Wall clock time and date at job start Sat Apr 11 2020 05:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99692 * 2 1 4 4 O 1.20822 * 119.99951 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99688 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.35743 * 27.33312 * 5 3 2 7 7 C 1.54598 * 110.31058 * 149.47703 * 5 3 2 8 8 C 1.54934 * 102.92561 * 140.87034 * 7 5 3 9 9 N 1.48532 * 103.22693 * 322.58729 * 8 7 5 10 10 C 1.46894 * 111.00012 * 159.72238 * 9 8 7 11 11 N 1.46497 * 109.47710 * 69.87621 * 10 9 8 12 12 N 1.40161 * 126.14869 * 90.01801 * 11 10 9 13 13 C 1.32246 * 107.75848 * 179.97438 * 12 11 10 14 14 C 1.40111 * 125.92639 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00157 * 190.65869 * 14 13 12 16 16 C 1.40041 * 120.00153 * 10.65878 * 14 13 12 17 17 N 1.30793 * 120.00079 * 205.65187 * 16 14 13 18 18 Si 1.86801 * 119.99836 * 25.65228 * 16 14 13 19 19 H 1.48498 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47508 * 120.00166 * 18 16 14 21 21 H 1.48506 * 109.47053 * 240.00093 * 18 16 14 22 22 N 1.38494 * 108.14565 * 0.26350 * 13 12 11 23 23 C 1.46500 * 125.83824 * 179.70140 * 22 13 12 24 24 C 1.34735 * 108.33419 * 359.56521 * 22 13 12 25 25 S 1.71195 * 125.97905 * 180.15706 * 24 22 13 26 26 C 1.47901 * 105.81911 * 39.20348 * 9 8 7 27 27 H 1.08999 * 109.91631 * 94.02913 * 26 9 8 28 28 C 1.52999 * 109.91874 * 215.31621 * 26 9 8 29 29 H 1.09003 * 109.46921 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47009 * 299.98984 * 1 2 3 31 31 H 1.09000 * 109.47807 * 59.99749 * 1 2 3 32 32 H 1.09007 * 110.72001 * 22.50851 * 7 5 3 33 33 H 1.09000 * 110.72485 * 259.23137 * 7 5 3 34 34 H 1.09002 * 110.66727 * 204.15487 * 8 7 5 35 35 H 1.08995 * 110.66756 * 81.02198 * 8 7 5 36 36 H 1.08997 * 109.47058 * 309.86956 * 10 9 8 37 37 H 1.09008 * 109.47127 * 189.87396 * 10 9 8 38 38 H 0.96999 * 120.00240 * 5.08488 * 17 16 14 39 39 H 1.08996 * 109.47245 * 89.99921 * 23 22 13 40 40 H 1.09000 * 109.47678 * 210.00482 * 23 22 13 41 41 H 1.09009 * 109.46786 * 330.00060 * 23 22 13 42 42 H 1.08997 * 109.47432 * 54.86571 * 28 26 9 43 43 H 1.09001 * 109.47516 * 174.86893 * 28 26 9 44 44 H 1.09009 * 109.47200 * 294.86943 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9922 0.3883 -0.4702 7 6 4.0365 2.5504 -0.7369 8 6 5.2324 3.0272 0.1251 9 7 4.7939 2.7246 1.5116 10 6 5.9433 2.6536 2.4235 11 7 6.5055 3.9940 2.6061 12 7 6.1339 4.9193 3.5912 13 6 6.8697 6.0051 3.4228 14 6 6.8095 7.1681 4.2020 15 1 7.3264 8.0604 3.8812 16 6 6.0789 7.1733 5.3967 17 7 5.5949 8.2957 5.8623 18 14 5.7959 5.5775 6.3254 19 1 6.4412 4.4579 5.5938 20 1 6.3835 5.6849 7.6850 21 1 4.3374 5.3208 6.4355 22 7 7.7065 5.7954 2.3393 23 6 8.6807 6.7529 1.8099 24 6 7.4736 4.5590 1.8571 25 16 8.2636 3.8349 0.5220 26 6 4.0942 1.4236 1.4383 27 1 4.7893 0.6149 1.6643 28 6 2.9265 1.4034 2.4267 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3635 0.5138 -0.8899 32 1 3.2466 3.3015 -0.7499 33 1 4.3615 2.3133 -1.7499 34 1 5.3956 4.0974 -0.0018 35 1 6.1337 2.4673 -0.1242 36 1 6.7025 1.9957 2.0006 37 1 5.6188 2.2614 3.3874 38 1 5.6777 9.1115 5.3443 39 1 9.6399 6.6077 2.3068 40 1 8.7994 6.5954 0.7379 41 1 8.3276 7.7682 1.9910 42 1 2.2746 2.2560 2.2365 43 1 2.3615 0.4795 2.3029 44 1 3.3113 1.4603 3.4450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794646058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:39 Heat of formation + Delta-G solvation = 2.296534 kcal Electronic energy + Delta-G solvation = -28475.031828 eV Core-core repulsion = 24555.548588 eV Total energy + Delta-G solvation = -3919.483240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24298 -40.93867 -38.81417 -36.52931 -34.94405 -34.11573 -32.40523 -31.46074 -30.86319 -28.40823 -27.43410 -26.54189 -25.96235 -24.34587 -22.68949 -22.09270 -20.93671 -20.56730 -19.73731 -18.52668 -17.78623 -17.27207 -16.66423 -16.59750 -16.20412 -15.71094 -15.36881 -15.01718 -14.58896 -14.29488 -13.99811 -13.85379 -13.68796 -13.41490 -13.04413 -12.95044 -12.66392 -12.48553 -12.24847 -12.14838 -12.10885 -12.00870 -11.39609 -11.33944 -11.26794 -11.13033 -11.04783 -10.89958 -10.76746 -10.71809 -10.42362 -10.33052 -9.89700 -9.54008 -9.15526 -8.86651 -8.41201 -7.78130 -7.01210 -6.84325 -5.31691 2.02862 2.11853 2.31561 2.54569 2.89314 3.08900 3.23238 3.42628 3.62619 3.78161 3.98816 4.09335 4.36479 4.39481 4.62639 4.70402 4.89803 4.96053 4.97889 5.03116 5.19435 5.23015 5.30957 5.35041 5.38437 5.48845 5.60519 5.72031 5.73367 5.83223 5.87905 5.94847 6.01341 6.18268 6.18824 6.30487 6.33980 6.35277 6.71735 6.86985 6.96614 7.11035 7.35601 7.64808 7.65910 7.90136 8.13352 8.74601 9.61546 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012577 B = 0.003923 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.784033 B = 7136.446847 C = 8573.836195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.362 6.362 3 C 0.476 3.524 4 O -0.496 6.496 5 C -0.088 4.088 6 H 0.109 0.891 7 C -0.115 4.115 8 C 0.042 3.958 9 N -0.524 5.524 10 C 0.315 3.685 11 N -0.360 5.360 12 N -0.411 5.411 13 C 0.373 3.627 14 C -0.495 4.495 15 H 0.096 0.904 16 C 0.076 3.924 17 N -0.779 5.779 18 Si 1.063 2.937 19 H -0.233 1.233 20 H -0.292 1.292 21 H -0.274 1.274 22 N -0.513 5.513 23 C 0.101 3.899 24 C 0.474 3.526 25 S -0.700 6.700 26 C 0.089 3.911 27 H 0.071 0.929 28 C -0.155 4.155 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.292 0.708 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.449 -12.092 -6.149 14.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.319 3.681 4 O -0.382 6.382 5 C -0.108 4.108 6 H 0.127 0.873 7 C -0.153 4.153 8 C -0.085 4.085 9 N -0.251 5.251 10 C 0.103 3.897 11 N -0.146 5.146 12 N -0.246 5.246 13 C 0.127 3.873 14 C -0.537 4.537 15 H 0.114 0.886 16 C -0.152 4.152 17 N -0.400 5.400 18 Si 0.886 3.114 19 H -0.157 1.157 20 H -0.220 1.220 21 H -0.200 1.200 22 N -0.213 5.213 23 C -0.042 4.042 24 C 0.105 3.895 25 S -0.575 6.575 26 C -0.020 4.020 27 H 0.089 0.911 28 C -0.213 4.213 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.983 -12.817 -4.780 15.358 hybrid contribution 1.100 1.260 -1.428 2.199 sum -5.883 -11.557 -6.209 14.378 Atomic orbital electron populations 1.23248 0.76577 1.03506 1.02609 1.86530 1.23270 1.33731 1.84358 1.23389 0.91676 0.81293 0.71765 1.90681 1.66748 1.36256 1.44565 1.21987 0.87757 1.02351 0.98714 0.87278 1.22663 0.99307 0.94948 0.98355 1.23558 0.96217 1.02978 0.85751 1.64686 1.23954 1.27957 1.08467 1.21920 0.90747 0.78693 0.98325 1.48587 1.28227 1.14372 1.23397 1.78630 1.30351 1.00099 1.15507 1.21248 0.86092 0.94521 0.85401 1.19489 1.32407 0.94834 1.06949 0.88566 1.27187 0.88954 1.04416 0.94628 1.70591 1.28235 1.01634 1.39549 0.83568 0.78947 0.74999 0.73866 1.15659 1.22005 1.19955 1.45913 1.34566 1.12543 1.28272 1.21776 0.90518 0.91084 1.00821 1.22977 0.89163 0.85422 0.91955 1.92764 1.66746 1.73055 1.24972 1.22057 0.96239 0.91184 0.92530 0.91114 1.22045 0.97612 1.02052 0.99554 0.88226 0.91846 0.91990 0.89185 0.90120 0.89815 0.90132 0.90102 0.87786 0.89596 0.91206 0.89067 0.89869 0.90856 0.92149 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.93 10.20 -39.27 -0.40 -4.33 16 3 C 0.48 6.11 4.83 36.00 0.17 6.28 16 4 O -0.50 -7.86 14.70 -18.75 -0.28 -8.14 16 5 C -0.09 -1.04 3.49 -90.42 -0.32 -1.36 16 6 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 7 C -0.11 -1.54 6.56 -24.87 -0.16 -1.70 16 8 C 0.04 0.69 4.85 -1.90 -0.01 0.68 16 9 N -0.52 -8.58 5.05 -226.45 -1.14 -9.72 16 10 C 0.32 5.47 5.71 -63.32 -0.36 5.11 16 11 N -0.36 -7.71 3.70 -65.05 -0.24 -7.96 16 12 N -0.41 -9.68 8.35 31.21 0.26 -9.42 16 13 C 0.37 8.74 7.05 -155.28 -1.09 7.64 16 14 C -0.49 -11.66 9.29 -38.20 -0.35 -12.01 16 15 H 0.10 2.20 7.27 -52.49 -0.38 1.82 16 16 C 0.08 1.80 5.49 -17.32 -0.10 1.71 16 17 N -0.78 -18.82 13.65 55.55 0.76 -18.06 16 18 Si 1.06 22.84 27.33 -169.99 -4.65 18.20 16 19 H -0.23 -5.07 5.62 56.52 0.32 -4.76 16 20 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 22 N -0.51 -11.08 3.17 -124.66 -0.39 -11.47 16 23 C 0.10 1.75 10.67 59.85 0.64 2.39 16 24 C 0.47 10.41 7.19 -86.92 -0.63 9.78 16 25 S -0.70 -15.39 26.93 -107.50 -2.90 -18.29 16 26 C 0.09 1.14 3.07 -66.64 -0.20 0.93 16 27 H 0.07 0.76 7.77 -51.93 -0.40 0.36 16 28 C -0.16 -1.98 8.37 37.16 0.31 -1.67 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 31 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.09 1.39 6.91 -51.93 -0.36 1.03 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 1.64 7.79 -51.93 -0.40 1.23 16 35 H 0.08 1.35 6.53 -51.93 -0.34 1.01 16 36 H 0.08 1.34 7.40 -51.93 -0.38 0.96 16 37 H 0.10 1.66 8.11 -51.92 -0.42 1.24 16 38 H 0.29 6.74 8.73 -40.82 -0.36 6.39 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.09 1.54 7.62 -51.93 -0.40 1.14 16 41 H 0.08 1.32 7.26 -51.92 -0.38 0.95 16 42 H 0.07 1.13 7.04 -51.93 -0.37 0.76 16 43 H 0.06 0.66 7.14 -51.93 -0.37 0.29 16 44 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 LS Contribution 366.58 15.07 5.52 5.52 Total: -1.00 -29.99 366.58 -10.88 -40.87 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.40 Total: 3.68 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: -1.03 Total: 19.12 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: -0.76 Total: -56.63 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.68 Total: -12.47 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.65 Total: 18.20 kcal Atomic # 16 Polarization: -15.39 SS G_CDS: -2.90 Total: -18.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.99 -10.88 -40.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794646058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.164 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds