Wall clock time and date at job start Sat Apr 11 2020 05:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00428 * 2 1 4 4 O 1.20820 * 119.99843 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99964 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.62902 * 303.11003 * 5 3 2 7 7 C 1.55143 * 110.70215 * 66.40658 * 5 3 2 8 8 C 1.54905 * 101.65400 * 154.03334 * 7 5 3 9 9 N 1.47844 * 104.79582 * 322.92776 * 8 7 5 10 10 C 1.46894 * 111.00097 * 146.36135 * 9 8 7 11 11 N 1.46498 * 109.47237 * 55.71768 * 10 9 8 12 12 N 1.40169 * 126.14339 * 90.02682 * 11 10 9 13 13 C 1.32235 * 107.75862 * 179.97438 * 12 11 10 14 14 C 1.40119 * 125.92815 * 179.97438 * 13 12 11 15 15 H 1.07997 * 120.00603 * 180.02562 * 14 13 12 16 16 C 1.40040 * 119.99794 * 0.02562 * 14 13 12 17 17 N 1.30798 * 120.00362 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99827 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47031 * 90.00160 * 18 16 14 20 20 H 1.48511 * 109.47136 * 209.99919 * 18 16 14 21 21 H 1.48495 * 109.47581 * 329.99730 * 18 16 14 22 22 N 1.38497 * 108.14909 * 359.97438 * 13 12 11 23 23 C 1.46498 * 125.84000 * 180.02562 * 22 13 12 24 24 C 1.34728 * 108.32802 * 359.75693 * 22 13 12 25 25 S 1.71206 * 125.97565 * 180.24291 * 24 22 13 26 26 C 1.47445 * 108.56645 * 24.09707 * 9 8 7 27 27 H 1.09004 * 110.02388 * 239.53051 * 26 9 8 28 28 C 1.52996 * 109.89041 * 118.41738 * 26 9 8 29 29 H 1.08994 * 109.46895 * 59.99292 * 1 2 3 30 30 H 1.08994 * 109.47423 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46731 * 299.99927 * 1 2 3 32 32 H 1.09005 * 110.98855 * 272.12653 * 7 5 3 33 33 H 1.09004 * 110.99269 * 35.93988 * 7 5 3 34 34 H 1.08996 * 110.37561 * 204.09582 * 8 7 5 35 35 H 1.08998 * 110.46509 * 81.80522 * 8 7 5 36 36 H 1.08998 * 109.47342 * 175.71808 * 10 9 8 37 37 H 1.08998 * 109.47544 * 295.71717 * 10 9 8 38 38 H 0.96993 * 120.00316 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.47548 * 89.99535 * 23 22 13 40 40 H 1.08994 * 109.47312 * 210.00132 * 23 22 13 41 41 H 1.09002 * 109.46946 * 329.99723 * 23 22 13 42 42 H 1.08997 * 109.46872 * 298.44532 * 28 26 9 43 43 H 1.08993 * 109.47215 * 58.44977 * 28 26 9 44 44 H 1.09002 * 109.46870 * 178.44726 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 0.0005 5 6 3.5665 1.2747 0.0006 6 1 3.9787 0.7385 0.8553 7 6 4.1450 0.7230 -1.3290 8 6 5.4939 1.4791 -1.4209 9 7 5.2067 2.8294 -0.8918 10 6 6.3710 3.3754 -0.1819 11 7 7.5338 3.3683 -1.0731 12 7 7.9215 4.4039 -1.9344 13 6 9.0167 4.0151 -2.5653 14 6 9.7259 4.7602 -3.5167 15 1 10.6126 4.3472 -3.9746 16 6 9.2851 6.0406 -3.8737 17 7 8.2117 6.5411 -3.3188 18 14 10.2311 7.0343 -5.1414 19 1 9.6979 6.7435 -6.4965 20 1 10.0785 8.4824 -4.8497 21 1 11.6689 6.6671 -5.0859 22 7 9.3410 2.7435 -2.1227 23 6 10.4861 1.9460 -2.5689 24 6 8.4269 2.3675 -1.2072 25 16 8.4010 0.8772 -0.3650 26 6 4.0359 2.7447 0.0005 27 1 3.2378 3.3888 -0.3689 28 6 4.4300 3.1654 1.4177 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 4.3042 -0.3537 -1.2686 33 1 3.4987 0.9740 -2.1701 34 1 5.8249 1.5402 -2.4576 35 1 6.2499 0.9852 -0.8105 36 1 6.1593 4.3978 0.1310 37 1 6.5818 2.7634 0.6951 38 1 7.9061 7.4277 -3.5664 39 1 11.3452 2.1553 -1.9315 40 1 10.2373 0.8866 -2.5070 41 1 10.7278 2.2027 -3.6003 42 1 5.1935 2.4872 1.7988 43 1 4.8233 4.1817 1.3989 44 1 3.5539 3.1267 2.0650 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794646063.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:42 Heat of formation + Delta-G solvation = -5.537591 kcal Electronic energy + Delta-G solvation = -28285.821809 eV Core-core repulsion = 24365.998856 eV Total energy + Delta-G solvation = -3919.822954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.72770 -41.91892 -40.20751 -37.58191 -36.33538 -35.66711 -33.66040 -32.65696 -31.86812 -29.51110 -28.52271 -28.30071 -26.91809 -26.17835 -23.70416 -23.50207 -22.63062 -21.82248 -20.68287 -19.46505 -18.93553 -18.35455 -18.01488 -17.60373 -17.49013 -17.29204 -16.74001 -16.49893 -16.30872 -15.49560 -15.43597 -15.02044 -14.84213 -14.37921 -14.17679 -14.04492 -13.73404 -13.57417 -13.45611 -13.38436 -13.17955 -13.00856 -12.86407 -12.79736 -12.59631 -12.51547 -12.46092 -12.08221 -11.99347 -11.89975 -11.82436 -11.70998 -11.47373 -11.37316 -10.91013 -10.65114 -9.58228 -8.77577 -8.64550 -8.33150 -6.96734 0.50575 0.76455 1.04390 1.28842 1.44801 1.55643 1.60602 1.70333 1.86370 2.12299 2.40130 2.81004 3.10093 3.23506 3.44982 3.58916 3.71758 3.95082 4.04419 4.07887 4.18101 4.27454 4.29404 4.31750 4.32648 4.46416 4.52381 4.55968 4.63130 4.69420 4.71733 4.84015 4.86942 4.88223 5.01855 5.08313 5.11941 5.18032 5.26292 5.28319 5.64362 5.76180 5.92270 6.11847 6.48367 6.57104 6.62556 7.33132 8.25326 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015496 B = 0.003244 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.478723 B = 8629.686256 C = 9630.648906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.482 3.518 4 O -0.529 6.529 5 C -0.094 4.094 6 H 0.137 0.863 7 C -0.098 4.098 8 C 0.017 3.983 9 N -0.547 5.547 10 C 0.316 3.684 11 N -0.373 5.373 12 N -0.367 5.367 13 C 0.351 3.649 14 C -0.451 4.451 15 H 0.120 0.880 16 C 0.034 3.966 17 N -0.775 5.775 18 Si 1.006 2.994 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.245 1.245 22 N -0.515 5.515 23 C 0.094 3.906 24 C 0.451 3.549 25 S -0.717 6.717 26 C 0.091 3.909 27 H 0.092 0.908 28 C -0.173 4.173 29 H 0.059 0.941 30 H 0.133 0.867 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.088 0.912 38 H 0.291 0.709 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 -6.608 2.599 10.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.326 3.674 4 O -0.418 6.418 5 C -0.114 4.114 6 H 0.155 0.845 7 C -0.136 4.136 8 C -0.112 4.112 9 N -0.274 5.274 10 C 0.106 3.894 11 N -0.158 5.158 12 N -0.199 5.199 13 C 0.102 3.898 14 C -0.492 4.492 15 H 0.138 0.862 16 C -0.189 4.189 17 N -0.400 5.400 18 Si 0.825 3.175 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.168 1.168 22 N -0.215 5.215 23 C -0.047 4.047 24 C 0.080 3.920 25 S -0.592 6.592 26 C -0.017 4.017 27 H 0.110 0.890 28 C -0.231 4.231 29 H 0.078 0.922 30 H 0.151 0.849 31 H 0.084 0.916 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.055 0.945 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.369 -5.894 2.889 10.636 hybrid contribution 0.625 0.421 -0.459 0.882 sum -7.744 -5.473 2.430 9.789 Atomic orbital electron populations 1.23590 0.74596 1.05845 1.02597 1.86514 1.25118 1.32289 1.83505 1.23408 0.91516 0.81380 0.71138 1.90649 1.67474 1.37203 1.46519 1.22345 0.87601 0.98786 1.02633 0.84546 1.22557 0.94906 1.01422 0.94699 1.23751 0.99315 0.87805 1.00304 1.63795 1.04320 1.24378 1.34903 1.22317 0.77942 1.02118 0.87025 1.49486 1.20912 1.11616 1.33822 1.79377 1.18001 1.07386 1.15171 1.21733 0.91723 0.81304 0.95019 1.18913 1.11466 0.99843 1.19019 0.86241 1.26916 0.95437 0.98108 0.98487 1.69983 1.19006 1.16558 1.34454 0.84817 0.79346 0.76559 0.76778 1.18758 1.19748 1.16768 1.46257 1.25081 1.16169 1.33993 1.22062 0.84925 0.95817 1.01944 1.23040 0.86201 0.92853 0.89879 1.92497 1.90871 1.13199 1.62618 1.22299 0.92143 0.94372 0.92848 0.88985 1.22385 1.03165 1.02527 0.95029 0.92173 0.84859 0.91617 0.87485 0.91195 0.94534 0.87827 0.87623 0.89415 0.89814 0.89944 0.88955 0.87625 0.91158 0.91205 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.36 -7.78 10.56 -51.40 -0.54 -8.32 16 3 C 0.48 12.40 7.26 71.24 0.52 12.91 16 4 O -0.53 -16.20 15.17 21.98 0.33 -15.87 16 5 C -0.09 -2.39 2.98 -10.36 -0.03 -2.42 16 6 H 0.14 2.99 7.82 -2.39 -0.02 2.97 16 7 C -0.10 -2.71 6.51 31.98 0.21 -2.51 16 8 C 0.02 0.61 5.57 86.77 0.48 1.09 16 9 N -0.55 -20.14 5.37 -872.83 -4.69 -24.83 16 10 C 0.32 12.35 4.82 170.81 0.82 13.17 16 11 N -0.37 -17.40 3.47 -359.74 -1.25 -18.65 16 12 N -0.37 -19.23 10.77 -55.17 -0.59 -19.83 16 13 C 0.35 17.28 7.50 133.53 1.00 18.28 16 14 C -0.45 -20.59 8.98 23.16 0.21 -20.38 16 15 H 0.12 4.72 7.11 -2.91 -0.02 4.69 16 16 C 0.03 1.49 5.50 85.28 0.47 1.96 16 17 N -0.78 -38.16 11.90 21.84 0.26 -37.90 16 18 Si 1.01 32.88 29.56 68.60 2.03 34.90 16 19 H -0.26 -8.43 7.11 99.48 0.71 -7.72 16 20 H -0.27 -8.82 7.11 99.48 0.71 -8.11 16 21 H -0.24 -7.37 7.11 99.48 0.71 -6.66 16 22 N -0.51 -22.78 3.17 -548.31 -1.74 -24.51 16 23 C 0.09 3.14 10.64 127.77 1.36 4.50 16 24 C 0.45 20.82 7.05 179.06 1.26 22.08 16 25 S -0.72 -32.33 26.47 -56.49 -1.50 -33.83 16 26 C 0.09 2.71 3.45 45.26 0.16 2.87 16 27 H 0.09 3.03 6.80 -2.39 -0.02 3.01 16 28 C -0.17 -4.27 7.84 71.98 0.56 -3.71 16 29 H 0.06 0.95 8.13 -2.39 -0.02 0.94 16 30 H 0.13 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.07 0.96 8.13 -2.38 -0.02 0.94 16 32 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 33 H 0.07 1.97 8.04 -2.38 -0.02 1.95 16 34 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.10 4.08 4.14 -12.27 -0.05 4.03 16 36 H 0.11 4.05 6.89 -2.39 -0.02 4.03 16 37 H 0.09 3.24 5.83 -2.39 -0.01 3.23 16 38 H 0.29 13.03 8.29 -92.71 -0.77 12.26 16 39 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 40 H 0.09 3.04 7.62 -2.39 -0.02 3.02 16 41 H 0.11 3.04 7.32 -2.39 -0.02 3.03 16 42 H 0.07 1.69 6.72 -2.39 -0.02 1.67 16 43 H 0.07 1.75 6.58 -2.39 -0.02 1.74 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -66.53 366.57 1.53 -65.00 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: 0.99 Total: 34.40 kcal Atomic # 6 Polarization: 41.22 SS G_CDS: 8.22 Total: 49.44 kcal Atomic # 7 Polarization: -117.72 SS G_CDS: -8.01 Total: -125.72 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.21 Total: -24.19 kcal Atomic # 14 Polarization: 32.88 SS G_CDS: 2.03 Total: 34.90 kcal Atomic # 16 Polarization: -32.33 SS G_CDS: -1.50 Total: -33.83 kcal Total: -66.53 1.53 -65.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794646063.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.461 kcal (2) G-P(sol) polarization free energy of solvation -66.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds