Wall clock time and date at job start Sat Apr 11 2020 05:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.32100 * 2 1 4 4 C 1.49604 * 109.32705 * 119.46933 * 2 1 3 5 5 C 1.55455 * 113.59541 * 209.37961 * 4 2 1 6 6 N 1.47204 * 115.76036 * 316.29463 * 5 4 2 7 7 C 1.34777 * 119.02779 * 136.93207 * 6 5 4 8 8 O 1.21593 * 119.99953 * 359.73365 * 7 6 5 9 9 N 1.34777 * 119.99726 * 180.02562 * 7 6 5 10 10 C 1.40196 * 119.99786 * 179.72659 * 9 7 6 11 11 C 1.40403 * 125.97362 * 359.72037 * 10 9 7 12 12 C 1.35241 * 107.87032 * 179.83093 * 11 10 9 13 13 N 1.34964 * 107.85500 * 0.42559 * 12 11 10 14 14 C 1.46503 * 125.97580 * 179.71183 * 13 12 11 15 15 C 1.50700 * 109.47530 * 124.99999 * 14 13 12 16 16 H 1.08003 * 119.99551 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00295 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99826 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00071 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47255 * 89.99535 * 19 17 15 21 21 H 1.48502 * 109.47138 * 209.99865 * 19 17 15 22 22 H 1.48503 * 109.46834 * 329.99682 * 19 17 15 23 23 N 1.31207 * 125.97268 * 180.02562 * 10 9 7 24 24 C 1.42849 * 121.94366 * 316.66228 * 6 5 4 25 25 C 1.53961 * 108.12125 * 96.00297 * 24 6 5 26 26 S 1.74759 * 112.56515 * 279.21455 * 25 24 6 27 27 O 1.42100 * 109.46636 * 178.22285 * 26 25 24 28 28 H 1.09004 * 109.46830 * 179.64356 * 1 2 3 29 29 H 1.09002 * 109.47163 * 299.64562 * 1 2 3 30 30 H 1.09000 * 109.47530 * 59.64840 * 1 2 3 31 31 H 1.08991 * 108.68724 * 330.48112 * 4 2 1 32 32 H 1.09000 * 108.68607 * 88.55895 * 4 2 1 33 33 H 1.09000 * 108.38414 * 194.59347 * 5 4 2 34 34 H 1.09006 * 108.19770 * 77.84982 * 5 4 2 35 35 H 0.97000 * 120.00483 * 359.73178 * 9 7 6 36 36 H 1.08001 * 126.06561 * 359.97438 * 11 10 9 37 37 H 1.08002 * 126.07326 * 180.16271 * 12 11 10 38 38 H 1.09004 * 109.46973 * 245.00121 * 14 13 12 39 39 H 1.09000 * 109.47321 * 4.99782 * 14 13 12 40 40 H 0.97001 * 119.99983 * 180.02562 * 18 17 15 41 41 H 1.09007 * 109.73073 * 215.65648 * 24 6 5 42 42 H 1.08998 * 109.73295 * 336.33792 * 24 6 5 43 43 H 1.09001 * 108.86285 * 40.00654 * 25 24 6 44 44 H 1.08997 * 108.86677 * 158.52066 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8906 1.0287 0.0000 4 6 2.0251 -0.6945 1.2291 5 6 3.4024 -0.1728 1.7264 6 7 4.4181 0.0461 0.6837 7 6 5.1747 1.1605 0.7314 8 8 5.0098 1.9696 1.6239 9 7 6.1101 1.3808 -0.2137 10 6 6.8932 2.5428 -0.1673 11 6 6.8060 3.5581 0.7985 12 6 7.7292 4.4990 0.4961 13 7 8.3718 4.1035 -0.6229 14 6 9.4460 4.8326 -1.3017 15 6 10.6488 3.9362 -1.4455 16 1 10.6165 2.9246 -1.0686 17 6 11.7905 4.4074 -2.0583 18 7 12.8403 3.6251 -2.1833 19 14 11.8467 6.1572 -2.7096 20 1 12.3419 7.0662 -1.6448 21 1 12.7597 6.2211 -3.8791 22 1 10.4830 6.5756 -3.1229 23 7 7.8318 2.8742 -1.0220 24 6 4.6294 -0.8904 -0.3741 25 6 3.8252 -0.4184 -1.5993 26 16 2.1357 -0.8541 -1.5009 27 8 1.4502 -0.3530 -2.6403 28 1 -0.3633 -1.0277 -0.0064 29 1 -0.3633 0.5083 0.8932 30 1 -0.3634 0.5193 -0.8868 31 1 1.2929 -0.5600 2.0251 32 1 2.1162 -1.7595 1.0157 33 1 3.8018 -0.8882 2.4454 34 1 3.2410 0.7710 2.2475 35 1 6.2414 0.7356 -0.9259 36 1 6.1243 3.5823 1.6359 37 1 7.9159 5.4077 1.0491 38 1 9.1056 5.1451 -2.2890 39 1 9.7157 5.7111 -0.7156 40 1 13.6437 3.9567 -2.6140 41 1 5.6898 -0.9310 -0.6234 42 1 4.2851 -1.8776 -0.0659 43 1 3.9055 0.6659 -1.6771 44 1 4.2520 -0.8682 -2.4957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590608291.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:20 Heat of formation + Delta-G solvation = 4.995411 kcal Electronic energy + Delta-G solvation = -27504.718542 eV Core-core repulsion = 23585.352334 eV Total energy + Delta-G solvation = -3919.366208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.41938 -41.35327 -38.08163 -36.87181 -36.47614 -35.77847 -35.08173 -33.08133 -32.02069 -31.05531 -30.01555 -28.86905 -25.42916 -25.20224 -24.40802 -23.17206 -22.25612 -21.44536 -20.42286 -19.33192 -19.13833 -18.40221 -18.20746 -17.56062 -17.12666 -16.82289 -16.60397 -16.18925 -16.14479 -15.76737 -15.56574 -14.92568 -14.80319 -14.71617 -14.48789 -14.40730 -14.03591 -13.91170 -13.86765 -13.53681 -13.24290 -13.08758 -13.04933 -12.73419 -12.56252 -12.38307 -12.30623 -12.02356 -11.86851 -11.74745 -11.67567 -11.51585 -11.08947 -10.89552 -10.88470 -9.93935 -9.75517 -9.22999 -9.09173 -8.40208 -6.50380 0.58536 0.96402 1.07858 1.33885 1.37040 1.46432 1.59213 1.68063 1.97990 2.26074 2.29759 2.75807 2.82797 2.92270 3.58174 3.74485 3.84565 3.95547 3.99809 4.13270 4.14984 4.29656 4.41105 4.55019 4.56515 4.65672 4.68767 4.75890 4.79265 4.82232 4.86836 4.91041 5.06013 5.11658 5.19353 5.21692 5.24488 5.31291 5.63886 5.67518 5.85168 5.97632 6.36742 6.51081 6.57569 7.01551 7.12497 7.30353 8.76840 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020803 B = 0.002432 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.649516 B =11508.651354 C =11971.176080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.404 4.404 3 H 0.055 0.945 4 C -0.091 4.091 5 C 0.111 3.889 6 N -0.608 5.608 7 C 0.704 3.296 8 O -0.597 6.597 9 N -0.640 5.640 10 C 0.280 3.720 11 C -0.294 4.294 12 C 0.061 3.939 13 N -0.345 5.345 14 C 0.239 3.761 15 C -0.547 4.547 16 H 0.027 0.973 17 C 0.016 3.984 18 N -0.940 5.940 19 Si 0.954 3.046 20 H -0.252 1.252 21 H -0.280 1.280 22 H -0.243 1.243 23 N -0.350 5.350 24 C 0.132 3.868 25 C -0.524 4.524 26 S 1.342 4.658 27 O -0.927 6.927 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.027 0.973 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.062 0.938 35 H 0.417 0.583 36 H 0.168 0.832 37 H 0.212 0.788 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.273 0.727 41 H 0.088 0.912 42 H 0.166 0.834 43 H 0.058 0.942 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.713 -14.271 9.043 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.522 4.522 3 H 0.074 0.926 4 C -0.130 4.130 5 C -0.011 4.011 6 N -0.343 5.343 7 C 0.405 3.595 8 O -0.475 6.475 9 N -0.293 5.293 10 C 0.024 3.976 11 C -0.325 4.325 12 C -0.087 4.087 13 N -0.127 5.127 14 C 0.120 3.880 15 C -0.585 4.585 16 H 0.046 0.954 17 C -0.183 4.183 18 N -0.579 5.579 19 Si 0.775 3.225 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.166 1.166 23 N -0.181 5.181 24 C 0.007 3.993 25 C -0.662 4.662 26 S 1.541 4.459 27 O -0.923 6.923 28 H 0.116 0.884 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.081 0.919 35 H 0.256 0.744 36 H 0.185 0.815 37 H 0.228 0.772 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.106 0.894 42 H 0.184 0.816 43 H 0.077 0.923 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -24.454 -14.568 7.889 29.538 hybrid contribution 0.821 3.195 -0.741 3.381 sum -23.634 -11.373 7.148 27.185 Atomic orbital electron populations 1.21585 0.91214 1.04393 1.01886 1.26932 1.03469 1.08183 1.13599 0.92631 1.21398 0.94141 1.02145 0.95307 1.22271 0.87326 1.03301 0.88162 1.46535 1.37312 1.19699 1.30779 1.15945 0.79264 0.83048 0.81243 1.90816 1.71704 1.47139 1.37828 1.41690 1.36311 1.20781 1.30541 1.19194 0.93129 0.89569 0.95694 1.21726 1.08476 0.96188 1.06117 1.23254 0.93837 1.01791 0.89793 1.48503 1.28621 1.14478 1.21052 1.19892 0.82639 0.91536 0.93976 1.21209 0.97510 0.99485 1.40273 0.95421 1.25896 0.94199 1.03317 0.94919 1.70042 1.04674 1.39082 1.44122 0.85632 0.79893 0.77997 0.78959 1.17588 1.20524 1.16599 1.77293 1.14592 1.01263 1.24977 1.21022 1.00301 0.95391 0.82597 1.28162 1.22573 1.07357 1.08116 1.68517 0.80400 1.13658 0.83302 1.92988 1.69497 1.82166 1.47629 0.88415 0.90624 0.95385 0.87230 0.85471 0.87876 0.91891 0.74411 0.81501 0.77179 0.93945 0.89994 0.91824 0.89384 0.81630 0.92265 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.49 8.87 71.98 0.64 -0.85 16 2 C -0.40 -4.72 2.75 29.51 0.08 -4.64 16 3 H 0.05 1.09 7.95 -2.38 -0.02 1.07 16 4 C -0.09 -0.34 5.02 30.35 0.15 -0.18 16 5 C 0.11 1.17 6.01 87.09 0.52 1.69 16 6 N -0.61 -9.92 2.46 -840.10 -2.07 -11.99 16 7 C 0.70 20.09 7.84 179.05 1.40 21.50 16 8 O -0.60 -21.02 12.73 -4.01 -0.05 -21.07 16 9 N -0.64 -20.57 5.24 -321.23 -1.68 -22.25 16 10 C 0.28 11.64 8.11 133.31 1.08 12.72 16 11 C -0.29 -11.69 9.61 22.11 0.21 -11.48 16 12 C 0.06 2.35 11.44 83.52 0.96 3.30 16 13 N -0.34 -15.94 3.67 -351.83 -1.29 -17.23 16 14 C 0.24 11.35 5.33 85.63 0.46 11.80 16 15 C -0.55 -31.93 9.79 25.60 0.25 -31.68 16 16 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 17 C 0.02 0.89 5.47 84.65 0.46 1.36 16 18 N -0.94 -58.15 13.96 21.45 0.30 -57.85 16 19 Si 0.95 41.24 27.47 68.60 1.88 43.12 16 20 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.24 -9.58 6.54 99.48 0.65 -8.93 16 23 N -0.35 -16.84 12.42 -54.43 -0.68 -17.52 16 24 C 0.13 1.18 5.09 87.38 0.44 1.62 16 25 C -0.52 -7.10 5.65 72.31 0.41 -6.69 16 26 S 1.34 16.17 12.38 -56.49 -0.70 15.47 16 27 O -0.93 -26.15 17.82 -148.98 -2.65 -28.80 16 28 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.07 0.72 8.04 -2.39 -0.02 0.70 16 30 H 0.03 0.49 8.00 -2.39 -0.02 0.48 16 31 H 0.11 0.14 7.66 -2.39 -0.02 0.12 16 32 H 0.13 -0.71 7.78 -2.39 -0.02 -0.73 16 33 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 1.10 6.88 -2.38 -0.02 1.08 16 35 H 0.42 11.31 6.43 -92.71 -0.60 10.72 16 36 H 0.17 6.47 5.91 -2.91 -0.02 6.45 16 37 H 0.21 5.93 8.06 -2.91 -0.02 5.91 16 38 H 0.04 1.99 7.20 -2.39 -0.02 1.97 16 39 H 0.08 3.33 7.50 -2.39 -0.02 3.32 16 40 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 41 H 0.09 0.87 6.52 -2.38 -0.02 0.86 16 42 H 0.17 -0.46 7.92 -2.39 -0.02 -0.48 16 43 H 0.06 1.32 7.75 -4.12 -0.03 1.29 16 44 H 0.14 1.58 8.14 -4.18 -0.03 1.55 16 Total: -1.00 -97.83 364.27 0.48 -97.35 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: 0.35 Total: 22.28 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 7.07 Total: -1.52 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -5.42 Total: -126.83 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: -2.71 Total: -49.87 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 1.88 Total: 43.12 kcal Atomic # 16 Polarization: 16.17 SS G_CDS: -0.70 Total: 15.47 kcal Total: -97.83 0.48 -97.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590608291.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.346 kcal (2) G-P(sol) polarization free energy of solvation -97.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds