Wall clock time and date at job start Sat Apr 11 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46849 * 2 1 4 4 H 1.09004 * 109.46995 * 304.99340 * 3 2 1 5 5 C 1.53005 * 109.46943 * 185.00051 * 3 2 1 6 6 S 1.81410 * 109.46814 * 179.97438 * 5 3 2 7 7 C 1.81402 * 102.99874 * 179.97438 * 6 5 3 8 8 N 1.46498 * 109.47560 * 64.99580 * 3 2 1 9 9 C 1.46500 * 119.99529 * 60.00284 * 8 3 2 10 10 C 1.34768 * 120.00207 * 240.00231 * 8 3 2 11 11 O 1.21361 * 120.00253 * 3.62770 * 10 8 3 12 12 C 1.49309 * 120.00210 * 183.63113 * 10 8 3 13 13 O 1.21410 * 119.99593 * 354.16373 * 12 10 8 14 14 N 1.34771 * 120.00288 * 173.88951 * 12 10 8 15 15 C 1.40294 * 120.00295 * 179.97438 * 14 12 10 16 16 C 1.40724 * 126.09579 * 359.69281 * 15 14 12 17 17 N 1.30878 * 108.37537 * 179.85225 * 16 15 14 18 18 N 1.40067 * 108.43665 * 0.40448 * 17 16 15 19 19 C 1.37291 * 126.06124 * 179.71708 * 18 17 16 20 20 H 1.07996 * 120.00217 * 180.02562 * 19 18 17 21 21 C 1.39009 * 119.99520 * 0.02562 * 19 18 17 22 22 N 1.31283 * 120.00109 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99793 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47216 * 60.00480 * 23 21 19 25 25 H 1.48508 * 109.47034 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47349 * 300.00281 * 23 21 19 27 27 C 1.35791 * 126.10370 * 180.02562 * 15 14 12 28 28 H 1.08996 * 109.47184 * 300.00372 * 1 2 3 29 29 H 1.09002 * 109.46694 * 60.00612 * 1 2 3 30 30 H 1.09003 * 109.46474 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47643 * 239.99845 * 2 1 3 32 32 H 1.09002 * 109.47208 * 119.99271 * 2 1 3 33 33 H 1.08996 * 109.47188 * 299.99144 * 5 3 2 34 34 H 1.08995 * 109.47382 * 60.00046 * 5 3 2 35 35 H 1.09003 * 109.47062 * 300.00193 * 7 6 5 36 36 H 1.09000 * 109.46955 * 59.99656 * 7 6 5 37 37 H 1.08995 * 109.47296 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.46860 * 263.98979 * 9 8 3 39 39 H 1.08997 * 109.47574 * 23.98763 * 9 8 3 40 40 H 1.09007 * 109.47174 * 143.99498 * 9 8 3 41 41 H 0.97000 * 120.00272 * 0.02562 * 14 12 10 42 42 H 1.07999 * 125.81337 * 359.97438 * 16 15 14 43 43 H 0.97004 * 119.99978 * 179.97438 * 22 21 19 44 44 H 1.07995 * 126.24489 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1257 6 16 4.1693 3.1548 -0.1265 7 6 5.9655 2.9527 -0.2797 8 7 1.6523 2.0976 1.2517 9 6 2.1138 1.5592 2.5336 10 6 0.8712 3.1955 1.2239 11 8 0.4348 3.6032 0.1675 12 6 0.5428 3.9104 2.4930 13 8 0.8898 3.4448 3.5592 14 7 -0.1340 5.0752 2.4545 15 6 -0.4431 5.7467 3.6469 16 6 -0.1163 5.3198 4.9474 17 7 -0.5666 6.2066 5.7981 18 7 -1.2042 7.2259 5.0795 19 6 -1.8110 8.3347 5.6155 20 1 -2.2756 9.0626 4.9669 21 6 -1.8272 8.5205 6.9930 22 7 -1.2619 7.6359 7.7814 23 14 -2.6521 10.0295 7.7223 24 1 -4.0874 10.0415 7.3418 25 1 -2.5320 9.9928 9.2020 26 1 -1.9921 11.2542 7.2028 27 6 -1.1164 6.9212 3.7525 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 3.9995 0.9055 0.7161 34 1 3.8532 0.9571 -1.0571 35 1 6.3398 2.3764 0.5665 36 1 6.1942 2.4270 -1.2068 37 1 6.4419 3.9329 -0.2903 38 1 1.3435 0.9131 2.9548 39 1 3.0261 0.9832 2.3785 40 1 2.3151 2.3805 3.2214 41 1 -0.4081 5.4491 1.6024 42 1 0.4172 4.4154 5.2004 43 1 -1.2729 7.7658 8.7426 44 1 -1.5101 7.5071 2.9352 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785085443.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:31 Heat of formation + Delta-G solvation = 28.583224 kcal Electronic energy + Delta-G solvation = -27400.549992 eV Core-core repulsion = 23482.206628 eV Total energy + Delta-G solvation = -3918.343364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.70673 -39.59573 -38.13657 -36.92888 -34.46984 -33.28140 -32.85539 -30.51149 -30.28509 -29.13938 -28.03542 -26.94748 -25.56445 -24.52690 -23.51302 -21.25354 -20.72226 -19.50523 -19.37865 -17.67135 -17.39184 -16.90303 -16.39630 -16.11837 -15.49101 -15.27958 -14.97232 -14.69098 -14.34609 -14.23572 -14.16540 -13.86898 -13.64936 -13.47812 -13.25861 -13.01922 -12.95739 -12.91776 -12.71297 -12.26319 -12.20092 -11.70658 -11.50287 -11.40867 -11.31874 -11.25058 -11.16169 -10.99180 -10.74173 -10.56316 -10.22904 -10.13722 -9.19953 -8.94460 -8.84818 -8.64642 -8.09803 -7.83492 -6.73699 -6.57951 -4.24925 1.40445 1.74411 2.36318 2.54538 2.96435 3.05126 3.08715 3.37058 3.72581 3.75182 3.90355 4.26306 4.41024 4.59918 4.64266 4.71987 4.84901 4.88345 4.88939 4.99288 5.00628 5.03225 5.14758 5.33994 5.42771 5.45536 5.53048 5.69010 5.72199 5.85170 6.05963 6.12501 6.23429 6.38985 6.39657 6.80289 6.91401 7.01388 7.16666 7.19909 7.76714 7.87256 8.16230 8.22200 8.53934 8.73637 9.34195 9.63037 10.37814 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019984 B = 0.002430 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.797016 B =11519.394529 C =12045.505489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.153 3.847 4 H 0.112 0.888 5 C -0.103 4.103 6 S -0.239 6.239 7 C -0.127 4.127 8 N -0.578 5.578 9 C 0.067 3.933 10 C 0.520 3.480 11 O -0.527 6.527 12 C 0.487 3.513 13 O -0.517 6.517 14 N -0.584 5.584 15 C -0.067 4.067 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.322 4.322 20 H 0.117 0.883 21 C 0.047 3.953 22 N -0.768 5.768 23 Si 0.935 3.065 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.078 4.078 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.115 0.885 41 H 0.408 0.592 42 H 0.178 0.822 43 H 0.276 0.724 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.257 -13.242 -14.814 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.048 3.952 4 H 0.130 0.870 5 C -0.252 4.252 6 S -0.013 6.013 7 C -0.296 4.296 8 N -0.312 5.312 9 C -0.075 4.075 10 C 0.303 3.697 11 O -0.403 6.403 12 C 0.268 3.732 13 O -0.395 6.395 14 N -0.226 5.226 15 C -0.173 4.173 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.094 4.906 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.395 5.395 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.229 4.229 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.133 0.867 41 H 0.243 0.757 42 H 0.195 0.805 43 H 0.087 0.913 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.667 -12.124 -13.054 19.812 hybrid contribution 0.444 -0.586 -1.145 1.361 sum 9.111 -12.709 -14.199 21.122 Atomic orbital electron populations 1.21708 0.94668 1.01645 1.02666 1.21851 0.97251 0.94649 1.02816 1.20934 0.91098 0.94513 0.88656 0.86994 1.23917 0.99243 0.96696 1.05316 1.87479 1.05149 1.11333 1.97306 1.23396 0.95295 1.06427 1.04470 1.47539 1.49099 1.26901 1.07639 1.22374 0.98708 1.01938 0.84467 1.20214 0.79046 0.80834 0.89616 1.90709 1.51906 1.65746 1.31986 1.19603 0.81805 0.82668 0.89079 1.90542 1.52207 1.66061 1.30714 1.42158 1.51499 1.20176 1.08747 1.17249 1.16319 0.98170 0.85544 1.24138 1.05670 1.01483 0.88940 1.78254 1.15851 0.97555 1.17493 1.44542 1.30181 1.13915 1.01931 1.19865 1.35215 0.98361 0.91996 0.86529 1.25654 0.96386 0.98897 0.96149 1.70199 1.32748 1.31635 1.04882 0.85882 0.79721 0.80209 0.78278 1.19111 1.20117 1.19114 1.21307 1.13131 1.00035 0.88429 0.92424 0.92370 0.92485 0.90620 0.91150 0.89548 0.88958 0.90608 0.90750 0.88070 0.92367 0.92398 0.86726 0.75676 0.80544 0.91346 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.80 37.16 0.36 -0.99 16 2 C -0.13 -0.97 5.36 -26.73 -0.14 -1.11 16 3 C 0.15 1.52 2.07 -67.93 -0.14 1.38 16 4 H 0.11 1.33 6.91 -51.93 -0.36 0.97 16 5 C -0.10 -0.86 5.30 37.16 0.20 -0.66 16 6 S -0.24 -2.68 21.96 -107.50 -2.36 -5.04 16 7 C -0.13 -0.96 10.76 101.05 1.09 0.13 16 8 N -0.58 -7.25 1.75 -174.49 -0.31 -7.56 16 9 C 0.07 0.77 8.48 59.85 0.51 1.28 16 10 C 0.52 8.23 7.73 -11.66 -0.09 8.14 16 11 O -0.53 -9.02 15.82 5.49 0.09 -8.94 16 12 C 0.49 8.97 7.74 -11.65 -0.09 8.88 16 13 O -0.52 -10.17 10.28 5.44 0.06 -10.12 16 14 N -0.58 -11.28 5.45 -10.45 -0.06 -11.34 16 15 C -0.07 -1.56 6.90 -83.92 -0.58 -2.14 16 16 C -0.03 -0.69 10.85 -17.02 -0.18 -0.87 16 17 N -0.26 -7.48 10.39 30.81 0.32 -7.16 16 18 N -0.14 -3.80 3.73 -11.40 -0.04 -3.84 16 19 C -0.32 -8.48 10.25 -14.82 -0.15 -8.63 16 20 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -21.24 11.81 55.50 0.66 -20.58 16 23 Si 0.94 18.80 29.55 -169.99 -5.02 13.77 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 27 C -0.08 -1.85 11.50 -16.38 -0.19 -2.03 16 28 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.50 7.51 -51.93 -0.39 0.11 16 33 H 0.09 0.64 6.67 -51.93 -0.35 0.29 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.07 0.45 8.14 -51.92 -0.42 0.03 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.51 6.44 -51.93 -0.33 0.18 16 40 H 0.11 1.64 5.35 -51.93 -0.28 1.36 16 41 H 0.41 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.18 4.39 5.92 -52.49 -0.31 4.08 16 43 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.15 2.97 8.06 -52.49 -0.42 2.54 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -32.38 378.48 -6.59 -38.97 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.11 Total: 11.64 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 0.49 Total: 4.49 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: 0.57 Total: -50.48 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.14 Total: -19.05 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 16 Polarization: -2.68 SS G_CDS: -2.36 Total: -5.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.38 -6.59 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785085443.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.553 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds