Wall clock time and date at job start Sat Apr 11 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 108.75402 * 2 1 4 4 C 1.54973 * 108.70007 * 241.70419 * 2 1 3 5 5 C 1.54280 * 112.49904 * 197.93363 * 4 2 1 6 6 N 1.43382 * 113.13138 * 319.03429 * 5 4 2 7 7 C 1.34781 * 121.07558 * 281.97060 * 6 5 4 8 8 O 1.21591 * 119.99452 * 0.07732 * 7 6 5 9 9 N 1.34772 * 120.00503 * 180.02562 * 7 6 5 10 10 C 1.40190 * 120.00338 * 180.02562 * 9 7 6 11 11 C 1.40404 * 125.97129 * 359.97438 * 10 9 7 12 12 C 1.35250 * 107.86628 * 180.02562 * 11 10 9 13 13 N 1.34959 * 107.85807 * 0.02562 * 12 11 10 14 14 C 1.46504 * 125.97324 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46816 * 124.99872 * 14 13 12 16 16 H 1.07997 * 120.00626 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99967 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00537 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99804 * 0.02562 * 17 15 14 20 20 H 1.48490 * 109.47258 * 90.00259 * 19 17 15 21 21 H 1.48501 * 109.46945 * 210.00214 * 19 17 15 22 22 H 1.48508 * 109.47160 * 329.99851 * 19 17 15 23 23 N 1.31213 * 125.97169 * 179.69937 * 10 9 7 24 24 C 1.49078 * 117.89361 * 102.04401 * 6 5 4 25 25 C 1.44463 * 111.31183 * 275.86207 * 24 6 5 26 26 S 1.79010 * 108.79158 * 118.35463 * 2 1 3 27 27 O 1.42093 * 109.47433 * 325.37070 * 26 2 1 28 28 H 1.09001 * 109.47341 * 301.63904 * 1 2 3 29 29 H 1.08991 * 109.47186 * 61.64620 * 1 2 3 30 30 H 1.09004 * 109.46963 * 181.64100 * 1 2 3 31 31 H 1.09001 * 108.87346 * 318.70824 * 4 2 1 32 32 H 1.08995 * 108.87468 * 77.25549 * 4 2 1 33 33 H 1.09001 * 108.74310 * 79.99412 * 5 4 2 34 34 H 1.09003 * 108.73943 * 198.20035 * 5 4 2 35 35 H 0.97004 * 119.99897 * 0.02562 * 9 7 6 36 36 H 1.08000 * 126.06772 * 0.02562 * 11 10 9 37 37 H 1.07999 * 126.06525 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.47142 * 244.99374 * 14 13 12 39 39 H 1.08999 * 109.47361 * 5.00124 * 14 13 12 40 40 H 0.96993 * 120.00735 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.10390 * 155.40505 * 24 6 5 42 42 H 1.09003 * 109.09890 * 36.31343 * 24 6 5 43 43 H 1.09007 * 109.04580 * 180.73538 * 25 24 6 44 44 H 1.09000 * 109.04982 * 299.70309 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8805 1.0321 0.0000 4 6 2.0269 -0.6958 -1.2925 5 6 3.5007 -1.1413 -1.1940 6 7 4.3393 -0.1744 -0.5477 7 6 4.7700 0.9218 -1.2029 8 8 4.4468 1.1040 -2.3608 9 7 5.5581 1.8165 -0.5745 10 6 6.0056 2.9569 -1.2559 11 6 5.7115 3.2903 -2.5877 12 6 6.3285 4.4607 -2.8684 13 7 6.9894 4.8564 -1.7603 14 6 7.7924 6.0743 -1.6260 15 6 7.2935 6.8781 -0.4530 16 1 6.4613 6.5181 0.1336 17 6 7.8989 8.0738 -0.1291 18 7 7.4639 8.7751 0.8948 19 14 9.3371 8.6977 -1.1449 20 1 8.8291 9.5414 -2.2563 21 1 10.2386 9.5042 -0.2835 22 1 10.0870 7.5435 -1.7024 23 7 6.7684 3.9019 -0.7590 24 6 4.7215 -0.4208 0.8721 25 6 3.6981 0.0443 1.7795 26 16 2.1067 -0.8049 1.4914 27 8 1.2157 -0.5165 2.5601 28 1 -0.3634 0.5391 0.8749 29 1 -0.3633 0.4880 -0.9043 30 1 -0.3633 -1.0273 0.0294 31 1 1.4059 -1.5712 -1.4827 32 1 1.9244 -0.0030 -2.1277 33 1 3.5475 -2.0758 -0.6349 34 1 3.8816 -1.3165 -2.2002 35 1 5.8156 1.6712 0.3494 36 1 5.1010 2.7144 -3.2674 37 1 6.2984 4.9850 -3.8122 38 1 8.8363 5.8053 -1.4644 39 1 7.7069 6.6681 -2.5360 40 1 7.8900 9.6161 1.1229 41 1 5.6532 0.1026 1.0867 42 1 4.8709 -1.4902 1.0208 43 1 4.0202 -0.1415 2.8042 44 1 3.5588 1.1162 1.6394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590608289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:16 Heat of formation + Delta-G solvation = 38.824174 kcal Electronic energy + Delta-G solvation = -27659.958180 eV Core-core repulsion = 23742.058897 eV Total energy + Delta-G solvation = -3917.899283 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.01683 -40.03067 -37.17009 -35.98413 -35.29007 -34.53261 -33.25297 -31.96189 -31.30752 -29.49621 -29.03716 -27.09683 -24.63668 -23.73414 -22.96194 -22.24722 -21.11936 -20.09529 -19.28446 -18.12585 -17.68432 -17.14529 -16.85701 -16.42234 -16.06690 -15.84277 -15.28699 -15.23524 -14.71151 -14.57667 -14.42703 -14.09320 -13.79831 -13.54653 -13.45684 -13.10089 -12.72404 -12.67428 -12.55214 -12.38940 -12.20551 -12.12904 -11.99750 -11.73491 -11.44241 -11.21111 -11.10004 -10.79592 -10.66129 -10.18930 -10.13069 -10.01975 -9.77448 -9.54325 -9.10236 -8.78225 -8.53231 -8.20192 -7.50950 -6.24979 -4.27487 1.19080 2.13341 2.26083 2.54103 2.99296 3.13031 3.17905 3.21121 3.26870 3.45840 3.73594 3.92539 4.21441 4.33828 4.38692 4.51148 4.63800 4.74026 4.84109 4.93024 5.02709 5.12266 5.23752 5.32730 5.38252 5.39770 5.50548 5.60116 5.66410 5.69173 5.81395 5.85944 6.05677 6.23049 6.37444 6.43089 6.57804 6.70144 6.77780 7.25368 7.38661 7.73038 7.81075 8.32087 8.48509 8.55988 8.84631 9.29845 10.87762 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.002577 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.076699 B =10860.914362 C =11510.520583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.418 4.418 3 H 0.094 0.906 4 C -0.098 4.098 5 C 0.119 3.881 6 N -0.629 5.629 7 C 0.719 3.281 8 O -0.559 6.559 9 N -0.643 5.643 10 C 0.276 3.724 11 C -0.282 4.282 12 C 0.051 3.949 13 N -0.320 5.320 14 C 0.233 3.767 15 C -0.535 4.535 16 H 0.085 0.915 17 C 0.076 3.924 18 N -0.888 5.888 19 Si 0.873 3.127 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.264 1.264 23 N -0.300 5.300 24 C 0.136 3.864 25 C -0.471 4.471 26 S 1.255 4.745 27 O -0.849 6.849 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.406 0.594 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.268 0.732 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.125 0.875 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.559 -26.147 -4.007 27.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.536 4.536 3 H 0.113 0.887 4 C -0.139 4.139 5 C -0.006 4.006 6 N -0.367 5.367 7 C 0.419 3.581 8 O -0.434 6.434 9 N -0.295 5.295 10 C 0.022 3.978 11 C -0.313 4.313 12 C -0.099 4.099 13 N -0.102 5.102 14 C 0.114 3.886 15 C -0.573 4.573 16 H 0.103 0.897 17 C -0.128 4.128 18 N -0.525 5.525 19 Si 0.699 3.301 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.188 1.188 23 N -0.131 5.131 24 C 0.013 3.987 25 C -0.608 4.608 26 S 1.453 4.547 27 O -0.844 6.844 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.243 0.757 36 H 0.180 0.820 37 H 0.186 0.814 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.117 0.883 43 H 0.143 0.857 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.503 -26.011 -3.164 27.256 hybrid contribution 0.147 2.817 -0.225 2.830 sum -7.356 -23.194 -3.389 24.567 Atomic orbital electron populations 1.21537 0.91932 1.02581 1.03094 1.27516 1.03216 1.10236 1.12643 0.88738 1.22162 0.95641 1.01052 0.95009 1.21124 0.89143 0.90217 1.00105 1.47078 1.53490 1.23405 1.12742 1.15501 0.78741 0.79394 0.84420 1.90868 1.61209 1.75937 1.15345 1.41570 1.51715 1.20459 1.15739 1.18817 0.98753 0.88407 0.91855 1.21527 1.12896 1.00387 0.96502 1.22557 0.97073 0.96802 0.93431 1.48597 1.37502 1.17917 1.06159 1.20037 0.90575 0.78618 0.99415 1.21109 1.18993 1.04611 1.12604 0.89730 1.24840 0.96824 0.96087 0.95029 1.69869 1.41263 1.14508 1.26875 0.86898 0.82848 0.79696 0.80612 1.19699 1.20534 1.18828 1.77388 1.22449 1.00119 1.13109 1.19895 0.96635 1.03024 0.79168 1.26720 1.16191 1.11419 1.06447 1.69989 0.86543 1.12500 0.85684 1.93116 1.59884 1.82614 1.48771 0.92066 0.91516 0.91854 0.89914 0.90382 0.89172 0.89467 0.75703 0.81983 0.81422 0.94036 0.93337 0.92167 0.89748 0.88339 0.85694 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 8.71 37.16 0.32 -0.86 16 2 C -0.42 -3.51 2.60 -25.69 -0.07 -3.58 16 3 H 0.09 1.07 7.91 -51.46 -0.41 0.66 16 4 C -0.10 -0.63 5.62 -25.02 -0.14 -0.77 16 5 C 0.12 0.66 4.92 -5.02 -0.02 0.64 16 6 N -0.63 -5.18 2.25 -183.60 -0.41 -5.60 16 7 C 0.72 9.68 8.23 -86.92 -0.72 8.96 16 8 O -0.56 -9.18 13.31 5.29 0.07 -9.11 16 9 N -0.64 -9.73 5.35 -15.51 -0.08 -9.81 16 10 C 0.28 5.45 8.11 -154.36 -1.25 4.20 16 11 C -0.28 -5.43 9.61 -39.83 -0.38 -5.81 16 12 C 0.05 0.97 11.44 -17.24 -0.20 0.78 16 13 N -0.32 -7.24 3.67 -62.56 -0.23 -7.47 16 14 C 0.23 5.51 5.33 -5.19 -0.03 5.49 16 15 C -0.54 -15.18 9.78 -34.44 -0.34 -15.51 16 16 H 0.08 2.73 8.06 -52.49 -0.42 2.31 16 17 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -26.76 13.96 55.43 0.77 -25.99 16 19 Si 0.87 20.15 27.47 -169.99 -4.67 15.48 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 23 N -0.30 -6.85 12.42 31.44 0.39 -6.46 16 24 C 0.14 0.73 5.26 -6.59 -0.03 0.69 16 25 C -0.47 -3.23 5.88 33.18 0.19 -3.03 16 26 S 1.26 8.90 12.30 -107.50 -1.32 7.58 16 27 O -0.85 -11.64 17.27 -35.23 -0.61 -12.25 16 28 H 0.06 0.68 7.74 -51.93 -0.40 0.28 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.29 7.98 -51.93 -0.41 -0.13 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.09 0.09 7.44 -51.93 -0.39 -0.29 16 34 H 0.09 0.57 7.81 -51.93 -0.41 0.16 16 35 H 0.41 5.15 6.55 -40.82 -0.27 4.88 16 36 H 0.16 3.03 5.91 -52.49 -0.31 2.72 16 37 H 0.17 2.55 8.06 -52.49 -0.42 2.12 16 38 H 0.04 0.98 7.20 -51.93 -0.37 0.60 16 39 H 0.05 1.04 7.49 -51.93 -0.39 0.65 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.08 0.47 6.22 -51.93 -0.32 0.15 16 42 H 0.10 0.12 7.79 -51.93 -0.40 -0.28 16 43 H 0.12 0.71 8.14 -51.92 -0.42 0.28 16 44 H 0.09 0.92 8.01 -51.93 -0.42 0.51 16 LS Contribution 364.75 15.07 5.50 5.50 Total: -1.00 -40.22 364.75 -9.56 -49.78 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.20 Total: 5.12 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -2.76 Total: -6.77 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: 0.44 Total: -55.32 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.54 Total: -21.36 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.67 Total: 15.48 kcal Atomic # 16 Polarization: 8.90 SS G_CDS: -1.32 Total: 7.58 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -40.22 -9.56 -49.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590608289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.603 kcal (2) G-P(sol) polarization free energy of solvation -40.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds