Wall clock time and date at job start Sat Apr 11 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47605 * 2 1 4 4 N 1.29431 * 124.80679 * 90.27699 * 3 2 1 5 5 C 1.30941 * 117.36291 * 180.18267 * 4 3 2 6 6 C 1.35668 * 114.19264 * 359.55476 * 5 4 3 7 7 C 1.46676 * 126.13218 * 180.23235 * 6 5 4 8 8 O 1.21693 * 120.00056 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00450 * 180.02562 * 7 6 5 10 10 C 1.46496 * 120.00359 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47007 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47362 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00131 * 66.04657 * 12 11 10 14 14 C 1.46903 * 111.00558 * 190.00275 * 12 11 10 15 15 C 1.50698 * 109.47463 * 170.00091 * 14 12 11 16 16 O 1.21296 * 119.99789 * 359.97438 * 15 14 12 17 17 N 1.34771 * 120.00293 * 179.97438 * 15 14 12 18 18 C 1.37095 * 120.00151 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00191 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99821 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99931 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99830 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47183 * 59.99755 * 22 20 18 24 24 H 1.48495 * 109.47116 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.46967 * 300.00026 * 22 20 18 26 26 S 1.70957 * 124.80265 * 269.99892 * 3 2 1 27 27 H 1.08998 * 109.46740 * 60.00532 * 1 2 3 28 28 H 1.09000 * 109.47198 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47059 * 300.00588 * 1 2 3 30 30 H 1.09003 * 109.47499 * 239.99256 * 2 1 3 31 31 H 1.09010 * 109.46897 * 119.99800 * 2 1 3 32 32 H 1.08002 * 122.90653 * 179.83136 * 5 4 3 33 33 H 0.97001 * 119.99601 * 359.97438 * 9 7 6 34 34 H 1.08999 * 109.47217 * 299.99453 * 10 9 7 35 35 H 1.09000 * 109.47126 * 59.99957 * 10 9 7 36 36 H 1.09003 * 109.47651 * 299.99872 * 11 10 9 37 37 H 1.09006 * 109.47283 * 59.99857 * 11 10 9 38 38 H 1.08998 * 109.46815 * 60.00077 * 13 12 11 39 39 H 1.08998 * 109.47521 * 180.02562 * 13 12 11 40 40 H 1.09006 * 109.46815 * 300.00137 * 13 12 11 41 41 H 1.08997 * 109.46799 * 289.99848 * 14 12 11 42 42 H 1.09000 * 109.47167 * 49.99600 * 14 12 11 43 43 H 0.97005 * 119.99776 * 359.97438 * 17 15 14 44 44 H 0.97003 * 119.99652 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.2836 2.1156 1.0627 5 6 2.7122 3.3412 0.8931 6 6 2.8425 3.7098 -0.4060 7 6 3.3041 5.0141 -0.8928 8 8 3.6129 5.8848 -0.1006 9 7 3.3864 5.2486 -2.2175 10 6 3.8480 6.5512 -2.7036 11 6 3.8485 6.5535 -4.2336 12 7 4.3107 7.8598 -4.7212 13 6 5.7196 8.0840 -4.3709 14 6 4.1020 7.9851 -6.1699 15 6 4.3544 9.4094 -6.5925 16 8 4.6759 10.2388 -5.7679 17 7 4.2228 9.7617 -7.8867 18 6 4.4518 11.0576 -8.2711 19 1 4.7373 11.7962 -7.5367 20 6 4.3156 11.4209 -9.6053 21 7 3.9677 10.5222 -10.4988 22 14 4.6283 13.1865 -10.1292 23 1 6.0261 13.5614 -9.7961 24 1 4.4180 13.3129 -11.5937 25 1 3.6901 14.0885 -9.4141 26 16 2.3578 2.3406 -1.4038 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 2.9463 4.0001 1.7162 33 1 3.1406 4.5545 -2.8489 34 1 3.1809 7.3323 -2.3390 35 1 4.8585 6.7374 -2.3400 36 1 4.5158 5.7724 -4.5980 37 1 2.8380 6.3670 -4.5976 38 1 6.3344 7.3051 -4.8219 39 1 6.0360 9.0583 -4.7433 40 1 5.8336 8.0551 -3.2872 41 1 4.7907 7.3230 -6.6947 42 1 3.0761 7.7098 -6.4143 43 1 3.9660 9.0983 -8.5462 44 1 3.8723 10.7760 -11.4302 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753074580.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:13 Heat of formation + Delta-G solvation = -22.829612 kcal Electronic energy + Delta-G solvation = -25546.378031 eV Core-core repulsion = 21625.805239 eV Total energy + Delta-G solvation = -3920.572792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.58540 -39.54421 -38.64916 -36.83846 -34.79183 -34.57208 -33.82774 -31.27647 -30.84493 -29.26566 -27.73626 -26.58540 -25.33597 -24.09199 -23.31669 -21.99128 -21.35074 -19.87574 -19.19445 -18.81218 -17.87016 -17.28448 -16.49697 -16.12725 -15.90396 -15.60750 -15.32923 -14.95995 -14.94937 -14.64203 -14.42103 -14.25598 -14.00825 -13.87344 -13.52275 -13.34897 -13.09059 -12.83464 -12.33328 -12.15562 -12.09261 -11.89807 -11.77323 -11.54288 -11.44474 -11.29953 -11.10382 -10.93994 -10.56869 -10.44593 -10.22437 -10.16943 -10.00174 -9.48541 -9.46634 -9.29212 -8.50638 -8.00875 -7.91597 -6.42850 -3.83616 -0.23218 0.65562 1.07064 2.02586 2.67784 2.83919 3.19703 3.25487 3.30026 3.50817 3.88459 4.00924 4.24513 4.29698 4.41311 4.57119 4.59230 4.74399 4.84281 4.94024 5.01108 5.08813 5.22454 5.23123 5.32860 5.33376 5.55817 5.59594 5.64969 5.65639 5.76922 5.82299 5.89246 5.96344 6.06640 6.25387 6.53152 7.00582 7.14681 7.18446 7.28208 7.54230 7.78164 8.04941 8.60511 9.17021 9.52855 10.04770 10.74770 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028026 B = 0.001606 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.848165 B =17426.555660 C =18139.442367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C 0.065 3.935 4 N -0.478 5.478 5 C 0.122 3.878 6 C -0.293 4.293 7 C 0.596 3.404 8 O -0.520 6.520 9 N -0.722 5.722 10 C 0.122 3.878 11 C 0.044 3.956 12 N -0.514 5.514 13 C 0.017 3.983 14 C 0.047 3.953 15 C 0.443 3.557 16 O -0.576 6.576 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.273 1.273 26 S 0.163 5.837 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.190 0.810 33 H 0.397 0.603 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.016 0.984 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.247 -25.030 15.622 29.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 C -0.210 4.210 4 N -0.191 5.191 5 C -0.035 4.035 6 C -0.417 4.417 7 C 0.381 3.619 8 O -0.398 6.398 9 N -0.374 5.374 10 C -0.001 4.001 11 C -0.085 4.085 12 N -0.239 5.239 13 C -0.130 4.130 14 C -0.084 4.084 15 C 0.228 3.772 16 O -0.460 6.460 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 S 0.420 5.580 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.207 0.793 33 H 0.231 0.769 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.098 0.902 38 H 0.034 0.966 39 H 0.117 0.883 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.252 -23.885 16.148 29.306 hybrid contribution 0.523 0.032 -0.819 0.972 sum -4.729 -23.853 15.330 28.746 Atomic orbital electron populations 1.21793 0.92957 1.03008 1.02958 1.20347 0.97118 0.87021 1.04816 1.27576 1.00526 1.02009 0.90927 1.66234 1.15632 1.06150 1.31123 1.22228 0.94530 0.91143 0.95586 1.25778 1.17586 1.00385 0.97923 1.16645 0.77840 0.84945 0.82490 1.90881 1.49010 1.44805 1.55078 1.45826 1.68207 1.17120 1.06233 1.21428 1.01217 0.83613 0.93886 1.22255 1.01187 0.91249 0.93849 1.61439 1.21180 1.27718 1.13517 1.22641 0.86490 1.03112 1.00803 1.21871 1.01894 0.97124 0.87527 1.19691 0.84906 0.89199 0.83371 1.90496 1.52240 1.52041 1.51252 1.41849 1.60526 1.11140 1.06501 1.19659 1.43692 0.86303 0.93272 0.87925 1.25257 0.97220 0.99874 0.95536 1.69603 1.47735 1.34228 1.02791 0.85913 0.79109 0.81967 0.77210 1.19921 1.20996 1.19872 1.83882 1.58085 1.04388 1.11651 0.92161 0.90981 0.91741 0.89186 0.88271 0.79345 0.76932 0.89723 0.90685 0.94457 0.90173 0.96567 0.88286 0.91816 0.93309 0.89293 0.77504 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.89 37.16 0.37 -0.17 16 2 C -0.05 -0.21 6.51 -27.89 -0.18 -0.39 16 3 C 0.06 0.46 6.64 -13.29 -0.09 0.37 16 4 N -0.48 -4.49 10.51 -11.50 -0.12 -4.61 16 5 C 0.12 1.20 11.09 -18.85 -0.21 0.99 16 6 C -0.29 -2.84 6.48 -37.10 -0.24 -3.08 16 7 C 0.60 7.06 7.79 -12.85 -0.10 6.96 16 8 O -0.52 -8.05 16.87 5.20 0.09 -7.97 16 9 N -0.72 -7.21 5.55 -61.62 -0.34 -7.55 16 10 C 0.12 1.43 5.60 -4.05 -0.02 1.41 16 11 C 0.04 0.51 5.07 -3.83 -0.02 0.49 16 12 N -0.51 -8.24 4.50 -244.37 -1.10 -9.34 16 13 C 0.02 0.27 8.96 60.06 0.54 0.81 16 14 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 15 C 0.44 10.26 7.47 -10.99 -0.08 10.18 16 16 O -0.58 -15.34 13.91 5.54 0.08 -15.26 16 17 N -0.56 -14.06 5.29 -10.96 -0.06 -14.11 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 22 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 S 0.16 1.07 22.31 -107.50 -2.40 -1.33 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.10 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.19 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.40 2.93 7.66 -40.82 -0.31 2.61 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.95 6.55 -51.93 -0.34 0.61 16 36 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 37 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 38 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.10 1.93 5.83 -51.93 -0.30 1.63 16 40 H 0.06 0.91 6.47 -51.93 -0.34 0.58 16 41 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 42 H 0.09 1.35 7.93 -51.93 -0.41 0.94 16 43 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 44 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 386.02 15.07 5.82 5.82 Total: -1.00 -33.79 386.02 -8.81 -42.60 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.17 Total: 8.94 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: -0.31 Total: 10.45 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -0.90 Total: -59.15 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: 0.16 Total: -23.23 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.40 Total: -1.33 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.79 -8.81 -42.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753074580.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.772 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds