Wall clock time and date at job start Sat Apr 11 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29949 * 126.29138 * 2 1 4 4 O 1.21294 * 110.25333 * 179.69086 * 3 2 1 5 5 C 1.33643 * 109.81076 * 0.46596 * 4 3 2 6 6 C 1.50703 * 126.55074 * 179.80098 * 5 4 3 7 7 N 1.46904 * 109.47157 * 269.69115 * 6 5 4 8 8 C 1.48539 * 110.99743 * 56.01088 * 7 6 5 9 9 C 1.54937 * 103.22457 * 159.71859 * 8 7 6 10 10 C 1.54600 * 102.92202 * 322.58632 * 9 8 7 11 11 C 1.47902 * 110.99856 * 173.40605 * 7 6 5 12 12 H 1.09008 * 110.08037 * 333.60140 * 11 7 6 13 13 C 1.52999 * 109.91638 * 94.80151 * 11 7 6 14 14 N 1.46495 * 109.47189 * 296.95628 * 13 11 7 15 15 C 1.34777 * 119.99771 * 173.78846 * 14 13 11 16 16 O 1.21276 * 120.00231 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99884 * 179.97438 * 15 14 13 18 18 S 1.81006 * 109.46924 * 179.97438 * 17 15 14 19 19 C 1.76202 * 99.99641 * 179.97438 * 18 17 15 20 20 H 1.08002 * 120.00113 * 359.97438 * 19 18 17 21 21 C 1.38803 * 119.99720 * 179.97438 * 19 18 17 22 22 N 1.31626 * 120.00046 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99940 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46974 * 60.00292 * 23 21 19 25 25 H 1.48491 * 109.47124 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47183 * 300.00347 * 23 21 19 27 27 N 1.31129 * 106.89456 * 359.54566 * 5 4 3 28 28 H 1.09004 * 109.47047 * 270.02519 * 1 2 3 29 29 H 1.08998 * 109.47421 * 30.01796 * 1 2 3 30 30 H 1.09000 * 109.47800 * 150.02129 * 1 2 3 31 31 H 1.09002 * 109.46935 * 149.69291 * 6 5 4 32 32 H 1.09008 * 109.47001 * 29.69248 * 6 5 4 33 33 H 1.09001 * 110.66390 * 41.28808 * 8 7 6 34 34 H 1.08991 * 110.80695 * 278.22261 * 8 7 6 35 35 H 1.08997 * 110.72454 * 204.22392 * 9 8 7 36 36 H 1.09000 * 110.87329 * 81.01482 * 9 8 7 37 37 H 1.08998 * 110.30893 * 263.03781 * 10 9 8 38 38 H 1.09003 * 110.30513 * 140.87103 * 10 9 8 39 39 H 1.08993 * 109.46807 * 176.95172 * 13 11 7 40 40 H 1.08997 * 109.46705 * 56.95508 * 13 11 7 41 41 H 0.96996 * 120.00423 * 353.77988 * 14 13 11 42 42 H 1.08994 * 109.46909 * 59.99865 * 17 15 14 43 43 H 1.09000 * 109.46997 * 299.99296 * 17 15 14 44 44 H 0.97002 * 120.00010 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7123 0.0061 5 6 3.5298 -0.6212 0.0006 6 6 4.7969 -1.4371 0.0009 7 7 5.2089 -1.7023 -1.3840 8 6 5.3662 -0.4361 -2.1443 9 6 6.2730 -0.8460 -3.3318 10 6 7.2517 -1.8545 -2.6874 11 6 6.5306 -2.3648 -1.4261 12 1 7.1075 -2.1058 -0.5381 13 6 6.3508 -3.8820 -1.5062 14 7 5.6779 -4.3587 -0.2954 15 6 5.3001 -5.6488 -0.1980 16 8 5.5169 -6.4149 -1.1128 17 6 4.6084 -6.1393 1.0478 18 16 4.2307 -7.9010 0.8742 19 6 3.4508 -8.2009 2.4255 20 1 3.3373 -7.3967 3.1373 21 6 2.9822 -9.4709 2.7327 22 7 3.1210 -10.4512 1.8653 23 14 2.1560 -9.7890 4.3775 24 1 0.9560 -8.9235 4.5043 25 1 1.7494 -11.2149 4.4596 26 1 3.1063 -9.4817 5.4764 27 7 2.3029 -1.0841 0.0003 28 1 -0.3633 0.0005 1.0277 29 1 -0.3634 0.8898 -0.5141 30 1 -0.3635 -0.8901 -0.5135 31 1 4.6204 -2.3820 0.5148 32 1 5.5841 -0.8853 0.5149 33 1 5.8537 0.3224 -1.5318 34 1 4.4014 -0.0774 -2.5029 35 1 6.8110 0.0178 -3.7224 36 1 5.6898 -1.3237 -4.1190 37 1 8.1829 -1.3573 -2.4158 38 1 7.4483 -2.6804 -3.3710 39 1 7.3269 -4.3595 -1.5914 40 1 5.7473 -4.1307 -2.3792 41 1 5.5043 -3.7460 0.4362 42 1 3.6829 -5.5822 1.1927 43 1 5.2608 -5.9904 1.9082 44 1 2.7932 -11.3386 2.0798 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753098856.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:14 Heat of formation + Delta-G solvation = 14.054604 kcal Electronic energy + Delta-G solvation = -27009.635366 eV Core-core repulsion = 23090.661994 eV Total energy + Delta-G solvation = -3918.973372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.70646 -41.00706 -39.90801 -37.18280 -35.69005 -35.10650 -34.56715 -32.61816 -31.90450 -30.17565 -29.94553 -27.79151 -27.64801 -25.75331 -24.65381 -22.82780 -21.98605 -21.85211 -21.17105 -19.78700 -19.29247 -18.57708 -17.82101 -17.61863 -17.07193 -16.86393 -16.69925 -16.22093 -16.04741 -15.60482 -15.39523 -15.01664 -14.65262 -14.55025 -14.51443 -14.38937 -13.94978 -13.81909 -13.54856 -13.27929 -13.17189 -13.14858 -12.85501 -12.73386 -12.64754 -12.61412 -12.40364 -12.27708 -12.09467 -12.06402 -11.72717 -11.45842 -11.11459 -11.03690 -10.89042 -10.25696 -10.05121 -9.59011 -8.64106 -8.32809 -6.10481 -0.00552 1.11077 1.28633 1.44592 1.47914 1.57592 1.63451 1.67706 2.27948 2.33856 2.59657 2.78346 2.98156 3.01084 3.33672 3.60048 3.61660 3.78746 3.92005 4.04034 4.08206 4.21589 4.25448 4.32024 4.35601 4.48462 4.52452 4.52833 4.55737 4.63153 4.65565 4.76596 4.84164 4.88140 4.98089 5.05442 5.06946 5.20497 5.27763 5.43036 5.47942 5.73785 5.77669 6.21234 6.50285 7.07166 7.08285 7.28484 8.76206 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010294 B = 0.002888 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2719.275765 B = 9694.164713 C =11945.054015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.159 3.841 3 N -0.403 5.403 4 O 0.077 5.923 5 C 0.194 3.806 6 C 0.134 3.866 7 N -0.525 5.525 8 C 0.032 3.968 9 C -0.117 4.117 10 C -0.118 4.118 11 C 0.066 3.934 12 H 0.097 0.903 13 C 0.134 3.866 14 N -0.709 5.709 15 C 0.534 3.466 16 O -0.565 6.565 17 C -0.131 4.131 18 S -0.149 6.149 19 C -0.547 4.547 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.263 1.263 25 H -0.279 1.279 26 H -0.261 1.261 27 N -0.495 5.495 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.053 0.947 41 H 0.407 0.593 42 H 0.103 0.897 43 H 0.111 0.889 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.269 28.634 -4.482 29.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.113 4.113 3 N -0.113 5.113 4 O 0.020 5.980 5 C -0.027 4.027 6 C 0.005 3.995 7 N -0.252 5.252 8 C -0.095 4.095 9 C -0.155 4.155 10 C -0.156 4.156 11 C -0.042 4.042 12 H 0.115 0.885 13 C 0.010 3.990 14 N -0.365 5.365 15 C 0.320 3.680 16 O -0.444 6.444 17 C -0.282 4.282 18 S 0.078 5.922 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.819 3.181 24 H -0.188 1.188 25 H -0.204 1.204 26 H -0.185 1.185 27 N -0.229 5.229 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.246 0.754 42 H 0.122 0.878 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.571 27.392 -6.266 28.646 hybrid contribution -0.480 0.838 2.354 2.545 sum 5.091 28.230 -3.912 28.951 Atomic orbital electron populations 1.20329 0.80955 1.05550 1.05484 1.26568 1.02064 0.83013 0.99648 1.74603 0.89762 1.24300 1.22634 1.85249 1.22171 1.24872 1.65755 1.28872 0.97109 0.81910 0.94823 1.21087 0.87709 0.97972 0.92767 1.64771 1.28718 1.21582 1.10160 1.23319 0.99830 0.90546 0.95811 1.22442 0.96811 0.99605 0.96692 1.22397 0.98780 0.99527 0.94921 1.22692 0.88300 0.91696 1.01498 0.88508 1.21553 0.97025 0.93499 0.86915 1.45862 1.60954 1.08959 1.20704 1.20003 0.77873 0.82637 0.87529 1.90686 1.56075 1.56334 1.41280 1.23380 1.03913 1.01343 0.99547 1.85555 1.76875 1.03974 1.25820 1.23179 1.44579 0.99077 1.02688 0.89998 1.26113 0.96103 0.94625 1.02240 1.70177 1.45230 1.02149 1.37207 0.85024 0.78675 0.77453 0.76976 1.18802 1.20373 1.18530 1.72006 1.00791 1.30060 1.20078 0.87933 0.88087 0.88680 0.86571 0.86511 0.90869 0.92320 0.88636 0.91914 0.88057 0.90384 0.90659 0.92803 0.75432 0.87844 0.87056 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.51 71.23 0.75 -0.23 16 2 C 0.16 3.56 8.22 138.46 1.14 4.70 16 3 N -0.40 -9.12 12.16 -60.34 -0.73 -9.85 16 4 O 0.08 1.52 11.17 74.84 0.84 2.35 16 5 C 0.19 3.74 6.92 88.38 0.61 4.36 16 6 C 0.13 1.73 5.20 85.56 0.44 2.18 16 7 N -0.53 -7.61 4.94 -862.57 -4.26 -11.87 16 8 C 0.03 0.38 5.56 86.65 0.48 0.86 16 9 C -0.12 -1.13 7.06 31.80 0.22 -0.90 16 10 C -0.12 -1.01 6.57 31.47 0.21 -0.80 16 11 C 0.07 0.76 2.70 45.06 0.12 0.88 16 12 H 0.10 0.62 7.64 -2.38 -0.02 0.60 16 13 C 0.13 2.72 5.12 86.38 0.44 3.16 16 14 N -0.71 -17.23 5.32 -463.08 -2.46 -19.69 16 15 C 0.53 19.76 7.85 87.66 0.69 20.45 16 16 O -0.57 -26.40 15.85 -3.02 -0.05 -26.44 16 17 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 18 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 19 C -0.55 -31.60 9.50 67.96 0.65 -30.95 16 20 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -56.48 13.22 21.65 0.29 -56.19 16 23 Si 1.00 43.92 29.55 68.60 2.03 45.95 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 27 N -0.49 -12.26 11.55 -303.21 -3.50 -15.76 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.12 1.60 5.52 -2.39 -0.01 1.59 16 32 H 0.12 0.62 7.92 -2.38 -0.02 0.60 16 33 H 0.07 0.60 8.02 -2.39 -0.02 0.58 16 34 H 0.06 0.94 7.93 -2.39 -0.02 0.92 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.08 0.79 7.69 -2.39 -0.02 0.77 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.05 1.41 8.12 -2.39 -0.02 1.39 16 41 H 0.41 7.19 5.61 -92.71 -0.52 6.67 16 42 H 0.10 3.86 8.14 -2.40 -0.02 3.84 16 43 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 44 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -83.70 380.33 -1.86 -85.56 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.51 Total: 15.36 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 6.66 Total: 0.16 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -10.68 Total: -113.37 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.79 Total: -24.09 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -83.70 -1.86 -85.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753098856.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.615 kcal (2) G-P(sol) polarization free energy of solvation -83.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds