Wall clock time and date at job start Sat Apr 11 2020 05:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 108.75402 * 2 1 4 4 C 1.54973 * 108.70007 * 241.70419 * 2 1 3 5 5 C 1.54280 * 112.49904 * 197.93363 * 4 2 1 6 6 N 1.43382 * 113.13138 * 319.03429 * 5 4 2 7 7 C 1.34781 * 121.07558 * 281.97060 * 6 5 4 8 8 O 1.21591 * 119.99452 * 0.07732 * 7 6 5 9 9 N 1.34772 * 120.00503 * 180.02562 * 7 6 5 10 10 C 1.40190 * 120.00338 * 180.02562 * 9 7 6 11 11 C 1.40404 * 125.97129 * 359.97438 * 10 9 7 12 12 C 1.35250 * 107.86628 * 180.02562 * 11 10 9 13 13 N 1.34959 * 107.85807 * 0.02562 * 12 11 10 14 14 C 1.46504 * 125.97324 * 179.97438 * 13 12 11 15 15 C 1.50698 * 109.46816 * 124.99872 * 14 13 12 16 16 H 1.07997 * 120.00626 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99967 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00537 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99804 * 0.02562 * 17 15 14 20 20 H 1.48490 * 109.47258 * 90.00259 * 19 17 15 21 21 H 1.48501 * 109.46945 * 210.00214 * 19 17 15 22 22 H 1.48508 * 109.47160 * 329.99851 * 19 17 15 23 23 N 1.31213 * 125.97169 * 179.69937 * 10 9 7 24 24 C 1.49078 * 117.89361 * 102.04401 * 6 5 4 25 25 C 1.44463 * 111.31183 * 275.86207 * 24 6 5 26 26 S 1.79010 * 108.79158 * 118.35463 * 2 1 3 27 27 O 1.42093 * 109.47433 * 325.37070 * 26 2 1 28 28 H 1.09001 * 109.47341 * 301.63904 * 1 2 3 29 29 H 1.08991 * 109.47186 * 61.64620 * 1 2 3 30 30 H 1.09004 * 109.46963 * 181.64100 * 1 2 3 31 31 H 1.09001 * 108.87346 * 318.70824 * 4 2 1 32 32 H 1.08995 * 108.87468 * 77.25549 * 4 2 1 33 33 H 1.09001 * 108.74310 * 79.99412 * 5 4 2 34 34 H 1.09003 * 108.73943 * 198.20035 * 5 4 2 35 35 H 0.97004 * 119.99897 * 0.02562 * 9 7 6 36 36 H 1.08000 * 126.06772 * 0.02562 * 11 10 9 37 37 H 1.07999 * 126.06525 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.47142 * 244.99374 * 14 13 12 39 39 H 1.08999 * 109.47361 * 5.00124 * 14 13 12 40 40 H 0.96993 * 120.00735 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.10390 * 155.40505 * 24 6 5 42 42 H 1.09003 * 109.09890 * 36.31343 * 24 6 5 43 43 H 1.09007 * 109.04580 * 180.73538 * 25 24 6 44 44 H 1.09000 * 109.04982 * 299.70309 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8805 1.0321 0.0000 4 6 2.0269 -0.6958 -1.2925 5 6 3.5007 -1.1413 -1.1940 6 7 4.3393 -0.1744 -0.5477 7 6 4.7700 0.9218 -1.2029 8 8 4.4468 1.1040 -2.3608 9 7 5.5581 1.8165 -0.5745 10 6 6.0056 2.9569 -1.2559 11 6 5.7115 3.2903 -2.5877 12 6 6.3285 4.4607 -2.8684 13 7 6.9894 4.8564 -1.7603 14 6 7.7924 6.0743 -1.6260 15 6 7.2935 6.8781 -0.4530 16 1 6.4613 6.5181 0.1336 17 6 7.8989 8.0738 -0.1291 18 7 7.4639 8.7751 0.8948 19 14 9.3371 8.6977 -1.1449 20 1 8.8291 9.5414 -2.2563 21 1 10.2386 9.5042 -0.2835 22 1 10.0870 7.5435 -1.7024 23 7 6.7684 3.9019 -0.7590 24 6 4.7215 -0.4208 0.8721 25 6 3.6981 0.0443 1.7795 26 16 2.1067 -0.8049 1.4914 27 8 1.2157 -0.5165 2.5601 28 1 -0.3634 0.5391 0.8749 29 1 -0.3633 0.4880 -0.9043 30 1 -0.3633 -1.0273 0.0294 31 1 1.4059 -1.5712 -1.4827 32 1 1.9244 -0.0030 -2.1277 33 1 3.5475 -2.0758 -0.6349 34 1 3.8816 -1.3165 -2.2002 35 1 5.8156 1.6712 0.3494 36 1 5.1010 2.7144 -3.2674 37 1 6.2984 4.9850 -3.8122 38 1 8.8363 5.8053 -1.4644 39 1 7.7069 6.6681 -2.5360 40 1 7.8900 9.6161 1.1229 41 1 5.6532 0.1026 1.0867 42 1 4.8709 -1.4902 1.0208 43 1 4.0202 -0.1415 2.8042 44 1 3.5588 1.1162 1.6394 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590608289.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:16 Heat of formation + Delta-G solvation = 7.905700 kcal Electronic energy + Delta-G solvation = -27661.298906 eV Core-core repulsion = 23742.058897 eV Total energy + Delta-G solvation = -3919.240009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.31933 -41.22205 -38.04199 -36.89800 -36.38308 -35.62950 -35.03497 -33.08447 -32.62408 -31.01766 -29.93670 -28.80559 -25.56046 -24.44666 -24.31518 -23.34590 -22.40939 -21.51225 -20.42735 -19.13680 -19.01445 -18.43376 -18.12214 -17.49275 -17.08139 -16.73285 -16.53010 -16.27589 -16.00193 -15.61857 -15.49007 -15.29624 -14.83104 -14.79472 -14.38982 -14.34828 -14.15841 -13.88816 -13.80462 -13.44883 -13.41782 -13.01220 -12.87357 -12.65506 -12.53649 -12.35058 -12.28209 -12.09868 -11.85498 -11.74028 -11.58050 -11.47388 -11.07451 -10.89755 -10.88576 -9.92432 -9.71912 -9.29059 -9.03810 -8.40451 -6.51243 0.55298 1.03756 1.12928 1.34654 1.38246 1.47971 1.52994 1.68742 2.01615 2.26875 2.39698 2.76532 2.77993 2.92353 3.64742 3.77076 3.87080 3.93529 4.07512 4.18435 4.19995 4.29817 4.40841 4.50369 4.58192 4.64057 4.71042 4.81658 4.84097 4.86025 4.91403 4.95199 5.00899 5.06938 5.14536 5.16047 5.22169 5.32419 5.64658 5.83907 5.90099 5.99984 6.39089 6.52575 6.59362 7.06761 7.12310 7.43004 8.76888 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018355 B = 0.002577 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.076699 B =10860.914362 C =11510.520583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.421 4.421 3 H 0.055 0.945 4 C -0.093 4.093 5 C 0.104 3.896 6 N -0.615 5.615 7 C 0.711 3.289 8 O -0.592 6.592 9 N -0.643 5.643 10 C 0.282 3.718 11 C -0.292 4.292 12 C 0.059 3.941 13 N -0.346 5.346 14 C 0.240 3.760 15 C -0.549 4.549 16 H 0.022 0.978 17 C 0.013 3.987 18 N -0.944 5.944 19 Si 0.958 3.042 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.237 1.237 23 N -0.353 5.353 24 C 0.126 3.874 25 C -0.469 4.469 26 S 1.332 4.668 27 O -0.915 6.915 28 H 0.030 0.970 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.124 0.876 32 H 0.045 0.955 33 H 0.153 0.847 34 H 0.083 0.917 35 H 0.415 0.585 36 H 0.169 0.831 37 H 0.210 0.790 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.272 0.728 41 H 0.085 0.915 42 H 0.161 0.839 43 H 0.144 0.856 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.142 -29.010 -5.844 30.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.539 4.539 3 H 0.073 0.927 4 C -0.133 4.133 5 C -0.019 4.019 6 N -0.352 5.352 7 C 0.413 3.587 8 O -0.470 6.470 9 N -0.296 5.296 10 C 0.026 3.974 11 C -0.323 4.323 12 C -0.088 4.088 13 N -0.128 5.128 14 C 0.121 3.879 15 C -0.587 4.587 16 H 0.041 0.959 17 C -0.186 4.186 18 N -0.583 5.583 19 Si 0.779 3.221 20 H -0.177 1.177 21 H -0.206 1.206 22 H -0.160 1.160 23 N -0.184 5.184 24 C 0.005 3.995 25 C -0.607 4.607 26 S 1.531 4.469 27 O -0.911 6.911 28 H 0.049 0.951 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.142 0.858 32 H 0.064 0.936 33 H 0.171 0.829 34 H 0.102 0.898 35 H 0.254 0.746 36 H 0.186 0.814 37 H 0.227 0.773 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.179 0.821 43 H 0.162 0.838 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.132 -28.952 -4.984 30.010 hybrid contribution -0.450 3.604 0.418 3.656 sum -6.581 -25.347 -4.565 26.583 Atomic orbital electron populations 1.21579 0.92372 1.03958 1.01577 1.27621 1.03089 1.08510 1.14707 0.92651 1.22182 0.97213 1.01610 0.92265 1.21603 0.87625 0.91459 1.01180 1.47216 1.52569 1.21652 1.13777 1.15822 0.78393 0.80197 0.84332 1.90826 1.62258 1.76904 1.16966 1.41696 1.52071 1.19665 1.16152 1.19197 0.97151 0.88698 0.92334 1.21735 1.13250 1.00815 0.96519 1.23251 0.95138 0.96586 0.93868 1.48486 1.39038 1.18058 1.07208 1.19871 0.90711 0.78881 0.98475 1.21241 1.17694 1.05768 1.13956 0.95917 1.25969 1.00393 0.95908 0.96307 1.70054 1.43502 1.15339 1.29390 0.85578 0.78040 0.79750 0.78769 1.17732 1.20594 1.16012 1.77297 1.24938 1.01515 1.14619 1.20327 0.95679 1.06819 0.76716 1.26767 1.16479 1.09138 1.08274 1.69035 0.84588 1.10467 0.82814 1.92994 1.62455 1.83924 1.51695 0.95102 0.91662 0.88922 0.85822 0.93609 0.82930 0.89849 0.74643 0.81355 0.77322 0.93535 0.90061 0.91864 0.89729 0.82142 0.83804 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.71 71.98 0.63 -1.80 16 2 C -0.42 -6.92 2.60 31.27 0.08 -6.84 16 3 H 0.05 1.35 7.91 -2.68 -0.02 1.33 16 4 C -0.09 -1.00 5.62 31.70 0.18 -0.82 16 5 C 0.10 0.81 4.92 87.39 0.43 1.24 16 6 N -0.62 -8.87 2.25 -853.06 -1.92 -10.79 16 7 C 0.71 18.96 8.23 179.05 1.47 20.44 16 8 O -0.59 -19.54 13.31 -4.00 -0.05 -19.60 16 9 N -0.64 -19.80 5.35 -321.23 -1.72 -21.52 16 10 C 0.28 11.43 8.11 133.31 1.08 12.51 16 11 C -0.29 -11.30 9.61 22.11 0.21 -11.09 16 12 C 0.06 2.24 11.44 83.52 0.96 3.19 16 13 N -0.35 -15.78 3.67 -351.84 -1.29 -17.07 16 14 C 0.24 11.28 5.33 85.63 0.46 11.73 16 15 C -0.55 -32.24 9.78 25.60 0.25 -31.99 16 16 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 17 C 0.01 0.74 5.47 84.66 0.46 1.20 16 18 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 19 Si 0.96 41.05 27.47 68.60 1.88 42.93 16 20 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 23 N -0.35 -16.70 12.42 -54.43 -0.68 -17.38 16 24 C 0.13 0.96 5.26 83.30 0.44 1.39 16 25 C -0.47 -5.71 5.88 69.41 0.41 -5.30 16 26 S 1.33 16.58 12.30 -56.49 -0.69 15.89 16 27 O -0.91 -24.94 17.27 -148.98 -2.57 -27.51 16 28 H 0.03 0.72 7.74 -2.39 -0.02 0.70 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.12 0.35 7.98 -2.39 -0.02 0.34 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.15 -0.68 7.44 -2.39 -0.02 -0.69 16 34 H 0.08 0.83 7.81 -2.39 -0.02 0.81 16 35 H 0.42 10.76 6.55 -92.71 -0.61 10.16 16 36 H 0.17 6.30 5.91 -2.91 -0.02 6.29 16 37 H 0.21 5.78 8.06 -2.91 -0.02 5.75 16 38 H 0.05 2.12 7.20 -2.39 -0.02 2.11 16 39 H 0.08 3.27 7.49 -2.39 -0.02 3.25 16 40 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 41 H 0.08 0.74 6.22 -2.39 -0.01 0.73 16 42 H 0.16 -0.62 7.79 -2.39 -0.02 -0.64 16 43 H 0.14 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.06 1.20 8.01 -2.39 -0.02 1.18 16 Total: -1.00 -97.68 364.75 0.67 -97.01 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.36 Total: 22.93 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 7.05 Total: -6.14 kcal Atomic # 7 Polarization: -120.21 SS G_CDS: -5.31 Total: -125.51 kcal Atomic # 8 Polarization: -44.48 SS G_CDS: -2.63 Total: -47.11 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 1.88 Total: 42.93 kcal Atomic # 16 Polarization: 16.58 SS G_CDS: -0.69 Total: 15.89 kcal Total: -97.68 0.67 -97.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590608289.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.916 kcal (2) G-P(sol) polarization free energy of solvation -97.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds