954 0.84909 0.78315 0.78147 0.76592 1.18080 1.20013 1.19734 1.43060 1.04365 1.11189 1.55450 0.71666 0.87955 0.87203 0.88639 0.80786 0.74792 0.92439 0.92956 0.86586 0.87410 0.95190 0.89269 0.90399 0.74844 0.87159 0.87761 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.07 10.51 71.24 0.75 0.68 16 2 C 0.25 2.63 8.12 138.20 1.12 3.76 16 3 N -0.53 -10.26 11.20 -187.39 -2.10 -12.36 16 4 C 0.05 1.08 11.66 84.10 0.98 2.06 16 5 C -0.10 -1.63 7.08 40.01 0.28 -1.35 16 6 C 0.59 11.99 7.79 86.48 0.67 12.66 16 7 O -0.57 -17.79 16.90 -4.29 -0.07 -17.86 16 8 N -0.71 -8.19 5.55 -467.00 -2.59 -10.79 16 9 C 0.12 1.78 5.56 86.38 0.48 2.26 16 10 C -0.12 -0.94 4.87 30.59 0.15 -0.79 16 11 C 0.14 2.53 2.57 44.99 0.12 2.64 16 12 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 13 C -0.16 -2.52 9.48 71.98 0.68 -1.84 16 14 N -0.71 -16.16 4.53 -442.54 -2.00 -18.16 16 15 C 0.54 19.38 7.81 87.66 0.68 20.06 16 16 O -0.56 -25.91 15.52 -3.01 -0.05 -25.96 16 17 C -0.13 -5.26 6.16 71.24 0.44 -4.82 16 18 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 19 C -0.55 -31.75 9.50 67.95 0.65 -31.10 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.76 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.73 13.22 21.65 0.29 -56.44 16 23 Si 1.00 44.35 29.55 68.60 2.03 46.38 16 24 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 N -0.53 -4.05 6.07 -176.11 -1.07 -5.12 16 28 H 0.44 -0.70 8.32 -92.70 -0.77 -1.47 16 29 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.11 -0.55 8.14 -2.39 -0.02 -0.57 16 31 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.17 3.74 8.06 -2.91 -0.02 3.72 16 33 H 0.41 1.01 7.72 -92.71 -0.72 0.29 16 34 H 0.06 1.13 7.75 -2.38 -0.02 1.11 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 37 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.41 6.61 8.60 -92.71 -0.80 5.81 16 42 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 43 H 0.10 3.85 8.14 -2.40 -0.02 3.84 16 44 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 Total: -1.00 -94.50 394.75 -0.49 -94.99 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -1.23 Total: 9.61 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 7.47 Total: 5.43 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -7.48 Total: -102.86 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.12 Total: -43.82 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -94.50 -0.49 -94.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744894681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.269 kcal (2) G-P(sol) polarization free energy of solvation -94.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds