Wall clock time and date at job start Sat Apr 11 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35715 * 117.00246 * 2 1 4 4 C 1.38931 * 119.86415 * 179.97438 * 3 2 1 5 5 C 1.37973 * 120.13213 * 179.97438 * 4 3 2 6 6 F 1.35091 * 120.06723 * 180.02562 * 5 4 3 7 7 C 1.40058 * 119.86022 * 359.97438 * 5 4 3 8 8 C 1.47308 * 120.12880 * 179.97438 * 7 5 4 9 9 O 1.21623 * 119.99900 * 90.00068 * 8 7 5 10 10 N 1.34777 * 120.00070 * 269.72699 * 8 7 5 11 11 C 1.47423 * 125.64535 * 180.27750 * 10 8 7 12 12 C 1.54910 * 104.82934 * 204.08728 * 11 10 8 13 13 H 1.08997 * 111.00677 * 81.06284 * 12 11 10 14 14 C 1.53003 * 111.00557 * 204.91781 * 12 11 10 15 15 C 1.55157 * 101.58273 * 322.99122 * 12 11 10 16 16 H 1.08999 * 110.72173 * 277.13931 * 15 12 11 17 17 N 1.46501 * 110.72170 * 154.04411 * 15 12 11 18 18 C 1.36933 * 120.00300 * 155.00360 * 17 15 12 19 19 H 1.08002 * 119.99995 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00298 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99972 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00224 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46735 * 60.00290 * 22 20 18 24 24 H 1.48497 * 109.46892 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47167 * 300.00369 * 22 20 18 26 26 C 1.47021 * 125.64884 * 359.96222 * 10 8 7 27 27 C 1.40060 * 119.73844 * 0.25073 * 7 5 4 28 28 F 1.35096 * 120.06654 * 179.72173 * 27 7 5 29 29 C 1.37965 * 119.86311 * 359.47180 * 27 7 5 30 30 H 1.08995 * 109.47536 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47130 * 300.00771 * 1 2 3 32 32 H 1.08999 * 109.46831 * 60.00323 * 1 2 3 33 33 H 1.08002 * 119.93641 * 359.97173 * 4 3 2 34 34 H 1.09000 * 110.36923 * 322.92470 * 11 10 8 35 35 H 1.09005 * 110.36919 * 85.14325 * 11 10 8 36 36 H 1.08998 * 109.47265 * 58.54872 * 14 12 11 37 37 H 1.09004 * 109.46814 * 178.54879 * 14 12 11 38 38 H 1.08999 * 109.46798 * 298.54157 * 14 12 11 39 39 H 0.96999 * 119.99783 * 334.99676 * 17 15 12 40 40 H 0.97005 * 120.00026 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.88257 * 298.40212 * 26 10 8 42 42 H 1.09000 * 109.88161 * 59.56145 * 26 10 8 43 43 H 1.07997 * 119.92966 * 180.25021 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4328 1.2786 0.0005 5 6 4.0650 2.5049 0.0000 6 9 5.4143 2.5709 0.0000 7 6 3.3048 3.6813 -0.0016 8 6 3.9736 4.9938 -0.0016 9 8 4.2510 5.5350 -1.0549 10 7 4.2732 5.5975 1.1655 11 6 4.9334 6.9077 1.3105 12 6 5.5916 6.8671 2.7122 13 1 6.5411 6.3325 2.6827 14 6 5.7767 8.2788 3.2723 15 6 4.5348 6.0785 3.5299 16 1 3.7388 6.7404 3.8713 17 7 5.1611 5.3960 4.6649 18 6 4.4179 5.0859 5.7724 19 1 3.3701 5.3448 5.8094 20 6 5.0113 4.4388 6.8475 21 7 6.2882 4.1228 6.8023 22 14 3.9976 4.0163 8.3587 23 1 2.8813 3.1171 7.9703 24 1 4.8586 3.3329 9.3571 25 1 3.4468 5.2624 8.9495 26 6 3.9900 5.0614 2.5049 27 6 1.9063 3.6048 0.0026 28 9 1.1667 4.7353 0.0068 29 6 1.2857 2.3727 -0.0027 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0178 0.3707 0.0014 34 1 5.6921 7.0377 0.5388 35 1 4.1982 7.7108 1.2580 36 1 4.8085 8.7758 3.3321 37 1 6.2170 8.2199 4.2677 38 1 6.4367 8.8463 2.6162 39 1 6.1023 5.1637 4.6318 40 1 6.7028 3.6702 7.5535 41 1 2.9148 4.9399 2.6358 42 1 4.4920 4.1026 2.6342 43 1 0.2074 2.3124 -0.0035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000939173347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:45 Heat of formation + Delta-G solvation = -114.851463 kcal Electronic energy + Delta-G solvation = -30250.763476 eV Core-core repulsion = 25740.067179 eV Total energy + Delta-G solvation = -4510.696296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.29208 -49.20553 -40.54303 -39.79129 -37.81195 -36.96706 -34.10721 -32.60319 -31.09066 -30.80530 -30.54717 -27.93717 -27.55244 -26.29394 -24.15615 -23.52135 -23.05923 -21.56612 -19.99474 -19.73297 -19.08153 -17.98838 -17.36845 -17.19371 -16.68788 -16.54294 -16.21892 -16.07082 -15.66030 -15.62479 -15.49917 -14.97239 -14.85243 -14.55005 -14.10210 -13.59322 -13.32089 -13.19195 -13.08983 -12.85428 -12.67072 -12.60978 -12.42871 -12.26877 -12.11618 -11.78835 -11.56096 -11.23120 -11.16273 -11.00503 -10.75412 -10.63344 -10.30461 -10.06827 -9.94425 -9.74394 -9.16698 -9.03036 -8.73337 -8.41443 -7.12516 -5.87036 -3.18180 0.58795 0.64393 2.52862 2.59520 2.88801 3.17725 3.37689 3.42768 3.43604 3.57281 4.01525 4.34815 4.43998 4.51378 4.51819 4.69236 4.75713 4.79896 4.94439 5.10129 5.11976 5.20899 5.40958 5.48369 5.54518 5.55914 5.60735 5.68397 5.74315 5.81528 5.89612 5.97538 6.15494 6.17944 6.23492 6.34922 6.46443 6.49799 6.60009 6.78088 6.83901 7.59560 7.65493 8.16274 8.30152 9.42107 9.95393 10.30716 11.34674 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009130 B = 0.004153 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.964264 B = 6740.358978 C = 8525.969917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.302 6.302 3 C 0.201 3.799 4 C -0.199 4.199 5 C 0.208 3.792 6 F -0.112 7.112 7 C -0.225 4.225 8 C 0.581 3.419 9 O -0.536 6.536 10 N -0.599 5.599 11 C 0.113 3.887 12 C -0.114 4.114 13 H 0.085 0.915 14 C -0.132 4.132 15 C 0.179 3.821 16 H 0.070 0.930 17 N -0.709 5.709 18 C -0.250 4.250 19 H 0.072 0.928 20 C -0.006 4.006 21 N -0.928 5.928 22 Si 0.907 3.093 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.071 3.929 27 C 0.205 3.795 28 F -0.118 7.118 29 C -0.259 4.259 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.158 0.842 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.387 0.613 40 H 0.258 0.742 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.018 -4.106 -14.315 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.214 6.214 3 C 0.154 3.846 4 C -0.218 4.218 5 C 0.187 3.813 6 F -0.090 7.090 7 C -0.230 4.230 8 C 0.368 3.632 9 O -0.414 6.414 10 N -0.331 5.331 11 C -0.009 4.009 12 C -0.134 4.134 13 H 0.103 0.897 14 C -0.189 4.189 15 C 0.066 3.934 16 H 0.088 0.912 17 N -0.349 5.349 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.203 4.203 21 N -0.575 5.575 22 Si 0.738 3.262 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.055 4.055 27 C 0.185 3.815 28 F -0.096 7.096 29 C -0.278 4.278 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.176 0.824 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.888 -4.034 -14.739 18.201 hybrid contribution -0.466 -0.210 0.913 1.047 sum -10.354 -4.243 -13.826 17.786 Atomic orbital electron populations 1.23246 0.77234 1.04766 1.02111 1.86089 1.22320 1.25586 1.87369 1.18305 0.91011 0.84063 0.91195 1.20172 0.92420 0.97725 1.11495 1.16712 0.77230 0.91472 0.95850 1.91605 1.27619 1.96997 1.92763 1.19711 0.92896 0.94653 1.15702 1.17226 0.79003 0.83818 0.83176 1.90795 1.54370 1.65553 1.30652 1.48478 1.57806 1.20763 1.06018 1.22338 0.96404 0.84275 0.97903 1.22666 0.99796 0.97794 0.93184 0.89695 1.21592 1.01441 0.94450 1.01464 1.21230 0.93968 0.91198 0.86974 0.91228 1.42343 1.10443 1.68710 1.13362 1.19195 0.93396 1.32067 0.93442 0.91048 1.24753 0.95974 1.01006 0.98540 1.69652 1.10076 1.45787 1.32024 0.86282 0.79041 0.78135 0.82783 1.21202 1.21615 1.21119 1.23421 1.00452 1.00754 0.80892 1.16775 0.86477 0.82218 0.96059 1.91575 1.76041 1.49050 1.92902 1.21063 1.01776 0.90383 1.14598 0.87507 0.91789 0.92002 0.82420 0.90666 0.91271 0.92771 0.91329 0.93143 0.77804 0.93258 0.92304 0.90830 0.82900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.80 101.05 0.99 1.11 16 2 O -0.30 -2.82 10.48 -18.85 -0.20 -3.01 16 3 C 0.20 2.19 6.69 -39.06 -0.26 1.92 16 4 C -0.20 -2.36 9.94 -39.42 -0.39 -2.75 16 5 C 0.21 3.02 7.28 -39.00 -0.28 2.74 16 6 F -0.11 -1.77 16.83 2.25 0.04 -1.73 16 7 C -0.22 -3.52 4.82 -104.84 -0.50 -4.03 16 8 C 0.58 10.52 6.55 -12.57 -0.08 10.44 16 9 O -0.54 -11.00 17.36 5.26 0.09 -10.91 16 10 N -0.60 -10.34 3.33 -171.82 -0.57 -10.91 16 11 C 0.11 1.76 6.37 -2.53 -0.02 1.74 16 12 C -0.11 -1.83 3.27 -88.47 -0.29 -2.12 16 13 H 0.08 1.44 8.01 -51.93 -0.42 1.03 16 14 C -0.13 -1.86 9.30 37.16 0.35 -1.51 16 15 C 0.18 3.36 3.07 -66.09 -0.20 3.15 16 16 H 0.07 1.31 7.96 -51.93 -0.41 0.89 16 17 N -0.71 -16.60 5.16 -51.65 -0.27 -16.87 16 18 C -0.25 -6.52 9.96 -15.06 -0.15 -6.67 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 21 N -0.93 -26.86 13.06 55.49 0.72 -26.14 16 22 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.07 1.27 6.23 -3.06 -0.02 1.25 16 27 C 0.21 2.81 7.28 -39.00 -0.28 2.53 16 28 F -0.12 -1.69 16.83 2.25 0.04 -1.65 16 29 C -0.26 -2.78 8.99 -39.42 -0.35 -3.13 16 30 H 0.11 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.32 7.65 -51.93 -0.40 -0.08 16 32 H 0.06 0.26 7.64 -51.93 -0.40 -0.13 16 33 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 34 H 0.07 1.15 8.04 -51.93 -0.42 0.74 16 35 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 36 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.39 9.76 7.76 -40.82 -0.32 9.44 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.45 8.03 -51.93 -0.42 1.03 16 43 H 0.15 1.19 6.27 -52.49 -0.33 0.86 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -31.58 373.26 -6.74 -38.32 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -5.60 Total: 6.43 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -1.60 Total: 4.40 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.11 Total: -53.92 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.11 Total: -13.92 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.08 Total: -3.38 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.58 -6.74 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939173347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.530 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds