Wall clock time and date at job start Sat Apr 11 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29950 * 126.29347 * 2 1 4 4 O 1.21298 * 110.25472 * 179.68354 * 3 2 1 5 5 C 1.33637 * 109.81257 * 0.46807 * 4 3 2 6 6 C 1.50700 * 126.55422 * 179.79878 * 5 4 3 7 7 N 1.46900 * 109.46994 * 269.69063 * 6 5 4 8 8 C 1.48558 * 111.00013 * 279.99351 * 7 6 5 9 9 C 1.54383 * 104.59388 * 200.96195 * 8 7 6 10 10 C 1.54263 * 105.05863 * 23.85375 * 9 8 7 11 11 C 1.48566 * 110.99427 * 164.57413 * 7 6 5 12 12 H 1.08996 * 110.51242 * 40.21492 * 11 7 6 13 13 C 1.52998 * 110.41076 * 277.81568 * 11 7 6 14 14 N 1.46504 * 109.47015 * 179.69978 * 13 11 7 15 15 C 1.34773 * 120.00007 * 174.98154 * 14 13 11 16 16 O 1.21276 * 120.00075 * 0.02562 * 15 14 13 17 17 C 1.50710 * 119.99913 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.46983 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99862 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00110 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99968 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00000 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00150 * 0.27520 * 21 19 18 24 24 H 1.48500 * 109.47047 * 269.72621 * 23 21 19 25 25 H 1.48501 * 109.47026 * 29.72281 * 23 21 19 26 26 H 1.48501 * 109.47083 * 149.72470 * 23 21 19 27 27 N 1.31135 * 106.89338 * 359.53920 * 5 4 3 28 28 H 1.08996 * 109.47087 * 270.02631 * 1 2 3 29 29 H 1.09005 * 109.46630 * 30.02574 * 1 2 3 30 30 H 1.08997 * 109.46831 * 150.02451 * 1 2 3 31 31 H 1.09000 * 109.47074 * 149.68744 * 6 5 4 32 32 H 1.09004 * 109.46849 * 29.68866 * 6 5 4 33 33 H 1.08993 * 110.41226 * 82.18305 * 8 7 6 34 34 H 1.09001 * 110.50933 * 319.79036 * 8 7 6 35 35 H 1.08991 * 110.32542 * 264.95905 * 9 8 7 36 36 H 1.08998 * 110.41171 * 142.78744 * 9 8 7 37 37 H 1.09004 * 110.32180 * 241.10476 * 10 9 8 38 38 H 1.08999 * 110.32493 * 118.89791 * 10 9 8 39 39 H 1.08999 * 109.46816 * 59.70396 * 13 11 7 40 40 H 1.09001 * 109.47184 * 299.70003 * 13 11 7 41 41 H 0.97001 * 119.99742 * 354.98272 * 14 13 11 42 42 H 1.08997 * 109.46883 * 60.00079 * 17 15 14 43 43 H 1.09002 * 109.46680 * 299.99557 * 17 15 14 44 44 H 0.97003 * 119.99658 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0474 0.0000 4 8 3.4419 0.7123 0.0063 5 6 3.5299 -0.6212 0.0008 6 6 4.7970 -1.4371 0.0013 7 7 5.2090 -1.7024 -1.3836 8 6 4.4281 -2.8241 -1.9657 9 6 5.2914 -3.3300 -3.1415 10 6 6.7318 -2.9002 -2.7951 11 6 6.6178 -2.1708 -1.4392 12 1 6.8244 -2.8584 -0.6191 13 6 7.5781 -0.9806 -1.3912 14 7 8.9597 -1.4656 -1.4401 15 6 9.9798 -0.5879 -1.5121 16 8 9.7542 0.6035 -1.5360 17 6 11.4010 -1.0868 -1.5629 18 16 12.5324 0.3230 -1.6545 19 6 14.0758 -0.5258 -1.7002 20 1 14.0996 -1.6051 -1.6700 21 6 15.2610 0.1926 -1.7750 22 7 16.4140 -0.4415 -1.8097 23 14 15.2203 2.0597 -1.8196 24 1 15.1490 2.5197 -3.2297 25 1 14.0286 2.5466 -1.0792 26 1 16.4508 2.5969 -1.1852 27 7 2.3030 -1.0841 0.0005 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 4.6205 -2.3819 0.5153 32 1 5.5842 -0.8853 0.5152 33 1 3.4637 -2.4682 -2.3278 34 1 4.2884 -3.6151 -1.2288 35 1 4.9713 -2.8648 -4.0737 36 1 5.2287 -4.4154 -3.2196 37 1 7.1188 -2.2240 -3.5574 38 1 7.3757 -3.7747 -2.7015 39 1 7.4209 -0.4241 -0.4674 40 1 7.3915 -0.3286 -2.2446 41 1 9.1401 -2.4185 -1.4206 42 1 11.5335 -1.7172 -2.4421 43 1 11.6150 -1.6661 -0.6647 44 1 17.2423 0.0607 -1.8616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753098857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:17 Heat of formation + Delta-G solvation = 37.496621 kcal Electronic energy + Delta-G solvation = -26279.396308 eV Core-core repulsion = 22361.439458 eV Total energy + Delta-G solvation = -3917.956850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.90524 -40.10473 -38.92780 -36.42551 -34.92055 -34.17770 -32.44132 -32.02055 -30.86516 -29.58022 -28.81913 -27.17747 -25.65746 -24.95690 -23.85432 -22.29781 -21.25279 -20.78754 -20.37933 -18.48344 -17.90848 -17.77226 -16.81954 -16.58241 -16.16514 -15.66101 -15.37342 -15.10071 -14.95722 -14.81967 -14.35307 -14.04471 -14.00277 -13.74517 -13.47929 -13.28604 -13.09633 -12.80512 -12.77836 -12.73060 -12.33966 -12.03291 -11.87387 -11.75588 -11.68344 -11.40204 -11.28789 -11.26392 -11.00699 -10.91812 -10.61082 -10.29533 -9.86080 -9.55693 -9.23778 -9.03335 -8.97767 -8.50236 -6.92077 -6.29286 -4.01056 0.76464 1.81567 2.37950 2.71757 2.96630 3.09932 3.25949 3.33526 3.50483 3.51739 3.67145 3.77750 4.06685 4.16577 4.33226 4.43171 4.49437 4.61687 4.69301 4.73744 4.76075 4.85628 4.92736 5.00056 5.01713 5.09921 5.17213 5.20216 5.30285 5.36314 5.48125 5.49615 5.57684 5.60820 5.68207 5.73401 5.76883 5.79374 5.99812 6.21608 6.22420 6.50621 7.56579 7.82736 7.93696 8.40967 8.47449 9.17033 10.79847 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020893 B = 0.001967 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.856793 B =14231.016125 C =15266.556543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.164 3.836 3 N -0.383 5.383 4 O 0.089 5.911 5 C 0.199 3.801 6 C 0.130 3.870 7 N -0.501 5.501 8 C 0.036 3.964 9 C -0.124 4.124 10 C -0.121 4.121 11 C 0.056 3.944 12 H 0.068 0.932 13 C 0.133 3.867 14 N -0.736 5.736 15 C 0.532 3.468 16 O -0.516 6.516 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.235 1.235 26 H -0.274 1.274 27 N -0.481 5.481 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.399 0.601 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.561 -8.574 2.537 31.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.108 4.108 3 N -0.091 5.091 4 O 0.030 5.970 5 C -0.022 4.022 6 C 0.000 4.000 7 N -0.227 5.227 8 C -0.092 4.092 9 C -0.162 4.162 10 C -0.159 4.159 11 C -0.052 4.052 12 H 0.086 0.914 13 C 0.009 3.991 14 N -0.391 5.391 15 C 0.317 3.683 16 O -0.390 6.390 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.159 1.159 26 H -0.200 1.200 27 N -0.216 5.216 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.232 0.768 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -31.474 -5.538 2.212 32.034 hybrid contribution 0.814 -1.889 0.483 2.113 sum -30.660 -7.428 2.694 31.661 Atomic orbital electron populations 1.20128 0.82958 1.04666 1.04256 1.25889 1.00576 0.83549 1.00828 1.74680 0.89442 1.23968 1.21024 1.85329 1.22163 1.24617 1.64873 1.28441 0.96323 0.82270 0.95206 1.20690 0.89273 0.97703 0.92297 1.65057 1.02993 1.39291 1.15353 1.23205 0.97774 0.91491 0.96707 1.22298 0.94525 1.00888 0.98506 1.22396 0.97082 1.00336 0.96100 1.22855 0.87749 0.95798 0.98826 0.91411 1.21132 0.79733 0.95016 1.03249 1.45852 1.05485 1.10008 1.77790 1.20256 0.86404 0.86311 0.75304 1.90718 1.84966 1.15833 1.47507 1.23276 0.93836 1.04561 1.05779 1.84823 1.00354 1.09154 1.97178 1.22316 0.89647 0.96369 1.58603 0.89391 1.24712 0.94294 0.99118 0.93175 1.69942 0.97447 1.36350 1.47950 0.86739 0.79838 0.85222 0.80085 1.19206 1.15882 1.19954 1.71872 0.99678 1.29556 1.20502 0.89360 0.89491 0.89091 0.89080 0.86556 0.89818 0.92808 0.90749 0.90879 0.90009 0.90535 0.91657 0.90134 0.76766 0.88483 0.88472 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.16 1.60 8.22 -156.37 -1.28 0.31 16 3 N -0.38 -4.44 12.16 30.90 0.38 -4.06 16 4 O 0.09 0.99 11.31 18.12 0.20 1.20 16 5 C 0.20 1.82 7.85 -13.06 -0.10 1.72 16 6 C 0.13 0.84 5.45 -4.98 -0.03 0.81 16 7 N -0.50 -3.63 4.97 -223.57 -1.11 -4.74 16 8 C 0.04 0.23 6.26 -2.18 -0.01 0.21 16 9 C -0.12 -0.71 7.00 -25.35 -0.18 -0.89 16 10 C -0.12 -0.76 6.23 -25.35 -0.16 -0.92 16 11 C 0.06 0.37 2.32 -66.07 -0.15 0.22 16 12 H 0.07 0.35 8.00 -51.93 -0.42 -0.06 16 13 C 0.13 1.32 5.22 -4.04 -0.02 1.30 16 14 N -0.74 -8.23 5.35 -60.29 -0.32 -8.55 16 15 C 0.53 8.91 7.85 -10.98 -0.09 8.82 16 16 O -0.52 -10.84 15.86 5.56 0.09 -10.76 16 17 C -0.12 -2.29 6.16 36.01 0.22 -2.07 16 18 S -0.14 -3.53 18.54 -107.50 -1.99 -5.52 16 19 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 20 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 21 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 23 Si 0.86 21.67 27.74 -169.99 -4.72 16.96 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.23 -5.94 6.73 56.52 0.38 -5.56 16 26 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 27 N -0.48 -4.71 11.55 -9.87 -0.11 -4.82 16 28 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.44 7.65 -51.93 -0.40 0.04 16 32 H 0.12 0.63 7.07 -51.93 -0.37 0.26 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.29 7.68 -51.93 -0.40 -0.11 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.64 7.82 -51.93 -0.41 0.23 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.68 7.25 -51.93 -0.38 0.30 16 40 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 41 H 0.40 3.24 8.36 -40.82 -0.34 2.90 16 42 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.10 1.65 8.14 -51.91 -0.42 1.23 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -35.79 382.52 -8.76 -44.56 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.50 Total: -2.13 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -1.21 Total: -2.30 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.40 Total: -47.76 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.29 Total: -9.56 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.72 Total: 16.96 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.52 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.79 -8.76 -44.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753098857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.053 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds