Wall clock time and date at job start Sat Apr 11 2020 05:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34233 * 116.99692 * 2 1 4 4 O 1.20822 * 119.99951 * 0.02562 * 3 2 1 5 5 C 1.50695 * 119.99688 * 180.02562 * 3 2 1 6 6 H 1.09000 * 110.35743 * 27.33312 * 5 3 2 7 7 C 1.54598 * 110.31058 * 149.47703 * 5 3 2 8 8 C 1.54934 * 102.92561 * 140.87034 * 7 5 3 9 9 N 1.48532 * 103.22693 * 322.58729 * 8 7 5 10 10 C 1.46894 * 111.00012 * 159.72238 * 9 8 7 11 11 N 1.46497 * 109.47710 * 69.87621 * 10 9 8 12 12 N 1.40161 * 126.14869 * 90.01801 * 11 10 9 13 13 C 1.32246 * 107.75848 * 179.97438 * 12 11 10 14 14 C 1.40111 * 125.92639 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00157 * 190.65869 * 14 13 12 16 16 C 1.40041 * 120.00153 * 10.65878 * 14 13 12 17 17 N 1.30793 * 120.00079 * 205.65187 * 16 14 13 18 18 Si 1.86801 * 119.99836 * 25.65228 * 16 14 13 19 19 H 1.48498 * 109.47020 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47508 * 120.00166 * 18 16 14 21 21 H 1.48506 * 109.47053 * 240.00093 * 18 16 14 22 22 N 1.38494 * 108.14565 * 0.26350 * 13 12 11 23 23 C 1.46500 * 125.83824 * 179.70140 * 22 13 12 24 24 C 1.34735 * 108.33419 * 359.56521 * 22 13 12 25 25 S 1.71195 * 125.97905 * 180.15706 * 24 22 13 26 26 C 1.47901 * 105.81911 * 39.20348 * 9 8 7 27 27 H 1.08999 * 109.91631 * 94.02913 * 26 9 8 28 28 C 1.52999 * 109.91874 * 215.31621 * 26 9 8 29 29 H 1.09003 * 109.46921 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47009 * 299.98984 * 1 2 3 31 31 H 1.09000 * 109.47807 * 59.99749 * 1 2 3 32 32 H 1.09007 * 110.72001 * 22.50851 * 7 5 3 33 33 H 1.09000 * 110.72485 * 259.23137 * 7 5 3 34 34 H 1.09002 * 110.66727 * 204.15487 * 8 7 5 35 35 H 1.08995 * 110.66756 * 81.02198 * 8 7 5 36 36 H 1.08997 * 109.47058 * 309.86956 * 10 9 8 37 37 H 1.09008 * 109.47127 * 189.87396 * 10 9 8 38 38 H 0.96999 * 120.00240 * 5.08488 * 17 16 14 39 39 H 1.08996 * 109.47245 * 89.99921 * 23 22 13 40 40 H 1.09000 * 109.47678 * 210.00482 * 23 22 13 41 41 H 1.09009 * 109.46786 * 330.00060 * 23 22 13 42 42 H 1.08997 * 109.47432 * 54.86571 * 28 26 9 43 43 H 1.09001 * 109.47516 * 174.86893 * 28 26 9 44 44 H 1.09009 * 109.47200 * 294.86943 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 1 3.9922 0.3883 -0.4702 7 6 4.0365 2.5504 -0.7369 8 6 5.2324 3.0272 0.1251 9 7 4.7939 2.7246 1.5116 10 6 5.9433 2.6536 2.4235 11 7 6.5055 3.9940 2.6061 12 7 6.1339 4.9193 3.5912 13 6 6.8697 6.0051 3.4228 14 6 6.8095 7.1681 4.2020 15 1 7.3264 8.0604 3.8812 16 6 6.0789 7.1733 5.3967 17 7 5.5949 8.2957 5.8623 18 14 5.7959 5.5775 6.3254 19 1 6.4412 4.4579 5.5938 20 1 6.3835 5.6849 7.6850 21 1 4.3374 5.3208 6.4355 22 7 7.7065 5.7954 2.3393 23 6 8.6807 6.7529 1.8099 24 6 7.4736 4.5590 1.8571 25 16 8.2636 3.8349 0.5220 26 6 4.0942 1.4236 1.4383 27 1 4.7893 0.6149 1.6643 28 6 2.9265 1.4034 2.4267 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3635 0.5138 -0.8899 32 1 3.2466 3.3015 -0.7499 33 1 4.3615 2.3133 -1.7499 34 1 5.3956 4.0974 -0.0018 35 1 6.1337 2.4673 -0.1242 36 1 6.7025 1.9957 2.0006 37 1 5.6188 2.2614 3.3874 38 1 5.6777 9.1115 5.3443 39 1 9.6399 6.6077 2.3068 40 1 8.7994 6.5954 0.7379 41 1 8.3276 7.7682 1.9910 42 1 2.2746 2.2560 2.2365 43 1 2.3615 0.4795 2.3029 44 1 3.3113 1.4603 3.4450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794646058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:38 Heat of formation + Delta-G solvation = -14.393616 kcal Electronic energy + Delta-G solvation = -28475.755568 eV Core-core repulsion = 24555.548588 eV Total energy + Delta-G solvation = -3920.206980 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.87963 -42.00239 -39.92815 -37.52642 -36.50829 -35.85803 -33.83882 -32.56643 -32.42116 -29.53649 -28.55907 -28.24086 -27.08174 -25.76552 -23.72678 -23.67234 -22.41398 -22.05963 -20.72304 -20.30364 -18.94934 -18.61667 -17.82998 -17.58174 -17.46430 -17.30481 -16.80484 -16.46133 -15.97346 -15.57833 -15.50170 -15.34727 -14.86606 -14.64437 -14.47545 -14.23144 -13.73000 -13.69316 -13.59469 -13.39202 -13.15636 -13.05418 -12.95313 -12.81760 -12.54716 -12.51137 -12.43785 -12.09019 -12.06846 -11.86641 -11.76077 -11.62475 -11.44302 -11.21634 -10.88675 -10.61130 -9.69224 -9.62064 -8.74297 -8.55157 -7.14374 0.38150 0.66383 1.09641 1.10702 1.41541 1.57254 1.69010 1.70162 1.91326 2.15909 2.32213 2.78703 2.80434 3.32797 3.35042 3.50105 3.80532 3.94947 4.04504 4.07441 4.21159 4.24168 4.31860 4.33182 4.34671 4.36007 4.37693 4.57967 4.60642 4.62033 4.71464 4.73777 4.76057 4.85139 4.96873 5.03359 5.09878 5.16873 5.28280 5.35763 5.55649 5.66462 5.78007 5.98622 6.15881 6.32605 6.71708 6.97386 7.78060 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012577 B = 0.003923 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.784033 B = 7136.446847 C = 8573.836195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.481 3.519 4 O -0.534 6.534 5 C -0.083 4.083 6 H 0.146 0.854 7 C -0.108 4.108 8 C 0.053 3.947 9 N -0.544 5.544 10 C 0.309 3.691 11 N -0.360 5.360 12 N -0.425 5.425 13 C 0.365 3.635 14 C -0.505 4.505 15 H 0.097 0.903 16 C 0.053 3.947 17 N -0.795 5.795 18 Si 1.093 2.907 19 H -0.239 1.239 20 H -0.278 1.278 21 H -0.281 1.281 22 N -0.517 5.517 23 C 0.097 3.903 24 C 0.464 3.536 25 S -0.707 6.707 26 C 0.087 3.913 27 H 0.103 0.897 28 C -0.149 4.149 29 H 0.135 0.865 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.104 0.896 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.293 0.707 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.040 0.960 43 H 0.081 0.919 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 -14.477 -6.474 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.325 3.675 4 O -0.423 6.423 5 C -0.102 4.102 6 H 0.164 0.836 7 C -0.146 4.146 8 C -0.074 4.074 9 N -0.271 5.271 10 C 0.099 3.901 11 N -0.147 5.147 12 N -0.260 5.260 13 C 0.118 3.882 14 C -0.547 4.547 15 H 0.115 0.885 16 C -0.172 4.172 17 N -0.417 5.417 18 Si 0.915 3.085 19 H -0.163 1.163 20 H -0.205 1.205 21 H -0.207 1.207 22 N -0.217 5.217 23 C -0.045 4.045 24 C 0.095 3.905 25 S -0.582 6.582 26 C -0.021 4.021 27 H 0.120 0.880 28 C -0.206 4.206 29 H 0.153 0.847 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.123 0.877 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.977 -15.219 -5.115 17.506 hybrid contribution 1.039 1.964 -1.388 2.620 sum -5.939 -13.255 -6.503 15.914 Atomic orbital electron populations 1.23542 0.75023 1.05733 1.02306 1.86518 1.24746 1.32366 1.83712 1.23533 0.91996 0.81265 0.70754 1.90678 1.67628 1.37637 1.46346 1.22030 0.87372 1.02793 0.98045 0.83579 1.22553 0.97375 0.95237 0.99404 1.23286 0.97264 1.00362 0.86495 1.64612 1.23612 1.30608 1.08284 1.22210 0.91433 0.77062 0.99427 1.48976 1.27992 1.15100 1.22598 1.78534 1.30472 1.00705 1.16302 1.21263 0.86471 0.94499 0.86009 1.19528 1.32817 0.95054 1.07301 0.88514 1.27829 0.88686 1.05444 0.95191 1.70612 1.29146 1.01957 1.40019 0.83169 0.78311 0.73146 0.73900 1.16275 1.20530 1.20675 1.46184 1.34761 1.12985 1.27777 1.22011 0.90465 0.90930 1.01051 1.23090 0.89555 0.85709 0.92183 1.92683 1.66987 1.73233 1.25345 1.22220 0.96387 0.90291 0.93176 0.87955 1.21988 0.97281 1.01676 0.99673 0.84717 0.92415 0.92154 0.91708 0.87721 0.93920 0.90390 0.89100 0.86481 0.89547 0.89613 0.88703 0.88685 0.94045 0.90032 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.36 -6.81 10.20 -51.44 -0.52 -7.34 16 3 C 0.48 11.50 4.83 71.23 0.34 11.85 16 4 O -0.53 -16.83 14.70 21.97 0.32 -16.50 16 5 C -0.08 -1.76 3.49 -10.66 -0.04 -1.79 16 6 H 0.15 2.06 8.14 -2.39 -0.02 2.05 16 7 C -0.11 -2.78 6.56 31.80 0.21 -2.57 16 8 C 0.05 1.71 4.85 86.65 0.42 2.13 16 9 N -0.54 -17.33 5.05 -870.36 -4.40 -21.72 16 10 C 0.31 10.35 5.71 170.81 0.97 11.32 16 11 N -0.36 -15.25 3.70 -359.72 -1.33 -16.58 16 12 N -0.42 -19.91 8.35 -55.17 -0.46 -20.37 16 13 C 0.36 17.02 7.05 133.52 0.94 17.96 16 14 C -0.50 -23.76 9.29 23.16 0.22 -23.55 16 15 H 0.10 4.43 7.27 -2.91 -0.02 4.41 16 16 C 0.05 2.53 5.49 85.28 0.47 3.00 16 17 N -0.80 -38.38 13.65 21.84 0.30 -38.08 16 18 Si 1.09 45.93 27.33 68.60 1.87 47.81 16 19 H -0.24 -10.18 5.62 99.48 0.56 -9.62 16 20 H -0.28 -10.96 7.11 99.48 0.71 -10.26 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 N -0.52 -22.12 3.17 -548.30 -1.74 -23.85 16 23 C 0.10 3.27 10.67 127.77 1.36 4.63 16 24 C 0.46 20.17 7.19 179.06 1.29 21.46 16 25 S -0.71 -30.46 26.93 -56.49 -1.52 -31.98 16 26 C 0.09 2.03 3.07 45.06 0.14 2.17 16 27 H 0.10 1.80 7.77 -2.39 -0.02 1.78 16 28 C -0.15 -3.55 8.37 71.98 0.60 -2.95 16 29 H 0.13 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.90 8.13 -2.39 -0.02 0.88 16 31 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 32 H 0.06 2.03 6.91 -2.38 -0.02 2.01 16 33 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.04 1.70 7.79 -2.39 -0.02 1.69 16 35 H 0.08 2.53 6.53 -2.39 -0.02 2.51 16 36 H 0.09 2.85 7.40 -2.39 -0.02 2.83 16 37 H 0.12 3.55 8.11 -2.38 -0.02 3.53 16 38 H 0.29 13.59 8.73 -92.71 -0.81 12.78 16 39 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.09 3.13 7.62 -2.39 -0.02 3.11 16 41 H 0.09 2.95 7.26 -2.38 -0.02 2.93 16 42 H 0.04 1.26 7.04 -2.39 -0.02 1.24 16 43 H 0.08 1.58 7.14 -2.39 -0.02 1.56 16 44 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -64.63 366.58 1.48 -63.14 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.83 Total: 20.23 kcal Atomic # 6 Polarization: 37.12 SS G_CDS: 8.12 Total: 45.24 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -7.63 Total: -120.61 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.20 Total: -23.84 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.87 Total: 47.81 kcal Atomic # 16 Polarization: -30.46 SS G_CDS: -1.52 Total: -31.98 kcal Total: -64.63 1.48 -63.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794646058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.750 kcal (2) G-P(sol) polarization free energy of solvation -64.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds