Wall clock time and date at job start Sat Apr 11 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29950 * 126.29347 * 2 1 4 4 O 1.21298 * 110.25472 * 179.68354 * 3 2 1 5 5 C 1.33637 * 109.81257 * 0.46807 * 4 3 2 6 6 C 1.50700 * 126.55422 * 179.79878 * 5 4 3 7 7 N 1.46900 * 109.46994 * 269.69063 * 6 5 4 8 8 C 1.48558 * 111.00013 * 279.99351 * 7 6 5 9 9 C 1.54383 * 104.59388 * 200.96195 * 8 7 6 10 10 C 1.54263 * 105.05863 * 23.85375 * 9 8 7 11 11 C 1.48566 * 110.99427 * 164.57413 * 7 6 5 12 12 H 1.08996 * 110.51242 * 40.21492 * 11 7 6 13 13 C 1.52998 * 110.41076 * 277.81568 * 11 7 6 14 14 N 1.46504 * 109.47015 * 179.69978 * 13 11 7 15 15 C 1.34773 * 120.00007 * 174.98154 * 14 13 11 16 16 O 1.21276 * 120.00075 * 0.02562 * 15 14 13 17 17 C 1.50710 * 119.99913 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.46983 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99862 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00110 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99968 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00000 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00150 * 0.27520 * 21 19 18 24 24 H 1.48500 * 109.47047 * 269.72621 * 23 21 19 25 25 H 1.48501 * 109.47026 * 29.72281 * 23 21 19 26 26 H 1.48501 * 109.47083 * 149.72470 * 23 21 19 27 27 N 1.31135 * 106.89338 * 359.53920 * 5 4 3 28 28 H 1.08996 * 109.47087 * 270.02631 * 1 2 3 29 29 H 1.09005 * 109.46630 * 30.02574 * 1 2 3 30 30 H 1.08997 * 109.46831 * 150.02451 * 1 2 3 31 31 H 1.09000 * 109.47074 * 149.68744 * 6 5 4 32 32 H 1.09004 * 109.46849 * 29.68866 * 6 5 4 33 33 H 1.08993 * 110.41226 * 82.18305 * 8 7 6 34 34 H 1.09001 * 110.50933 * 319.79036 * 8 7 6 35 35 H 1.08991 * 110.32542 * 264.95905 * 9 8 7 36 36 H 1.08998 * 110.41171 * 142.78744 * 9 8 7 37 37 H 1.09004 * 110.32180 * 241.10476 * 10 9 8 38 38 H 1.08999 * 110.32493 * 118.89791 * 10 9 8 39 39 H 1.08999 * 109.46816 * 59.70396 * 13 11 7 40 40 H 1.09001 * 109.47184 * 299.70003 * 13 11 7 41 41 H 0.97001 * 119.99742 * 354.98272 * 14 13 11 42 42 H 1.08997 * 109.46883 * 60.00079 * 17 15 14 43 43 H 1.09002 * 109.46680 * 299.99557 * 17 15 14 44 44 H 0.97003 * 119.99658 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0474 0.0000 4 8 3.4419 0.7123 0.0063 5 6 3.5299 -0.6212 0.0008 6 6 4.7970 -1.4371 0.0013 7 7 5.2090 -1.7024 -1.3836 8 6 4.4281 -2.8241 -1.9657 9 6 5.2914 -3.3300 -3.1415 10 6 6.7318 -2.9002 -2.7951 11 6 6.6178 -2.1708 -1.4392 12 1 6.8244 -2.8584 -0.6191 13 6 7.5781 -0.9806 -1.3912 14 7 8.9597 -1.4656 -1.4401 15 6 9.9798 -0.5879 -1.5121 16 8 9.7542 0.6035 -1.5360 17 6 11.4010 -1.0868 -1.5629 18 16 12.5324 0.3230 -1.6545 19 6 14.0758 -0.5258 -1.7002 20 1 14.0996 -1.6051 -1.6700 21 6 15.2610 0.1926 -1.7750 22 7 16.4140 -0.4415 -1.8097 23 14 15.2203 2.0597 -1.8196 24 1 15.1490 2.5197 -3.2297 25 1 14.0286 2.5466 -1.0792 26 1 16.4508 2.5969 -1.1852 27 7 2.3030 -1.0841 0.0005 28 1 -0.3633 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 4.6205 -2.3819 0.5153 32 1 5.5842 -0.8853 0.5152 33 1 3.4637 -2.4682 -2.3278 34 1 4.2884 -3.6151 -1.2288 35 1 4.9713 -2.8648 -4.0737 36 1 5.2287 -4.4154 -3.2196 37 1 7.1188 -2.2240 -3.5574 38 1 7.3757 -3.7747 -2.7015 39 1 7.4209 -0.4241 -0.4674 40 1 7.3915 -0.3286 -2.2446 41 1 9.1401 -2.4185 -1.4206 42 1 11.5335 -1.7172 -2.4421 43 1 11.6150 -1.6661 -0.6647 44 1 17.2423 0.0607 -1.8616 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753098857.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:16 Heat of formation + Delta-G solvation = 9.044946 kcal Electronic energy + Delta-G solvation = -26280.630065 eV Core-core repulsion = 22361.439458 eV Total energy + Delta-G solvation = -3919.190607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.63766 -40.93787 -39.97042 -37.12980 -35.91025 -34.89159 -34.64753 -32.59074 -31.96437 -30.13610 -29.90352 -27.83978 -27.74326 -25.79077 -24.55750 -22.89534 -22.03128 -21.49059 -21.32971 -19.86503 -19.21363 -18.48121 -17.88280 -17.58207 -17.12878 -16.99640 -16.57034 -16.33295 -15.92913 -15.61311 -15.31414 -15.06716 -14.90443 -14.77463 -14.48729 -14.48496 -13.99698 -13.78800 -13.46340 -13.36376 -13.32618 -13.26440 -13.01113 -12.87793 -12.61664 -12.50386 -12.35306 -12.20942 -12.10701 -11.90915 -11.84692 -11.39178 -11.15191 -11.02728 -10.98569 -10.49580 -10.09654 -9.73412 -8.96607 -8.49668 -6.19736 0.05331 1.01472 1.12586 1.32714 1.48766 1.57161 1.61956 1.75907 2.18450 2.26920 2.59138 2.73686 2.88827 3.00377 3.09120 3.53417 3.58735 3.88250 3.93518 3.97696 4.14392 4.21605 4.24839 4.29145 4.34638 4.48140 4.51452 4.52318 4.55470 4.67710 4.71606 4.76377 4.86790 4.93048 4.97277 5.06527 5.08804 5.21301 5.24932 5.39734 5.72842 5.73043 5.75755 6.13765 6.51455 6.96098 7.10576 7.25152 8.62472 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020893 B = 0.001967 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.856793 B =14231.016125 C =15266.556543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.162 3.838 3 N -0.415 5.415 4 O 0.065 5.935 5 C 0.203 3.797 6 C 0.130 3.870 7 N -0.520 5.520 8 C 0.040 3.960 9 C -0.120 4.120 10 C -0.121 4.121 11 C 0.068 3.932 12 H 0.097 0.903 13 C 0.135 3.865 14 N -0.706 5.706 15 C 0.536 3.464 16 O -0.564 6.564 17 C -0.110 4.110 18 S -0.181 6.181 19 C -0.527 4.527 20 H 0.064 0.936 21 C 0.046 3.954 22 N -0.917 5.917 23 Si 0.912 3.088 24 H -0.264 1.264 25 H -0.237 1.237 26 H -0.260 1.260 27 N -0.492 5.492 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.418 0.582 42 H 0.115 0.885 43 H 0.117 0.883 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.198 -10.094 3.055 33.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.127 5.127 4 O 0.011 5.989 5 C -0.018 4.018 6 C 0.001 3.999 7 N -0.246 5.246 8 C -0.087 4.087 9 C -0.158 4.158 10 C -0.160 4.160 11 C -0.040 4.040 12 H 0.114 0.886 13 C 0.010 3.990 14 N -0.361 5.361 15 C 0.321 3.679 16 O -0.443 6.443 17 C -0.261 4.261 18 S 0.046 5.954 19 C -0.674 4.674 20 H 0.083 0.917 21 C -0.159 4.159 22 N -0.555 5.555 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.161 1.161 26 H -0.185 1.185 27 N -0.228 5.228 28 H 0.122 0.878 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.256 0.744 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -33.113 -7.125 2.731 33.980 hybrid contribution 1.179 -1.564 0.307 1.983 sum -31.933 -8.689 3.038 33.233 Atomic orbital electron populations 1.20338 0.80457 1.05667 1.05549 1.26641 1.02110 0.83141 0.99179 1.74675 0.89813 1.25154 1.23023 1.85286 1.22277 1.25651 1.65674 1.29061 0.97204 0.81808 0.93777 1.20907 0.88399 0.98402 0.92219 1.64939 1.03360 1.40277 1.16028 1.23171 0.96967 0.91422 0.97189 1.22279 0.93911 1.01855 0.97781 1.22416 0.97755 1.00598 0.95183 1.22754 0.86598 0.94504 1.00177 0.88570 1.21183 0.79261 0.96357 1.02158 1.45524 1.04984 1.10361 1.75201 1.19926 0.86583 0.86062 0.75291 1.90711 1.85434 1.17857 1.50254 1.23267 0.93331 1.01849 1.07632 1.84790 1.00307 1.12983 1.97355 1.22465 0.91557 0.95575 1.57828 0.91740 1.25536 0.94111 1.03277 0.93010 1.70017 0.98183 1.38111 1.49155 0.85894 0.80133 0.80289 0.80228 1.18833 1.16091 1.18471 1.71902 0.99963 1.29672 1.21233 0.87793 0.88776 0.87753 0.86719 0.85610 0.91365 0.91216 0.91815 0.89118 0.91894 0.88505 0.91813 0.92489 0.74423 0.86668 0.86526 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.51 71.24 0.75 0.13 16 2 C 0.16 3.05 8.22 138.46 1.14 4.19 16 3 N -0.41 -9.69 12.16 -60.31 -0.73 -10.42 16 4 O 0.07 1.48 11.31 74.89 0.85 2.32 16 5 C 0.20 3.55 7.85 88.38 0.69 4.25 16 6 C 0.13 1.40 5.45 85.56 0.47 1.87 16 7 N -0.52 -6.49 4.97 -861.23 -4.28 -10.77 16 8 C 0.04 0.41 6.26 86.45 0.54 0.95 16 9 C -0.12 -1.09 7.00 31.49 0.22 -0.87 16 10 C -0.12 -1.19 6.23 31.49 0.20 -0.99 16 11 C 0.07 0.71 2.32 45.06 0.10 0.81 16 12 H 0.10 0.54 8.00 -2.39 -0.02 0.52 16 13 C 0.13 2.43 5.22 86.38 0.45 2.88 16 14 N -0.71 -13.98 5.35 -463.05 -2.48 -16.46 16 15 C 0.54 17.13 7.85 87.66 0.69 17.82 16 16 O -0.56 -23.50 15.86 -3.02 -0.05 -23.55 16 17 C -0.11 -3.88 6.16 71.24 0.44 -3.44 16 18 S -0.18 -8.97 18.54 -56.49 -1.05 -10.02 16 19 C -0.53 -30.16 10.04 67.95 0.68 -29.47 16 20 H 0.06 3.87 8.03 -2.91 -0.02 3.84 16 21 C 0.05 2.68 5.50 84.86 0.47 3.15 16 22 N -0.92 -55.31 13.97 21.65 0.30 -55.01 16 23 Si 0.91 44.84 27.74 68.60 1.90 46.74 16 24 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.24 -11.65 6.73 99.48 0.67 -10.98 16 26 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 27 N -0.49 -9.15 11.55 -303.18 -3.50 -12.65 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 30 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.12 0.71 7.65 -2.39 -0.02 0.69 16 32 H 0.13 1.10 7.07 -2.39 -0.02 1.08 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.51 7.68 -2.39 -0.02 0.49 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.06 0.88 7.82 -2.39 -0.02 0.86 16 38 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 1.22 7.25 -2.39 -0.02 1.20 16 40 H 0.06 1.35 8.08 -2.39 -0.02 1.33 16 41 H 0.42 5.19 8.36 -92.71 -0.78 4.41 16 42 H 0.12 3.68 8.14 -2.40 -0.02 3.66 16 43 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 44 H 0.28 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -79.51 382.52 -1.99 -81.50 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.21 Total: 7.05 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 6.84 Total: 1.27 kcal Atomic # 7 Polarization: -94.63 SS G_CDS: -10.69 Total: -105.32 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.80 Total: -21.23 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.74 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.05 Total: -10.02 kcal Total: -79.51 -1.99 -81.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753098857.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.549 kcal (2) G-P(sol) polarization free energy of solvation -79.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds