Wall clock time and date at job start Sat Apr 11 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35715 * 117.00246 * 2 1 4 4 C 1.38931 * 119.86415 * 179.97438 * 3 2 1 5 5 C 1.37973 * 120.13213 * 179.97438 * 4 3 2 6 6 F 1.35091 * 120.06723 * 180.02562 * 5 4 3 7 7 C 1.40058 * 119.86022 * 359.97438 * 5 4 3 8 8 C 1.47308 * 120.12880 * 179.97438 * 7 5 4 9 9 O 1.21623 * 119.99900 * 90.00068 * 8 7 5 10 10 N 1.34777 * 120.00070 * 269.72699 * 8 7 5 11 11 C 1.47423 * 125.64535 * 180.27750 * 10 8 7 12 12 C 1.54910 * 104.82934 * 204.08728 * 11 10 8 13 13 H 1.08997 * 111.00677 * 81.06284 * 12 11 10 14 14 C 1.53003 * 111.00557 * 204.91781 * 12 11 10 15 15 C 1.55157 * 101.58273 * 322.99122 * 12 11 10 16 16 H 1.08999 * 110.72173 * 277.13931 * 15 12 11 17 17 N 1.46501 * 110.72170 * 154.04411 * 15 12 11 18 18 C 1.36933 * 120.00300 * 155.00360 * 17 15 12 19 19 H 1.08002 * 119.99995 * 359.97438 * 18 17 15 20 20 C 1.38809 * 120.00298 * 179.97438 * 18 17 15 21 21 N 1.31624 * 119.99972 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00224 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46735 * 60.00290 * 22 20 18 24 24 H 1.48497 * 109.46892 * 179.97438 * 22 20 18 25 25 H 1.48493 * 109.47167 * 300.00369 * 22 20 18 26 26 C 1.47021 * 125.64884 * 359.96222 * 10 8 7 27 27 C 1.40060 * 119.73844 * 0.25073 * 7 5 4 28 28 F 1.35096 * 120.06654 * 179.72173 * 27 7 5 29 29 C 1.37965 * 119.86311 * 359.47180 * 27 7 5 30 30 H 1.08995 * 109.47536 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47130 * 300.00771 * 1 2 3 32 32 H 1.08999 * 109.46831 * 60.00323 * 1 2 3 33 33 H 1.08002 * 119.93641 * 359.97173 * 4 3 2 34 34 H 1.09000 * 110.36923 * 322.92470 * 11 10 8 35 35 H 1.09005 * 110.36919 * 85.14325 * 11 10 8 36 36 H 1.08998 * 109.47265 * 58.54872 * 14 12 11 37 37 H 1.09004 * 109.46814 * 178.54879 * 14 12 11 38 38 H 1.08999 * 109.46798 * 298.54157 * 14 12 11 39 39 H 0.96999 * 119.99783 * 334.99676 * 17 15 12 40 40 H 0.97005 * 120.00026 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.88257 * 298.40212 * 26 10 8 42 42 H 1.09000 * 109.88161 * 59.56145 * 26 10 8 43 43 H 1.07997 * 119.92966 * 180.25021 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2092 0.0000 4 6 3.4328 1.2786 0.0005 5 6 4.0650 2.5049 0.0000 6 9 5.4143 2.5709 0.0000 7 6 3.3048 3.6813 -0.0016 8 6 3.9736 4.9938 -0.0016 9 8 4.2510 5.5350 -1.0549 10 7 4.2732 5.5975 1.1655 11 6 4.9334 6.9077 1.3105 12 6 5.5916 6.8671 2.7122 13 1 6.5411 6.3325 2.6827 14 6 5.7767 8.2788 3.2723 15 6 4.5348 6.0785 3.5299 16 1 3.7388 6.7404 3.8713 17 7 5.1611 5.3960 4.6649 18 6 4.4179 5.0859 5.7724 19 1 3.3701 5.3448 5.8094 20 6 5.0113 4.4388 6.8475 21 7 6.2882 4.1228 6.8023 22 14 3.9976 4.0163 8.3587 23 1 2.8813 3.1171 7.9703 24 1 4.8586 3.3329 9.3571 25 1 3.4468 5.2624 8.9495 26 6 3.9900 5.0614 2.5049 27 6 1.9063 3.6048 0.0026 28 9 1.1667 4.7353 0.0068 29 6 1.2857 2.3727 -0.0027 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0178 0.3707 0.0014 34 1 5.6921 7.0377 0.5388 35 1 4.1982 7.7108 1.2580 36 1 4.8085 8.7758 3.3321 37 1 6.2170 8.2199 4.2677 38 1 6.4367 8.8463 2.6162 39 1 6.1023 5.1637 4.6318 40 1 6.7028 3.6702 7.5535 41 1 2.9148 4.9399 2.6358 42 1 4.4920 4.1026 2.6342 43 1 0.2074 2.3124 -0.0035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939173347.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:44 Heat of formation + Delta-G solvation = -134.522028 kcal Electronic energy + Delta-G solvation = -30251.616456 eV Core-core repulsion = 25740.067179 eV Total energy + Delta-G solvation = -4511.549276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.36642 -50.34302 -41.56526 -40.97823 -39.15975 -38.01282 -35.90455 -34.06965 -32.58470 -31.99863 -31.61519 -29.23118 -28.54333 -27.44950 -25.93326 -24.68528 -24.04652 -23.00628 -21.45792 -21.01062 -20.00295 -19.11917 -18.98778 -18.66997 -17.72454 -17.54212 -17.28573 -17.16506 -17.06290 -16.63449 -16.55152 -16.30830 -16.04983 -15.63173 -15.56636 -15.37399 -14.86762 -14.59749 -14.22426 -14.00314 -13.82322 -13.72258 -13.50166 -13.33383 -13.29939 -13.02963 -12.88945 -12.81330 -12.43473 -12.28712 -12.22884 -12.06084 -11.95893 -11.71249 -11.51763 -11.31914 -10.93786 -10.15245 -9.84576 -9.67840 -9.07915 -7.93512 -5.24172 -0.42722 -0.32970 1.15564 1.50593 1.52234 1.58400 1.70874 1.86778 2.05253 2.56955 2.58580 3.04062 3.09467 3.36759 3.55190 3.58070 3.63863 3.77596 3.82824 3.87263 4.18216 4.27054 4.27999 4.38855 4.40894 4.43708 4.46953 4.57668 4.61033 4.63172 4.78764 4.80572 4.82610 4.83473 5.02875 5.08611 5.13498 5.21950 5.30648 5.46135 5.54479 6.04376 6.22282 6.27064 6.77042 7.34111 8.03999 8.29149 9.29065 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009130 B = 0.004153 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3065.964264 B = 6740.358978 C = 8525.969917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.306 6.306 3 C 0.213 3.787 4 C -0.194 4.194 5 C 0.188 3.812 6 F -0.128 7.128 7 C -0.253 4.253 8 C 0.579 3.421 9 O -0.568 6.568 10 N -0.600 5.600 11 C 0.113 3.887 12 C -0.104 4.104 13 H 0.071 0.929 14 C -0.125 4.125 15 C 0.175 3.825 16 H 0.076 0.924 17 N -0.719 5.719 18 C -0.244 4.244 19 H 0.080 0.920 20 C -0.066 4.066 21 N -0.966 5.966 22 Si 0.968 3.032 23 H -0.278 1.278 24 H -0.299 1.299 25 H -0.277 1.277 26 C 0.087 3.913 27 C 0.194 3.806 28 F -0.124 7.124 29 C -0.240 4.240 30 H 0.129 0.871 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.175 0.825 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.049 0.951 38 H 0.074 0.926 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.581 -4.585 -14.663 19.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.218 6.218 3 C 0.165 3.835 4 C -0.214 4.214 5 C 0.168 3.832 6 F -0.106 7.106 7 C -0.258 4.258 8 C 0.367 3.633 9 O -0.448 6.448 10 N -0.331 5.331 11 C -0.008 4.008 12 C -0.124 4.124 13 H 0.089 0.911 14 C -0.183 4.183 15 C 0.064 3.936 16 H 0.094 0.906 17 N -0.358 5.358 18 C -0.376 4.376 19 H 0.098 0.902 20 C -0.259 4.259 21 N -0.616 5.616 22 Si 0.797 3.203 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.203 1.203 26 C -0.039 4.039 27 C 0.174 3.826 28 F -0.102 7.102 29 C -0.260 4.260 30 H 0.147 0.853 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.193 0.807 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.093 0.907 39 H 0.208 0.792 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -12.499 -4.494 -15.112 20.120 hybrid contribution 0.230 -0.129 0.928 0.965 sum -12.270 -4.623 -14.183 19.316 Atomic orbital electron populations 1.23653 0.74891 1.06809 1.03336 1.86114 1.24665 1.24440 1.86599 1.18327 0.90678 0.84845 0.89699 1.20367 0.93373 0.97249 1.10382 1.16918 0.76678 0.92220 0.97424 1.91556 1.28803 1.97124 1.93151 1.19687 0.93979 0.93688 1.18479 1.17621 0.78496 0.84507 0.82680 1.90758 1.55823 1.66697 1.31527 1.48539 1.57666 1.21277 1.05624 1.22446 0.96884 0.84145 0.97357 1.22566 0.98282 0.98508 0.93016 0.91068 1.21549 1.02648 0.93363 1.00730 1.21406 0.94823 0.91276 0.86118 0.90565 1.42449 1.09885 1.69213 1.14205 1.19585 0.93834 1.30339 0.93835 0.90170 1.25500 0.96939 1.02020 1.01458 1.69811 1.11736 1.47514 1.32566 0.85296 0.77575 0.77998 0.79385 1.20377 1.22542 1.20279 1.23062 1.00399 0.99366 0.81097 1.16931 0.85759 0.83025 0.96888 1.91553 1.75967 1.49634 1.93094 1.21351 1.03407 0.88913 1.12283 0.85279 0.90890 0.90359 0.80723 0.90429 0.89332 0.91425 0.93199 0.90738 0.79218 0.94018 0.91629 0.92930 0.79496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.80 113.37 1.11 1.16 16 2 O -0.31 -4.74 10.48 -90.36 -0.95 -5.68 16 3 C 0.21 4.11 6.69 22.60 0.15 4.26 16 4 C -0.19 -4.42 9.94 22.37 0.22 -4.20 16 5 C 0.19 5.52 7.28 22.65 0.16 5.69 16 6 F -0.13 -4.22 16.83 44.97 0.76 -3.47 16 7 C -0.25 -7.99 4.82 -20.01 -0.10 -8.09 16 8 C 0.58 21.25 6.55 86.63 0.57 21.82 16 9 O -0.57 -23.75 17.36 -4.10 -0.07 -23.82 16 10 N -0.60 -20.75 3.33 -815.77 -2.71 -23.46 16 11 C 0.11 3.43 6.37 86.86 0.55 3.99 16 12 C -0.10 -3.28 3.27 -9.40 -0.03 -3.31 16 13 H 0.07 2.46 8.01 -2.39 -0.02 2.44 16 14 C -0.13 -3.36 9.30 71.98 0.67 -2.69 16 15 C 0.17 6.50 3.07 46.18 0.14 6.64 16 16 H 0.08 2.76 7.96 -2.39 -0.02 2.74 16 17 N -0.72 -34.03 5.16 -317.32 -1.64 -35.67 16 18 C -0.24 -12.71 9.96 84.03 0.84 -11.87 16 19 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 20 C -0.07 -3.63 5.50 84.86 0.47 -3.16 16 21 N -0.97 -57.06 13.06 21.65 0.28 -56.78 16 22 Si 0.97 44.09 29.55 68.60 2.03 46.12 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 C 0.09 3.12 6.23 86.73 0.54 3.66 16 27 C 0.19 5.12 7.28 22.65 0.16 5.28 16 28 F -0.12 -3.44 16.83 44.97 0.76 -2.68 16 29 C -0.24 -4.54 8.99 22.37 0.20 -4.34 16 30 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.42 7.65 -2.38 -0.02 0.41 16 32 H 0.08 0.33 7.64 -2.39 -0.02 0.32 16 33 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.08 2.34 8.04 -2.39 -0.02 2.32 16 35 H 0.09 2.37 8.04 -2.38 -0.02 2.35 16 36 H 0.07 1.63 8.11 -2.39 -0.02 1.61 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.38 19.45 7.76 -92.71 -0.72 18.73 16 40 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 41 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 42 H 0.05 2.12 8.03 -2.39 -0.02 2.10 16 43 H 0.19 2.14 6.27 -2.91 -0.02 2.12 16 Total: -1.00 -69.34 373.26 4.46 -64.89 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.34 Total: 25.71 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 5.67 Total: 14.84 kcal Atomic # 7 Polarization: -111.84 SS G_CDS: -4.07 Total: -115.91 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.02 Total: -29.50 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 1.51 Total: -6.15 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.34 4.46 -64.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939173347.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.635 kcal (2) G-P(sol) polarization free energy of solvation -69.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds