Wall clock time and date at job start Sat Apr 11 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46677 * 2 1 4 4 N 1.46499 * 109.47618 * 119.99767 * 2 1 3 5 5 C 1.46505 * 119.99901 * 300.00811 * 4 2 1 6 6 C 1.50710 * 109.46739 * 269.99284 * 5 4 2 7 7 H 1.07999 * 119.99431 * 359.97438 * 6 5 4 8 8 C 1.37869 * 119.99968 * 180.02562 * 6 5 4 9 9 N 1.31522 * 120.00036 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00090 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46919 * 89.99980 * 10 8 6 12 12 H 1.48501 * 109.47048 * 209.99909 * 10 8 6 13 13 H 1.48502 * 109.46937 * 329.99965 * 10 8 6 14 14 C 1.34768 * 120.00068 * 119.99739 * 4 2 1 15 15 O 1.21284 * 120.00184 * 180.02562 * 14 4 2 16 16 C 1.50699 * 119.99948 * 0.02562 * 14 4 2 17 17 N 1.46500 * 109.47338 * 179.97438 * 16 14 4 18 18 C 1.34778 * 120.00282 * 179.97438 * 17 16 14 19 19 O 1.21569 * 119.99855 * 0.02562 * 18 17 16 20 20 C 1.47727 * 120.00078 * 180.02562 * 18 17 16 21 21 C 1.39647 * 120.11032 * 359.97438 * 20 18 17 22 22 C 1.37851 * 119.92663 * 179.97438 * 21 20 18 23 23 C 1.38611 * 120.14691 * 0.03045 * 22 21 20 24 24 F 1.35101 * 119.88748 * 180.27877 * 23 22 21 25 25 C 1.38835 * 120.21757 * 359.97438 * 23 22 21 26 26 F 1.35098 * 119.96034 * 180.02562 * 25 23 22 27 27 C 1.38050 * 120.07440 * 359.97438 * 25 23 22 28 28 H 1.09004 * 109.46957 * 300.00151 * 1 2 3 29 29 H 1.08997 * 109.47217 * 60.00005 * 1 2 3 30 30 H 1.08997 * 109.46752 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47284 * 240.00374 * 2 1 3 32 32 H 1.09010 * 109.46913 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47293 * 299.99949 * 3 2 1 34 34 H 1.08996 * 109.47411 * 60.00457 * 3 2 1 35 35 H 1.09000 * 109.47214 * 29.98939 * 5 4 2 36 36 H 1.08998 * 109.47044 * 150.00014 * 5 4 2 37 37 H 0.96993 * 119.99845 * 180.02562 * 9 8 6 38 38 H 1.09000 * 109.47653 * 59.99708 * 16 14 4 39 39 H 1.09004 * 109.46896 * 299.99437 * 16 14 4 40 40 H 0.97005 * 119.99990 * 0.02562 * 17 16 14 41 41 H 1.08008 * 120.03895 * 0.02562 * 21 20 18 42 42 H 1.08001 * 119.92725 * 180.02562 * 22 21 20 43 43 H 1.08002 * 120.07427 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0185 -0.6905 1.1962 5 6 1.6644 -0.1900 2.5268 6 6 2.7032 0.8020 2.9830 7 1 3.5432 1.0358 2.3457 8 6 2.5817 1.4101 4.2144 9 7 1.5590 1.1250 4.9906 10 14 3.8689 2.6402 4.7796 11 1 3.4749 4.0042 4.3442 12 1 3.9717 2.6038 6.2606 13 1 5.1832 2.2906 4.1834 14 6 2.7933 -1.7863 1.0725 15 8 3.1973 -2.3582 2.0628 16 6 3.1577 -2.3009 -0.2962 17 7 4.0003 -3.4917 -0.1619 18 6 4.4495 -4.1271 -1.2623 19 8 4.1558 -3.7118 -2.3665 20 6 5.2988 -5.3282 -1.1268 21 6 5.6381 -5.8070 0.1404 22 6 6.4303 -6.9285 0.2625 23 6 6.8915 -7.5816 -0.8698 24 9 7.6630 -8.6835 -0.7441 25 6 6.5580 -7.1108 -2.1326 26 9 7.0100 -7.7516 -3.2326 27 6 5.7643 -5.9891 -2.2654 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.6905 0.2974 2.4844 36 1 1.6240 -1.0226 3.2292 37 1 1.4734 1.5531 5.8567 38 1 3.7028 -1.5301 -0.8410 39 1 2.2494 -2.5577 -0.8415 40 1 4.2344 -3.8234 0.7192 41 1 5.2794 -5.2997 1.0239 42 1 6.6924 -7.2990 1.2425 43 1 5.5045 -5.6231 -3.2477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547425507.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:14 Heat of formation + Delta-G solvation = -133.892253 kcal Electronic energy + Delta-G solvation = -28876.121726 eV Core-core repulsion = 24364.599759 eV Total energy + Delta-G solvation = -4511.521967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.88163 -48.94951 -40.56252 -39.40042 -38.24466 -36.25811 -34.58826 -32.90875 -31.54047 -31.23886 -30.98010 -28.76278 -26.87627 -26.50969 -24.22848 -23.56198 -22.75747 -21.44918 -20.84526 -19.27415 -18.24923 -17.96693 -17.49443 -16.78109 -16.73410 -16.58066 -16.38611 -15.73827 -15.68383 -15.34942 -15.14105 -14.88562 -14.52294 -14.50185 -14.44818 -13.77181 -13.56120 -13.42807 -13.15140 -13.10275 -12.96344 -12.49943 -12.37920 -12.05437 -11.78783 -11.75568 -11.64310 -11.28729 -11.02257 -10.93220 -10.65750 -10.46923 -10.30758 -10.11515 -9.64838 -9.61564 -9.36687 -9.20101 -9.13966 -8.49512 -7.83870 -6.11266 -4.15018 0.07712 0.51970 2.30376 2.75152 3.11190 3.24289 3.25032 3.29286 3.32557 3.36326 3.74909 3.89311 4.07541 4.29247 4.38192 4.42466 4.59922 4.75922 5.13079 5.18011 5.23608 5.29109 5.34605 5.36959 5.43005 5.49637 5.51011 5.57336 5.62976 5.94075 6.04094 6.11761 6.19180 6.24040 6.30186 6.51931 6.88321 6.96248 7.29279 7.34558 7.41593 7.84421 7.93461 8.15205 8.23961 8.71835 8.91054 9.49371 10.96971 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015554 B = 0.002406 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.730541 B =11636.621499 C =12751.733264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.129 3.871 3 C -0.157 4.157 4 N -0.583 5.583 5 C 0.245 3.755 6 C -0.521 4.521 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.500 3.500 15 O -0.542 6.542 16 C 0.097 3.903 17 N -0.704 5.704 18 C 0.561 3.439 19 O -0.535 6.535 20 C -0.112 4.112 21 C -0.063 4.063 22 C -0.130 4.130 23 C 0.091 3.909 24 F -0.124 7.124 25 C 0.060 3.940 26 F -0.125 7.125 27 C -0.067 4.067 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.412 0.588 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.984 -12.464 -12.943 18.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 C -0.215 4.215 4 N -0.315 5.315 5 C 0.127 3.873 6 C -0.560 4.560 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.199 1.199 14 C 0.285 3.715 15 O -0.420 6.420 16 C -0.030 4.030 17 N -0.359 5.359 18 C 0.347 3.653 19 O -0.413 6.413 20 C -0.115 4.115 21 C -0.082 4.082 22 C -0.148 4.148 23 C 0.071 3.929 24 F -0.102 7.102 25 C 0.040 3.960 26 F -0.103 7.103 27 C -0.086 4.086 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.252 0.748 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 4.909 -12.440 -13.019 18.663 hybrid contribution 1.022 0.324 0.651 1.255 sum 5.931 -12.115 -12.368 18.301 Atomic orbital electron populations 1.22156 0.95210 1.01948 1.02696 1.21099 0.94477 0.94452 0.87547 1.22140 1.01432 0.95416 1.02547 1.48313 1.48216 1.25715 1.09232 1.19315 0.96144 0.95115 0.76756 1.21402 1.08934 1.23541 1.02137 0.92309 1.24920 0.95768 0.97082 0.96317 1.69925 1.29492 1.43187 1.10747 0.86537 0.81946 0.81259 0.77929 1.20650 1.21151 1.19925 1.20112 0.79856 0.81670 0.89837 1.90657 1.53913 1.58354 1.39099 1.21267 0.96271 0.88315 0.97119 1.45636 1.51456 1.28894 1.09899 1.17902 0.79988 0.82964 0.84423 1.90801 1.58318 1.66686 1.25532 1.19800 1.01109 0.97317 0.93302 1.21417 0.94871 0.94589 0.97357 1.21074 0.99246 0.96382 0.98143 1.17960 0.95321 0.86541 0.93128 1.91559 1.72201 1.49857 1.96621 1.17474 1.01450 0.95254 0.81866 1.91559 1.87339 1.80518 1.50908 1.21152 0.94317 0.92151 1.01026 0.91177 0.92007 0.92818 0.90537 0.92653 0.92997 0.89932 0.94464 0.93895 0.92709 0.88507 0.88627 0.74810 0.83171 0.82677 0.82161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.17 37.16 0.34 -1.84 16 2 C 0.13 1.92 3.17 -67.93 -0.22 1.71 16 3 C -0.16 -2.41 8.47 37.16 0.31 -2.10 16 4 N -0.58 -11.11 2.39 -167.46 -0.40 -11.51 16 5 C 0.25 5.88 4.60 -5.19 -0.02 5.85 16 6 C -0.52 -13.65 7.83 -34.44 -0.27 -13.92 16 7 H 0.06 1.54 7.63 -52.49 -0.40 1.14 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -25.35 13.29 55.43 0.74 -24.62 16 10 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 14 C 0.50 9.19 7.74 -10.99 -0.09 9.10 16 15 O -0.54 -11.77 15.25 5.55 0.08 -11.68 16 16 C 0.10 1.36 4.46 -5.19 -0.02 1.34 16 17 N -0.70 -9.07 5.48 -62.47 -0.34 -9.41 16 18 C 0.56 7.08 7.77 -12.38 -0.10 6.98 16 19 O -0.54 -8.13 16.34 5.30 0.09 -8.04 16 20 C -0.11 -1.13 5.87 -104.97 -0.62 -1.75 16 21 C -0.06 -0.52 9.53 -39.20 -0.37 -0.90 16 22 C -0.13 -0.98 10.01 -39.59 -0.40 -1.37 16 23 C 0.09 0.84 7.31 -39.22 -0.29 0.55 16 24 F -0.12 -1.23 17.17 2.25 0.04 -1.20 16 25 C 0.06 0.59 7.30 -39.43 -0.29 0.30 16 26 F -0.12 -1.33 17.18 2.25 0.04 -1.29 16 27 C -0.07 -0.65 9.57 -39.13 -0.37 -1.03 16 28 H 0.07 1.08 6.66 -51.93 -0.35 0.74 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.95 5.77 -51.93 -0.30 0.65 16 32 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.50 6.92 -51.93 -0.36 1.14 16 35 H 0.04 0.91 6.43 -51.93 -0.33 0.57 16 36 H 0.04 1.18 7.42 -51.93 -0.39 0.79 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.10 1.30 7.79 -51.93 -0.40 0.89 16 39 H 0.10 1.21 7.79 -51.93 -0.40 0.80 16 40 H 0.41 5.08 5.46 -40.82 -0.22 4.86 16 41 H 0.15 1.05 6.40 -52.48 -0.34 0.71 16 42 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.16 1.51 7.65 -52.49 -0.40 1.11 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -31.49 371.06 -6.82 -38.30 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.14 Total: 3.45 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -2.49 Total: 4.48 kcal Atomic # 7 Polarization: -45.53 SS G_CDS: -0.01 Total: -45.54 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.17 Total: -19.73 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.08 Total: -2.49 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.49 -6.82 -38.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547425507.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.588 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds