Wall clock time and date at job start Sat Apr 11 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47622 * 2 1 4 4 C 1.50697 * 109.47154 * 120.00415 * 2 1 3 5 5 H 1.08001 * 120.00153 * 119.99810 * 4 2 1 6 6 C 1.37878 * 120.00117 * 299.99764 * 4 2 1 7 7 N 1.31521 * 119.99940 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00316 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47043 * 90.00200 * 8 6 4 10 10 H 1.48500 * 109.47052 * 209.99801 * 8 6 4 11 11 H 1.48492 * 109.47009 * 330.00303 * 8 6 4 12 12 N 1.46499 * 109.47154 * 240.00147 * 2 1 3 13 13 C 1.46499 * 120.00187 * 300.00088 * 12 2 1 14 14 S 1.65600 * 119.99939 * 119.99921 * 12 2 1 15 15 O 1.42110 * 106.40330 * 156.46084 * 14 12 2 16 16 O 1.42092 * 106.40503 * 23.54388 * 14 12 2 17 17 N 1.65599 * 107.21837 * 269.99921 * 14 12 2 18 18 C 1.46927 * 120.62781 * 90.00274 * 17 14 12 19 19 C 1.53188 * 108.77683 * 233.58515 * 18 17 14 20 20 H 1.09004 * 109.49604 * 65.34423 * 19 18 17 21 21 C 1.52997 * 109.50103 * 185.41366 * 19 18 17 22 22 C 1.53046 * 109.31222 * 305.36721 * 19 18 17 23 23 F 1.39901 * 109.45767 * 181.38486 * 22 19 18 24 24 F 1.39899 * 109.45770 * 301.34349 * 22 19 18 25 25 C 1.53035 * 109.53906 * 61.36208 * 22 19 18 26 26 H 1.09002 * 109.50127 * 58.58638 * 25 22 19 27 27 C 1.52996 * 109.52593 * 178.66842 * 25 22 19 28 28 C 1.46930 * 120.63297 * 269.97553 * 17 14 12 29 29 H 1.08998 * 109.47114 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46809 * 299.99464 * 1 2 3 31 31 H 1.08996 * 109.47095 * 59.99861 * 1 2 3 32 32 H 0.96992 * 120.00415 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47251 * 269.99933 * 13 12 2 34 34 H 1.09001 * 109.46941 * 30.00123 * 13 12 2 35 35 H 1.09001 * 109.47162 * 149.99793 * 13 12 2 36 36 H 1.09004 * 109.58352 * 113.79910 * 18 17 14 37 37 H 1.09002 * 109.70410 * 353.44651 * 18 17 14 38 38 H 1.09002 * 109.47153 * 59.99918 * 21 19 18 39 39 H 1.09001 * 109.46832 * 300.00109 * 21 19 18 40 40 H 1.09004 * 109.47261 * 180.02562 * 21 19 18 41 41 H 1.09003 * 109.47500 * 179.85649 * 27 25 22 42 42 H 1.08998 * 109.47049 * 299.85347 * 27 25 22 43 43 H 1.09001 * 109.46970 * 59.85312 * 27 25 22 44 44 H 1.08998 * 109.58622 * 246.20254 * 28 17 14 45 45 H 1.08998 * 109.58458 * 6.49211 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3225 -1.1197 4.0079 9 1 3.6305 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4881 -2.5654 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2862 15 8 3.7119 -0.8788 -2.9815 16 8 3.5794 1.1829 -1.5749 17 7 1.9607 0.8091 -3.3998 18 6 1.4373 2.1661 -3.1916 19 6 -0.0899 2.1285 -3.3057 20 1 -0.5010 1.5324 -2.4909 21 6 -0.6432 3.5527 -3.2261 22 6 -0.4821 1.5023 -4.6459 23 9 -1.8758 1.4952 -4.7669 24 9 0.0724 2.2505 -5.6899 25 6 0.0429 0.0663 -4.7130 26 1 -0.3694 -0.5108 -3.8853 27 6 -0.3778 -0.5705 -6.0390 28 6 1.5716 0.0806 -4.6150 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 0.7090 1.1613 3.4844 33 1 2.4157 -2.7377 -0.9718 34 1 0.6904 -2.3001 -0.9848 35 1 1.6238 -2.2851 -2.5003 36 1 1.8440 2.8349 -3.9502 37 1 1.7211 2.5216 -2.2010 38 1 -0.2328 4.1481 -4.0417 39 1 -0.3612 3.9993 -2.2726 40 1 -1.7299 3.5254 -3.3068 41 1 -0.0013 -1.5923 -6.0871 42 1 -1.4655 -0.5804 -6.1084 43 1 0.0338 0.0077 -6.8664 44 1 1.9893 0.5794 -5.4895 45 1 1.9461 -0.9418 -4.5637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599380009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:24 Heat of formation + Delta-G solvation = -180.726023 kcal Electronic energy + Delta-G solvation = -31188.381049 eV Core-core repulsion = 26810.272169 eV Total energy + Delta-G solvation = -4378.108880 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.04295 -46.96150 -38.34973 -36.86709 -36.22613 -35.32346 -34.06370 -32.80639 -32.63182 -29.16974 -27.10764 -26.78524 -25.67165 -25.20895 -24.23875 -21.52206 -20.95262 -20.22008 -18.60773 -17.69154 -17.20846 -17.03888 -16.92200 -16.48008 -16.12828 -15.92476 -15.07911 -14.48175 -14.06524 -13.95354 -13.85505 -13.55189 -13.38435 -13.27363 -13.14329 -13.06900 -12.89695 -12.82095 -12.61087 -12.28139 -12.07498 -12.01652 -11.97356 -11.78842 -11.58978 -11.45998 -11.38182 -11.28261 -11.10968 -10.98958 -10.90054 -10.84466 -10.48517 -10.32347 -10.28159 -10.06665 -9.34395 -9.07055 -8.49830 -8.03670 -6.12277 -4.18708 1.02761 3.25150 3.26610 3.33204 3.36245 3.64926 3.92612 3.97707 4.21358 4.30327 4.36496 4.48840 4.84315 4.86739 4.95321 5.06201 5.19487 5.22325 5.28057 5.31327 5.42042 5.51827 5.56551 5.58086 5.67008 5.74786 5.81953 5.90125 5.97963 6.04507 6.07075 6.13402 6.29579 6.47777 6.57694 6.71049 6.75781 6.93497 7.38463 7.56782 7.72726 7.97887 8.21733 8.83498 9.47512 10.93382 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.004541 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.955888 B = 6164.160128 C = 6744.587717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.989 5.989 13 C 0.110 3.890 14 S 2.775 3.225 15 O -0.991 6.991 16 O -0.968 6.968 17 N -1.014 6.014 18 C 0.130 3.870 19 C -0.148 4.148 20 H 0.113 0.887 21 C -0.151 4.151 22 C 0.301 3.699 23 F -0.200 7.200 24 F -0.198 7.198 25 C -0.146 4.146 26 H 0.107 0.893 27 C -0.150 4.150 28 C 0.130 3.870 29 H 0.034 0.966 30 H 0.094 0.906 31 H 0.010 0.990 32 H 0.263 0.737 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 0.550 -15.017 15.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.832 5.832 13 C -0.037 4.037 14 S 2.786 3.214 15 O -0.975 6.975 16 O -0.952 6.952 17 N -0.850 5.850 18 C 0.004 3.996 19 C -0.168 4.168 20 H 0.131 0.869 21 C -0.208 4.208 22 C 0.265 3.735 23 F -0.181 7.181 24 F -0.179 7.179 25 C -0.166 4.166 26 H 0.125 0.875 27 C -0.208 4.208 28 C 0.004 3.996 29 H 0.053 0.947 30 H 0.112 0.888 31 H 0.029 0.971 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.154 0.747 -14.903 15.489 hybrid contribution -0.365 -0.436 0.812 0.991 sum -4.518 0.311 -14.091 14.801 Atomic orbital electron populations 1.22165 0.98281 0.99789 1.00504 1.18733 0.91227 0.92931 0.80556 0.92444 1.21318 1.31619 1.13045 0.89994 0.91963 1.24897 0.94905 0.95001 0.98996 1.69842 1.36510 1.22697 1.23844 0.86499 0.78692 0.79974 0.82266 1.20538 1.21175 1.19883 1.57784 1.69991 1.19801 1.35634 1.21148 1.01821 0.82091 0.98601 1.02187 0.73839 0.73137 0.72256 1.93537 1.68988 1.60278 1.74662 1.93600 1.73729 1.55878 1.71962 1.58609 1.67358 1.24484 1.34588 1.21414 0.90815 0.83074 1.04307 1.22615 0.98515 0.99755 0.95936 0.86930 1.21774 1.01596 0.94013 1.03451 1.20973 0.74441 0.91872 0.86203 1.92977 1.31192 1.97260 1.96643 1.92953 1.85237 1.78724 1.60983 1.22541 0.98221 0.93929 1.01942 0.87477 1.21780 1.02335 1.01405 0.95306 1.21384 0.92041 0.98170 0.88025 0.94702 0.88788 0.97141 0.92667 0.93177 0.90914 0.93502 0.90462 0.87497 0.91835 0.90613 0.91549 0.91021 0.91488 0.91669 0.90387 0.88130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.95 37.16 0.33 -2.78 16 2 C 0.27 6.19 2.62 -69.08 -0.18 6.01 16 3 H 0.06 1.47 6.91 -51.93 -0.36 1.11 16 4 C -0.52 -13.54 8.37 -34.44 -0.29 -13.83 16 5 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.95 11.32 55.43 0.63 -23.33 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.99 -19.39 3.12 -115.86 -0.36 -19.75 16 13 C 0.11 1.84 9.53 59.85 0.57 2.41 16 14 S 2.78 52.34 6.06 -107.50 -0.65 51.69 16 15 O -0.99 -19.65 15.92 -57.17 -0.91 -20.56 16 16 O -0.97 -21.64 15.42 -57.17 -0.88 -22.52 16 17 N -1.01 -14.81 3.35 -113.52 -0.38 -15.19 16 18 C 0.13 1.77 5.45 -3.71 -0.02 1.75 16 19 C -0.15 -1.84 2.53 -90.50 -0.23 -2.07 16 20 H 0.11 1.50 6.27 -51.93 -0.33 1.17 16 21 C -0.15 -1.66 8.95 37.16 0.33 -1.33 16 22 C 0.30 3.64 1.16 -26.69 -0.03 3.61 16 23 F -0.20 -2.57 15.93 2.25 0.04 -2.54 16 24 F -0.20 -2.48 15.17 2.25 0.03 -2.45 16 25 C -0.15 -1.59 2.53 -90.50 -0.23 -1.82 16 26 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 27 C -0.15 -1.34 8.95 37.16 0.33 -1.01 16 28 C 0.13 1.56 5.46 -3.71 -0.02 1.54 16 29 H 0.03 0.70 6.66 -51.93 -0.35 0.35 16 30 H 0.09 2.23 6.07 -51.93 -0.32 1.92 16 31 H 0.01 0.18 6.27 -51.93 -0.33 -0.15 16 32 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.17 6.43 -51.93 -0.33 0.84 16 35 H 0.05 0.64 7.79 -51.93 -0.40 0.23 16 36 H 0.08 0.94 7.92 -51.93 -0.41 0.53 16 37 H 0.11 1.59 7.13 -51.93 -0.37 1.22 16 38 H 0.06 0.66 7.83 -51.93 -0.41 0.25 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.71 7.78 -51.93 -0.40 0.31 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.60 7.78 -51.93 -0.40 0.19 16 43 H 0.06 0.57 7.84 -51.93 -0.41 0.17 16 44 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 45 H 0.10 1.16 7.12 -51.93 -0.37 0.79 16 LS Contribution 363.19 15.07 5.47 5.47 Total: -1.00 -30.35 363.19 -8.38 -38.72 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.82 Total: 0.69 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 0.48 Total: -5.93 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.11 Total: -58.27 kcal Atomic # 8 Polarization: -41.29 SS G_CDS: -1.79 Total: -43.08 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.07 Total: -4.98 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 52.34 SS G_CDS: -0.65 Total: 51.69 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.35 -8.38 -38.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599380009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.001 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds