Wall clock time and date at job start Sat Apr 11 2020 05:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.46663 * 2 1 4 4 H 1.08999 * 109.47307 * 55.00042 * 3 2 1 5 5 C 1.52999 * 109.46886 * 175.00043 * 3 2 1 6 6 S 1.81392 * 109.47192 * 184.99949 * 5 3 2 7 7 C 1.81403 * 103.00158 * 179.97438 * 6 5 3 8 8 N 1.46502 * 109.46749 * 294.99704 * 3 2 1 9 9 C 1.46494 * 120.00117 * 299.99791 * 8 3 2 10 10 C 1.34775 * 119.99660 * 120.00744 * 8 3 2 11 11 O 1.21364 * 120.00433 * 5.34667 * 10 8 3 12 12 C 1.49315 * 119.99659 * 185.34708 * 10 8 3 13 13 O 1.21404 * 119.99915 * 5.98152 * 12 10 8 14 14 N 1.34779 * 119.99734 * 185.97491 * 12 10 8 15 15 C 1.40295 * 120.00003 * 180.02562 * 14 12 10 16 16 C 1.40720 * 126.09600 * 359.69190 * 15 14 12 17 17 N 1.30881 * 108.37319 * 179.85380 * 16 15 14 18 18 N 1.40058 * 108.43383 * 0.40510 * 17 16 15 19 19 C 1.37293 * 126.05604 * 179.74267 * 18 17 16 20 20 H 1.08000 * 120.00703 * 180.02562 * 19 18 17 21 21 C 1.39016 * 119.99788 * 359.97438 * 19 18 17 22 22 N 1.31279 * 119.99812 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00064 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47129 * 60.00143 * 23 21 19 25 25 H 1.48498 * 109.47328 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47182 * 300.00719 * 23 21 19 27 27 C 1.35781 * 126.10074 * 179.97438 * 15 14 12 28 28 H 1.09005 * 109.47081 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47454 * 60.00475 * 1 2 3 30 30 H 1.09005 * 109.47494 * 300.00144 * 1 2 3 31 31 H 1.08997 * 109.47041 * 119.99199 * 2 1 3 32 32 H 1.08997 * 109.47190 * 239.99982 * 2 1 3 33 33 H 1.09001 * 109.46788 * 305.00086 * 5 3 2 34 34 H 1.08998 * 109.47417 * 64.99515 * 5 3 2 35 35 H 1.08999 * 109.46893 * 59.99757 * 7 6 5 36 36 H 1.09001 * 109.46819 * 179.97438 * 7 6 5 37 37 H 1.08992 * 109.46865 * 299.99928 * 7 6 5 38 38 H 1.09006 * 109.47066 * 95.25563 * 9 8 3 39 39 H 1.09001 * 109.47397 * 215.25620 * 9 8 3 40 40 H 1.08998 * 109.47724 * 335.26035 * 9 8 3 41 41 H 0.97003 * 120.00045 * 359.97438 * 14 12 10 42 42 H 1.07999 * 125.81402 * 359.97438 * 16 15 14 43 43 H 0.97005 * 119.99726 * 180.02562 * 22 21 19 44 44 H 1.07997 * 126.24922 * 359.94577 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9817 0.8418 5 6 3.5647 1.4445 0.1257 6 16 4.1570 3.1525 0.2744 7 6 5.9546 2.9506 0.4114 8 7 1.6523 2.0975 -1.2519 9 6 2.1138 1.5590 -2.5337 10 6 0.8712 3.1955 -1.2242 11 8 0.5688 3.6986 -0.1620 12 6 0.3779 3.7930 -2.5006 13 8 0.5884 3.2303 -3.5555 14 7 -0.3014 4.9570 -2.4814 15 6 -0.7654 5.5182 -3.6806 16 6 -0.5898 4.9816 -4.9696 17 7 -1.1625 5.7829 -5.8315 18 7 -1.7160 6.8628 -5.1323 19 6 -2.3968 7.9195 -5.6845 20 1 -2.7838 8.7034 -5.0504 21 6 -2.5871 7.9809 -7.0603 22 7 -2.1162 7.0284 -7.8312 23 14 -3.5127 9.4189 -7.8118 24 1 -2.8059 10.6848 -7.4905 25 1 -3.5782 9.2495 -9.2856 26 1 -4.8892 9.4660 -7.2567 27 6 -1.4593 6.6786 -3.8050 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.8569 0.8802 1.0113 34 1 4.0029 0.9837 -0.7596 35 1 6.3332 2.4520 -0.4808 36 1 6.4239 3.9298 0.5069 37 1 6.1866 2.3488 1.2900 38 1 1.3490 0.9023 -2.9484 39 1 2.3024 2.3796 -3.2259 40 1 3.0335 0.9942 -2.3807 41 1 -0.4700 5.4063 -1.6384 42 1 -0.0725 4.0638 -5.2069 43 1 -2.2487 7.0714 -8.7912 44 1 -1.7544 7.3356 -3.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000785085444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:33 Heat of formation + Delta-G solvation = 25.701833 kcal Electronic energy + Delta-G solvation = -27365.710481 eV Core-core repulsion = 23447.242170 eV Total energy + Delta-G solvation = -3918.468310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69983 -39.59962 -38.13185 -36.93432 -34.45423 -33.28312 -32.87067 -30.51999 -30.28636 -29.15328 -28.03173 -26.98074 -25.56558 -24.52838 -23.51849 -21.24808 -20.72476 -19.51339 -19.34993 -17.67860 -17.41346 -16.89867 -16.43680 -16.06964 -15.49383 -15.28617 -14.98776 -14.70083 -14.34277 -14.22972 -14.16722 -13.87188 -13.62385 -13.50696 -13.23007 -13.02933 -12.95837 -12.89848 -12.73959 -12.25722 -12.20514 -11.70953 -11.50568 -11.43400 -11.31968 -11.24915 -11.18497 -11.02738 -10.76411 -10.56526 -10.22240 -10.13286 -9.19989 -8.91400 -8.81527 -8.78679 -8.10045 -7.84413 -6.73835 -6.58174 -4.25131 1.40470 1.73986 2.35953 2.53337 2.96232 3.04968 3.08589 3.36662 3.71638 3.74986 3.89515 4.26009 4.40750 4.60606 4.64812 4.69804 4.83865 4.87599 4.88068 4.97270 5.00425 5.03870 5.14301 5.31025 5.41458 5.45232 5.52330 5.68775 5.70835 5.85093 6.02209 6.08896 6.23172 6.37449 6.39534 6.80211 6.91198 6.97727 7.15841 7.19501 7.76348 7.86936 8.15983 8.21900 8.53545 8.73377 9.34005 9.62850 10.37606 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.002382 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.157007 B =11750.830354 C =12243.763277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.153 3.847 4 H 0.112 0.888 5 C -0.103 4.103 6 S -0.237 6.237 7 C -0.128 4.128 8 N -0.581 5.581 9 C 0.080 3.920 10 C 0.519 3.481 11 O -0.524 6.524 12 C 0.486 3.514 13 O -0.518 6.518 14 N -0.584 5.584 15 C -0.067 4.067 16 C -0.027 4.027 17 N -0.261 5.261 18 N -0.139 5.139 19 C -0.322 4.322 20 H 0.117 0.883 21 C 0.047 3.953 22 N -0.768 5.768 23 Si 0.936 3.064 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.266 1.266 27 C -0.078 4.078 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.408 0.592 42 H 0.178 0.822 43 H 0.276 0.724 44 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.961 -12.121 14.901 22.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.049 3.951 4 H 0.130 0.870 5 C -0.252 4.252 6 S -0.011 6.011 7 C -0.297 4.297 8 N -0.315 5.315 9 C -0.062 4.062 10 C 0.302 3.698 11 O -0.400 6.400 12 C 0.267 3.733 13 O -0.396 6.396 14 N -0.227 5.227 15 C -0.173 4.173 16 C -0.203 4.203 17 N -0.092 5.092 18 N 0.094 4.906 19 C -0.454 4.454 20 H 0.135 0.865 21 C -0.171 4.171 22 N -0.395 5.395 23 Si 0.759 3.241 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.191 1.191 27 C -0.229 4.229 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.243 0.757 42 H 0.194 0.806 43 H 0.087 0.913 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 10.145 -11.160 13.233 20.064 hybrid contribution 0.573 -0.463 1.007 1.248 sum 10.718 -11.623 14.240 21.278 Atomic orbital electron populations 1.21722 0.94678 1.01781 1.02635 1.21859 0.97246 0.94621 1.02868 1.20929 0.91205 0.94421 0.88564 0.86961 1.23913 0.99317 0.96688 1.05288 1.87515 1.05039 1.11670 1.96885 1.23401 0.95442 1.06363 1.04510 1.47531 1.49049 1.27284 1.07596 1.22104 0.98749 1.01275 0.84037 1.20258 0.79041 0.80676 0.89796 1.90716 1.57127 1.60339 1.31826 1.19605 0.82029 0.82680 0.89007 1.90611 1.56587 1.60864 1.31514 1.42162 1.50767 1.20745 1.09007 1.17246 1.14993 0.99421 0.85593 1.24136 1.05154 1.01982 0.88999 1.78253 1.16554 0.96559 1.17795 1.44538 1.29990 1.13876 1.02158 1.19867 1.33752 0.99668 0.92154 0.86527 1.25656 0.96780 0.98429 0.96229 1.70199 1.34535 1.29245 1.05492 0.85880 0.79788 0.80119 0.78297 1.19111 1.20118 1.19107 1.21306 1.12304 1.00850 0.88461 0.92394 0.92338 0.92439 0.90573 0.91098 0.88957 0.89511 0.90646 0.88106 0.90749 0.91936 0.88303 0.92339 0.75675 0.80559 0.91346 0.83409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.80 37.16 0.36 -1.01 16 2 C -0.13 -0.96 5.36 -26.73 -0.14 -1.11 16 3 C 0.15 1.52 2.02 -67.92 -0.14 1.38 16 4 H 0.11 1.33 6.91 -51.93 -0.36 0.97 16 5 C -0.10 -0.85 5.35 37.16 0.20 -0.65 16 6 S -0.24 -2.62 22.11 -107.50 -2.38 -5.00 16 7 C -0.13 -0.94 10.76 101.05 1.09 0.15 16 8 N -0.58 -7.23 1.92 -174.49 -0.34 -7.56 16 9 C 0.08 0.92 8.16 59.84 0.49 1.41 16 10 C 0.52 8.19 7.72 -11.65 -0.09 8.10 16 11 O -0.52 -8.96 15.83 5.49 0.09 -8.88 16 12 C 0.49 8.92 7.67 -11.65 -0.09 8.83 16 13 O -0.52 -10.19 10.52 5.45 0.06 -10.14 16 14 N -0.58 -11.28 5.45 -10.45 -0.06 -11.34 16 15 C -0.07 -1.55 6.90 -83.93 -0.58 -2.13 16 16 C -0.03 -0.70 10.85 -17.02 -0.18 -0.88 16 17 N -0.26 -7.49 10.39 30.81 0.32 -7.17 16 18 N -0.14 -3.79 3.73 -11.40 -0.04 -3.84 16 19 C -0.32 -8.48 10.25 -14.82 -0.15 -8.63 16 20 H 0.12 2.74 7.83 -52.49 -0.41 2.32 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -21.25 11.81 55.50 0.66 -20.59 16 23 Si 0.94 18.80 29.55 -169.99 -5.02 13.77 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 25 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 27 C -0.08 -1.85 11.50 -16.38 -0.19 -2.04 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.66 7.75 -51.93 -0.40 0.26 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.50 7.51 -51.93 -0.39 0.11 16 33 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.09 0.64 6.50 -51.92 -0.34 0.30 16 35 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.72 8.11 -51.93 -0.42 0.30 16 39 H 0.10 1.37 5.95 -51.93 -0.31 1.06 16 40 H 0.06 0.50 6.36 -51.93 -0.33 0.17 16 41 H 0.41 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.18 4.39 5.92 -52.49 -0.31 4.08 16 43 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.15 2.97 8.06 -52.49 -0.42 2.55 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -32.49 378.96 -6.65 -39.15 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.13 Total: 11.35 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 0.48 Total: 4.52 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: 0.54 Total: -50.49 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.14 Total: -19.01 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.02 Total: 13.77 kcal Atomic # 16 Polarization: -2.62 SS G_CDS: -2.38 Total: -5.00 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.49 -6.65 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785085444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.848 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds