Wall clock time and date at job start Sat Apr 11 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53010 * 109.46663 * 2 1 4 4 H 1.08999 * 109.47307 * 55.00042 * 3 2 1 5 5 C 1.52999 * 109.46886 * 175.00043 * 3 2 1 6 6 S 1.81392 * 109.47192 * 184.99949 * 5 3 2 7 7 C 1.81403 * 103.00158 * 179.97438 * 6 5 3 8 8 N 1.46502 * 109.46749 * 294.99704 * 3 2 1 9 9 C 1.46494 * 120.00117 * 299.99791 * 8 3 2 10 10 C 1.34775 * 119.99660 * 120.00744 * 8 3 2 11 11 O 1.21364 * 120.00433 * 5.34667 * 10 8 3 12 12 C 1.49315 * 119.99659 * 185.34708 * 10 8 3 13 13 O 1.21404 * 119.99915 * 5.98152 * 12 10 8 14 14 N 1.34779 * 119.99734 * 185.97491 * 12 10 8 15 15 C 1.40295 * 120.00003 * 180.02562 * 14 12 10 16 16 C 1.40720 * 126.09600 * 359.69190 * 15 14 12 17 17 N 1.30881 * 108.37319 * 179.85380 * 16 15 14 18 18 N 1.40058 * 108.43383 * 0.40510 * 17 16 15 19 19 C 1.37293 * 126.05604 * 179.74267 * 18 17 16 20 20 H 1.08000 * 120.00703 * 180.02562 * 19 18 17 21 21 C 1.39016 * 119.99788 * 359.97438 * 19 18 17 22 22 N 1.31279 * 119.99812 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00064 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47129 * 60.00143 * 23 21 19 25 25 H 1.48498 * 109.47328 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47182 * 300.00719 * 23 21 19 27 27 C 1.35781 * 126.10074 * 179.97438 * 15 14 12 28 28 H 1.09005 * 109.47081 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47454 * 60.00475 * 1 2 3 30 30 H 1.09005 * 109.47494 * 300.00144 * 1 2 3 31 31 H 1.08997 * 109.47041 * 119.99199 * 2 1 3 32 32 H 1.08997 * 109.47190 * 239.99982 * 2 1 3 33 33 H 1.09001 * 109.46788 * 305.00086 * 5 3 2 34 34 H 1.08998 * 109.47417 * 64.99515 * 5 3 2 35 35 H 1.08999 * 109.46893 * 59.99757 * 7 6 5 36 36 H 1.09001 * 109.46819 * 179.97438 * 7 6 5 37 37 H 1.08992 * 109.46865 * 299.99928 * 7 6 5 38 38 H 1.09006 * 109.47066 * 95.25563 * 9 8 3 39 39 H 1.09001 * 109.47397 * 215.25620 * 9 8 3 40 40 H 1.08998 * 109.47724 * 335.26035 * 9 8 3 41 41 H 0.97003 * 120.00045 * 359.97438 * 14 12 10 42 42 H 1.07999 * 125.81402 * 359.97438 * 16 15 14 43 43 H 0.97005 * 119.99726 * 180.02562 * 22 21 19 44 44 H 1.07997 * 126.24922 * 359.94577 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9817 0.8418 5 6 3.5647 1.4445 0.1257 6 16 4.1570 3.1525 0.2744 7 6 5.9546 2.9506 0.4114 8 7 1.6523 2.0975 -1.2519 9 6 2.1138 1.5590 -2.5337 10 6 0.8712 3.1955 -1.2242 11 8 0.5688 3.6986 -0.1620 12 6 0.3779 3.7930 -2.5006 13 8 0.5884 3.2303 -3.5555 14 7 -0.3014 4.9570 -2.4814 15 6 -0.7654 5.5182 -3.6806 16 6 -0.5898 4.9816 -4.9696 17 7 -1.1625 5.7829 -5.8315 18 7 -1.7160 6.8628 -5.1323 19 6 -2.3968 7.9195 -5.6845 20 1 -2.7838 8.7034 -5.0504 21 6 -2.5871 7.9809 -7.0603 22 7 -2.1162 7.0284 -7.8312 23 14 -3.5127 9.4189 -7.8118 24 1 -2.8059 10.6848 -7.4905 25 1 -3.5782 9.2495 -9.2856 26 1 -4.8892 9.4660 -7.2567 27 6 -1.4593 6.6786 -3.8050 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.8569 0.8802 1.0113 34 1 4.0029 0.9837 -0.7596 35 1 6.3332 2.4520 -0.4808 36 1 6.4239 3.9298 0.5069 37 1 6.1866 2.3488 1.2900 38 1 1.3490 0.9023 -2.9484 39 1 2.3024 2.3796 -3.2259 40 1 3.0335 0.9942 -2.3807 41 1 -0.4700 5.4063 -1.6384 42 1 -0.0725 4.0638 -5.2069 43 1 -2.2487 7.0714 -8.7912 44 1 -1.7544 7.3356 -3.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000785085444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:32 Heat of formation + Delta-G solvation = 4.900747 kcal Electronic energy + Delta-G solvation = -27366.612483 eV Core-core repulsion = 23447.242170 eV Total energy + Delta-G solvation = -3919.370313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.12540 -41.31494 -39.59353 -38.04553 -36.09044 -35.02887 -33.94080 -32.28317 -31.23138 -29.88908 -29.71746 -28.02801 -27.22195 -25.87741 -24.51735 -22.95539 -22.12284 -21.26903 -20.54108 -19.39235 -18.76480 -18.14455 -17.44202 -17.35915 -17.16020 -16.81775 -16.36167 -15.91491 -15.63244 -15.27639 -15.19103 -14.99220 -14.92447 -14.82056 -14.41795 -14.37633 -13.93830 -13.70369 -13.58352 -13.50516 -13.47195 -13.18684 -12.93948 -12.88652 -12.81381 -12.33249 -12.21348 -12.12891 -12.03773 -11.88301 -11.76020 -11.03934 -10.86296 -10.84588 -10.29646 -10.12910 -9.83283 -8.66909 -8.59994 -8.48230 -6.25638 0.34296 0.72780 1.28634 1.31284 1.41802 1.57069 1.71279 1.73834 2.06659 2.11908 2.47672 2.55790 2.86751 3.08044 3.42833 3.57969 3.96425 3.99428 4.16545 4.28031 4.34470 4.35447 4.40096 4.47563 4.53070 4.56048 4.66891 4.77067 4.85185 4.88789 4.96752 4.98827 5.01353 5.04365 5.15855 5.24891 5.32381 5.34843 5.46528 5.90887 5.96687 6.22882 6.43291 6.67893 6.79810 7.10267 7.41806 7.63916 8.50818 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020703 B = 0.002382 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.157007 B =11750.830354 C =12243.763277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.150 3.850 4 H 0.093 0.907 5 C -0.082 4.082 6 S -0.328 6.328 7 C -0.108 4.108 8 N -0.567 5.567 9 C 0.081 3.919 10 C 0.522 3.478 11 O -0.541 6.541 12 C 0.485 3.515 13 O -0.530 6.530 14 N -0.587 5.587 15 C -0.053 4.053 16 C -0.047 4.047 17 N -0.307 5.307 18 N -0.163 5.163 19 C -0.354 4.354 20 H 0.140 0.860 21 C -0.004 4.004 22 N -0.820 5.820 23 Si 1.019 2.981 24 H -0.254 1.254 25 H -0.276 1.276 26 H -0.254 1.254 27 C -0.078 4.078 28 H 0.073 0.927 29 H 0.030 0.970 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.420 0.580 42 H 0.178 0.822 43 H 0.278 0.722 44 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.916 -13.072 16.636 24.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C 0.047 3.953 4 H 0.111 0.889 5 C -0.230 4.230 6 S -0.103 6.103 7 C -0.276 4.276 8 N -0.299 5.299 9 C -0.061 4.061 10 C 0.304 3.696 11 O -0.419 6.419 12 C 0.267 3.733 13 O -0.408 6.408 14 N -0.231 5.231 15 C -0.160 4.160 16 C -0.222 4.222 17 N -0.139 5.139 18 N 0.069 4.931 19 C -0.486 4.486 20 H 0.157 0.843 21 C -0.217 4.217 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.178 1.178 25 H -0.201 1.201 26 H -0.178 1.178 27 C -0.229 4.229 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.257 0.743 42 H 0.194 0.806 43 H 0.088 0.912 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 11.134 -12.154 15.014 22.296 hybrid contribution 0.405 -0.334 0.610 0.804 sum 11.539 -12.488 15.624 23.091 Atomic orbital electron populations 1.21725 0.96053 1.02279 1.00850 1.21867 0.95897 0.92947 1.05032 1.21181 0.92631 0.95281 0.86257 0.88936 1.23883 0.97381 0.94374 1.07408 1.87867 1.09607 1.15625 1.97195 1.23382 0.91439 1.06914 1.05864 1.47617 1.47216 1.25882 1.09202 1.22111 1.00407 1.00515 0.83069 1.19701 0.79984 0.81747 0.88142 1.90712 1.58291 1.61212 1.31658 1.20270 0.80910 0.82055 0.90069 1.90608 1.56537 1.61090 1.32602 1.42130 1.51413 1.21407 1.08193 1.17290 1.13637 0.98887 0.86154 1.24247 1.05716 1.02123 0.90119 1.78146 1.18105 0.97918 1.19686 1.44813 1.30984 1.14112 1.03189 1.20604 1.34369 1.00241 0.93342 0.84256 1.26875 0.97137 1.01316 0.96329 1.70370 1.36637 1.31928 1.05868 0.84650 0.78535 0.76094 0.76928 1.17811 1.20098 1.17789 1.21972 1.11305 1.01288 0.88344 0.90764 0.95096 0.93265 0.87535 0.89668 0.86033 0.87880 0.89579 0.88107 0.88894 0.91875 0.90949 0.88616 0.74304 0.80568 0.91223 0.79812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.80 71.98 0.71 -1.79 16 2 C -0.12 -1.40 5.36 30.60 0.16 -1.24 16 3 C 0.15 2.64 2.02 44.99 0.09 2.73 16 4 H 0.09 2.08 6.91 -2.39 -0.02 2.07 16 5 C -0.08 -1.09 5.35 71.98 0.38 -0.71 16 6 S -0.33 -6.83 22.11 -56.49 -1.25 -8.08 16 7 C -0.11 -1.32 10.76 113.37 1.22 -0.10 16 8 N -0.57 -13.50 1.92 -824.32 -1.58 -15.08 16 9 C 0.08 1.73 8.16 127.77 1.04 2.77 16 10 C 0.52 16.49 7.72 87.23 0.67 17.16 16 11 O -0.54 -18.57 15.83 -3.29 -0.05 -18.62 16 12 C 0.48 18.11 7.67 87.23 0.67 18.77 16 13 O -0.53 -21.42 10.52 -3.42 -0.04 -21.45 16 14 N -0.59 -22.91 5.45 -305.32 -1.66 -24.57 16 15 C -0.05 -2.53 6.90 37.82 0.26 -2.27 16 16 C -0.05 -2.51 10.85 85.44 0.93 -1.58 16 17 N -0.31 -18.36 10.39 -56.43 -0.59 -18.95 16 18 N -0.16 -9.12 3.73 -189.98 -0.71 -9.83 16 19 C -0.35 -18.87 10.25 84.02 0.86 -18.01 16 20 H 0.14 6.46 7.83 -2.91 -0.02 6.43 16 21 C 0.00 -0.23 5.50 84.96 0.47 0.24 16 22 N -0.82 -46.97 11.81 21.67 0.26 -46.72 16 23 Si 1.02 38.53 29.55 68.60 2.03 40.55 16 24 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 25 H -0.28 -10.28 7.11 99.48 0.71 -9.58 16 26 H -0.25 -9.00 7.11 99.48 0.71 -8.30 16 27 C -0.08 -3.75 11.50 83.41 0.96 -2.79 16 28 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.03 0.67 7.75 -2.39 -0.02 0.65 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.83 7.51 -2.39 -0.02 0.81 16 33 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.10 1.06 6.50 -2.39 -0.02 1.05 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 1.38 8.11 -2.38 -0.02 1.36 16 39 H 0.07 2.00 5.95 -2.39 -0.01 1.99 16 40 H 0.10 1.34 6.36 -2.39 -0.02 1.32 16 41 H 0.42 14.29 8.31 -92.71 -0.77 13.52 16 42 H 0.18 9.22 5.92 -2.91 -0.02 9.20 16 43 H 0.28 14.61 8.31 -92.70 -0.77 13.84 16 44 H 0.18 7.16 8.06 -2.91 -0.02 7.14 16 Total: -1.00 -75.15 378.96 5.09 -70.06 By element: Atomic # 1 Polarization: 39.23 SS G_CDS: 0.26 Total: 39.50 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 8.42 Total: 13.19 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -4.29 Total: -115.15 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -0.09 Total: -40.07 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.55 kcal Atomic # 16 Polarization: -6.83 SS G_CDS: -1.25 Total: -8.08 kcal Total: -75.15 5.09 -70.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000785085444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.958 kcal (2) G-P(sol) polarization free energy of solvation -75.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds