Wall clock time and date at job start Sat Apr 11 2020 05:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47622 * 2 1 4 4 C 1.50697 * 109.47154 * 120.00415 * 2 1 3 5 5 H 1.08001 * 120.00153 * 119.99810 * 4 2 1 6 6 C 1.37878 * 120.00117 * 299.99764 * 4 2 1 7 7 N 1.31521 * 119.99940 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00316 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47043 * 90.00200 * 8 6 4 10 10 H 1.48500 * 109.47052 * 209.99801 * 8 6 4 11 11 H 1.48492 * 109.47009 * 330.00303 * 8 6 4 12 12 N 1.46499 * 109.47154 * 240.00147 * 2 1 3 13 13 C 1.46499 * 120.00187 * 300.00088 * 12 2 1 14 14 S 1.65600 * 119.99939 * 119.99921 * 12 2 1 15 15 O 1.42110 * 106.40330 * 156.46084 * 14 12 2 16 16 O 1.42092 * 106.40503 * 23.54388 * 14 12 2 17 17 N 1.65599 * 107.21837 * 269.99921 * 14 12 2 18 18 C 1.46927 * 120.62781 * 90.00274 * 17 14 12 19 19 C 1.53188 * 108.77683 * 233.58515 * 18 17 14 20 20 H 1.09004 * 109.49604 * 65.34423 * 19 18 17 21 21 C 1.52997 * 109.50103 * 185.41366 * 19 18 17 22 22 C 1.53046 * 109.31222 * 305.36721 * 19 18 17 23 23 F 1.39901 * 109.45767 * 181.38486 * 22 19 18 24 24 F 1.39899 * 109.45770 * 301.34349 * 22 19 18 25 25 C 1.53035 * 109.53906 * 61.36208 * 22 19 18 26 26 H 1.09002 * 109.50127 * 58.58638 * 25 22 19 27 27 C 1.52996 * 109.52593 * 178.66842 * 25 22 19 28 28 C 1.46930 * 120.63297 * 269.97553 * 17 14 12 29 29 H 1.08998 * 109.47114 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46809 * 299.99464 * 1 2 3 31 31 H 1.08996 * 109.47095 * 59.99861 * 1 2 3 32 32 H 0.96992 * 120.00415 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47251 * 269.99933 * 13 12 2 34 34 H 1.09001 * 109.46941 * 30.00123 * 13 12 2 35 35 H 1.09001 * 109.47162 * 149.99793 * 13 12 2 36 36 H 1.09004 * 109.58352 * 113.79910 * 18 17 14 37 37 H 1.09002 * 109.70410 * 353.44651 * 18 17 14 38 38 H 1.09002 * 109.47153 * 59.99918 * 21 19 18 39 39 H 1.09001 * 109.46832 * 300.00109 * 21 19 18 40 40 H 1.09004 * 109.47261 * 180.02562 * 21 19 18 41 41 H 1.09003 * 109.47500 * 179.85649 * 27 25 22 42 42 H 1.08998 * 109.47049 * 299.85347 * 27 25 22 43 43 H 1.09001 * 109.46970 * 59.85312 * 27 25 22 44 44 H 1.08998 * 109.58622 * 246.20254 * 28 17 14 45 45 H 1.08998 * 109.58458 * 6.49211 * 28 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3225 -1.1197 4.0079 9 1 3.6305 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4881 -2.5654 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2862 15 8 3.7119 -0.8788 -2.9815 16 8 3.5794 1.1829 -1.5749 17 7 1.9607 0.8091 -3.3998 18 6 1.4373 2.1661 -3.1916 19 6 -0.0899 2.1285 -3.3057 20 1 -0.5010 1.5324 -2.4909 21 6 -0.6432 3.5527 -3.2261 22 6 -0.4821 1.5023 -4.6459 23 9 -1.8758 1.4952 -4.7669 24 9 0.0724 2.2505 -5.6899 25 6 0.0429 0.0663 -4.7130 26 1 -0.3694 -0.5108 -3.8853 27 6 -0.3778 -0.5705 -6.0390 28 6 1.5716 0.0806 -4.6150 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 0.7090 1.1613 3.4844 33 1 2.4157 -2.7377 -0.9718 34 1 0.6904 -2.3001 -0.9848 35 1 1.6238 -2.2851 -2.5003 36 1 1.8440 2.8349 -3.9502 37 1 1.7211 2.5216 -2.2010 38 1 -0.2328 4.1481 -4.0417 39 1 -0.3612 3.9993 -2.2726 40 1 -1.7299 3.5254 -3.3068 41 1 -0.0013 -1.5923 -6.0871 42 1 -1.4655 -0.5804 -6.1084 43 1 0.0338 0.0077 -6.8664 44 1 1.9893 0.5794 -5.4895 45 1 1.9461 -0.9418 -4.5637 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599380009.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:24 Heat of formation + Delta-G solvation = -199.854887 kcal Electronic energy + Delta-G solvation = -31189.210539 eV Core-core repulsion = 26810.272169 eV Total energy + Delta-G solvation = -4378.938370 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.01007 -47.93340 -39.38928 -38.45447 -37.88097 -36.92794 -34.97751 -34.51793 -33.85357 -30.90426 -28.06862 -27.64028 -27.28463 -26.99255 -25.33721 -22.63259 -22.37458 -21.32076 -19.97880 -19.02777 -18.61758 -18.34741 -18.14200 -17.87682 -17.44234 -17.04465 -16.72488 -16.05003 -15.26728 -15.05899 -14.93180 -14.88110 -14.82384 -14.49230 -14.25081 -14.14661 -14.07206 -13.77555 -13.71989 -13.59729 -13.42362 -13.36401 -13.21271 -13.09076 -12.99067 -12.85935 -12.81785 -12.75798 -12.60093 -12.39926 -12.28654 -12.12132 -12.00995 -11.94260 -11.78974 -11.23033 -11.11624 -10.49682 -10.23207 -9.65434 -8.11193 -6.23944 -0.44451 1.42251 1.44939 1.53076 1.91062 2.41632 2.51450 2.71885 3.02798 3.17426 3.22682 3.26870 3.34602 3.66870 3.75191 4.03596 4.12218 4.19338 4.28638 4.36774 4.40598 4.45660 4.62591 4.69338 4.74066 4.81673 4.82728 4.85746 4.90852 4.91765 5.04627 5.05770 5.14133 5.16642 5.19579 5.21879 5.30489 5.42062 5.63124 5.78822 5.89329 6.15403 6.32043 6.83262 7.44982 8.92538 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016024 B = 0.004541 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.955888 B = 6164.160128 C = 6744.587717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.275 3.725 3 H 0.026 0.974 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.268 1.268 12 N -0.996 5.996 13 C 0.103 3.897 14 S 2.789 3.211 15 O -1.001 7.001 16 O -1.009 7.009 17 N -1.006 6.006 18 C 0.127 3.873 19 C -0.146 4.146 20 H 0.103 0.897 21 C -0.149 4.149 22 C 0.301 3.699 23 F -0.203 7.203 24 F -0.199 7.199 25 C -0.143 4.143 26 H 0.110 0.890 27 C -0.147 4.147 28 C 0.123 3.877 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.264 0.736 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.822 -0.323 -16.521 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.171 3.829 3 H 0.044 0.956 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.210 1.210 10 H -0.205 1.205 11 H -0.192 1.192 12 N -0.837 5.837 13 C -0.043 4.043 14 S 2.800 3.200 15 O -0.985 6.985 16 O -0.993 6.993 17 N -0.845 5.845 18 C 0.001 3.999 19 C -0.167 4.167 20 H 0.122 0.878 21 C -0.207 4.207 22 C 0.265 3.735 23 F -0.184 7.184 24 F -0.180 7.180 25 C -0.164 4.164 26 H 0.128 0.872 27 C -0.205 4.205 28 C -0.002 4.002 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.111 0.889 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.931 -0.150 -16.416 17.141 hybrid contribution -0.110 -0.132 1.189 1.201 sum -5.042 -0.283 -15.227 16.043 Atomic orbital electron populations 1.21939 0.96677 1.00217 1.00514 1.18391 0.92272 0.91275 0.80983 0.95601 1.21647 1.31581 1.12997 0.91557 0.92763 1.25568 0.95225 0.95705 1.01443 1.69952 1.37207 1.23572 1.24299 0.85672 0.77949 0.79229 0.79479 1.20969 1.20477 1.19235 1.57665 1.69939 1.21033 1.35106 1.21356 1.01737 0.80281 1.00893 1.01529 0.73868 0.72387 0.72175 1.93513 1.69661 1.60650 1.74673 1.93543 1.75200 1.57264 1.73343 1.58237 1.66930 1.24819 1.34475 1.21513 0.91812 0.82631 1.03932 1.22566 0.97404 1.00573 0.96132 0.87844 1.21777 1.01817 0.93266 1.03836 1.21015 0.74254 0.92524 0.85697 1.92971 1.31526 1.97305 1.96625 1.92950 1.85230 1.78890 1.60974 1.22552 0.97163 0.93262 1.03379 0.87205 1.21785 1.02468 1.02262 0.93952 1.21682 0.93016 0.98494 0.86994 0.93929 0.91529 0.94353 0.92664 0.94161 0.90276 0.90059 0.88777 0.89320 0.91009 0.90631 0.91125 0.89263 0.91372 0.91421 0.88895 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.61 8.95 71.98 0.64 -4.96 16 2 C 0.28 12.83 2.62 44.24 0.12 12.94 16 3 H 0.03 1.38 6.91 -2.39 -0.02 1.36 16 4 C -0.54 -28.35 8.37 25.60 0.21 -28.13 16 5 H 0.05 2.87 7.65 -2.91 -0.02 2.85 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -49.72 11.32 21.45 0.24 -49.48 16 8 Si 0.95 42.57 29.54 68.60 2.03 44.59 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 N -1.00 -38.58 3.12 -520.46 -1.62 -40.21 16 13 C 0.10 3.29 9.53 127.77 1.22 4.51 16 14 S 2.79 104.13 6.06 -56.49 -0.34 103.79 16 15 O -1.00 -38.55 15.92 -128.00 -2.04 -40.59 16 16 O -1.01 -46.18 15.42 -128.00 -1.97 -48.15 16 17 N -1.01 -28.02 3.35 -513.05 -1.72 -29.73 16 18 C 0.13 3.34 5.45 86.36 0.47 3.81 16 19 C -0.15 -3.44 2.53 -10.72 -0.03 -3.46 16 20 H 0.10 2.62 6.27 -2.39 -0.01 2.61 16 21 C -0.15 -3.10 8.95 71.98 0.64 -2.45 16 22 C 0.30 6.61 1.16 30.62 0.04 6.64 16 23 F -0.20 -4.79 15.93 44.97 0.72 -4.07 16 24 F -0.20 -4.50 15.17 44.97 0.68 -3.82 16 25 C -0.14 -2.72 2.53 -10.72 -0.03 -2.75 16 26 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 27 C -0.15 -2.15 8.95 71.98 0.64 -1.50 16 28 C 0.12 2.62 5.46 86.36 0.47 3.09 16 29 H 0.04 1.67 6.66 -2.39 -0.02 1.65 16 30 H 0.07 3.19 6.07 -2.39 -0.01 3.17 16 31 H 0.04 1.34 6.27 -2.39 -0.01 1.33 16 32 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 33 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.08 2.41 6.43 -2.39 -0.02 2.40 16 35 H 0.08 2.01 7.79 -2.39 -0.02 1.99 16 36 H 0.09 2.16 7.92 -2.38 -0.02 2.14 16 37 H 0.09 2.69 7.13 -2.39 -0.02 2.68 16 38 H 0.07 1.36 7.83 -2.39 -0.02 1.34 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.41 7.78 -2.38 -0.02 1.39 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.01 7.78 -2.39 -0.02 0.99 16 43 H 0.07 0.97 7.84 -2.39 -0.02 0.95 16 44 H 0.09 1.75 7.92 -2.39 -0.02 1.73 16 45 H 0.11 2.17 7.12 -2.39 -0.02 2.16 16 Total: -1.00 -65.01 363.19 1.82 -63.19 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.99 Total: 15.20 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: 4.85 Total: -10.73 kcal Atomic # 7 Polarization: -116.32 SS G_CDS: -3.10 Total: -119.42 kcal Atomic # 8 Polarization: -84.73 SS G_CDS: -4.01 Total: -88.74 kcal Atomic # 9 Polarization: -9.29 SS G_CDS: 1.40 Total: -7.89 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: 104.13 SS G_CDS: -0.34 Total: 103.79 kcal Total: -65.01 1.82 -63.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599380009.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.660 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds