Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29415 * 125.69518 * 2 1 4 4 N 1.26403 * 116.47269 * 179.74616 * 3 2 1 5 5 C 1.29414 * 116.47458 * 0.53709 * 4 3 2 6 6 C 1.50707 * 125.69670 * 179.76096 * 5 4 3 7 7 O 1.42898 * 109.46719 * 89.69343 * 6 5 4 8 8 C 1.42896 * 114.00127 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47311 * 179.97438 * 8 7 6 10 10 O 1.21273 * 120.00039 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99775 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99698 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46780 * 173.59921 * 12 11 9 14 14 H 1.09003 * 110.00059 * 61.98013 * 13 12 11 15 15 C 1.54322 * 109.77315 * 183.13112 * 13 12 11 16 16 C 1.55154 * 102.86298 * 141.88336 * 15 13 12 17 17 C 1.54911 * 101.58513 * 324.30733 * 16 15 13 18 18 N 1.47019 * 109.88386 * 300.88014 * 13 12 11 19 19 C 1.36932 * 125.64827 * 61.68412 * 18 13 12 20 20 H 1.07998 * 120.00027 * 20.59196 * 19 18 13 21 21 C 1.38815 * 120.00092 * 200.59549 * 19 18 13 22 22 N 1.31626 * 119.99970 * 199.99281 * 21 19 18 23 23 Si 1.86797 * 120.00067 * 19.99260 * 21 19 18 24 24 H 1.48501 * 109.46910 * 270.00337 * 23 21 19 25 25 H 1.48496 * 109.47127 * 150.00367 * 23 21 19 26 26 H 1.48497 * 109.47130 * 30.00115 * 23 21 19 27 27 S 1.71219 * 108.60876 * 359.50278 * 5 4 3 28 28 H 1.09007 * 109.46925 * 269.96005 * 1 2 3 29 29 H 1.08997 * 109.46917 * 29.95817 * 1 2 3 30 30 H 1.08994 * 109.47314 * 149.95775 * 1 2 3 31 31 H 1.09001 * 109.47163 * 329.69643 * 6 5 4 32 32 H 1.09001 * 109.47283 * 209.69508 * 6 5 4 33 33 H 1.09007 * 109.46396 * 60.00380 * 8 7 6 34 34 H 1.08998 * 109.47389 * 300.00913 * 8 7 6 35 35 H 0.97001 * 120.00499 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.47245 * 53.60016 * 12 11 9 37 37 H 1.08994 * 109.47349 * 293.59568 * 12 11 9 38 38 H 1.09002 * 110.92005 * 23.47268 * 15 13 12 39 39 H 1.08998 * 110.74582 * 260.21757 * 15 13 12 40 40 H 1.08994 * 111.00824 * 206.22850 * 16 15 13 41 41 H 1.09001 * 111.00463 * 82.38033 * 16 15 13 42 42 H 1.08997 * 110.36636 * 278.16784 * 17 16 15 43 43 H 1.08999 * 110.37101 * 155.84431 * 17 16 15 44 44 H 0.96996 * 119.99850 * 354.91023 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8484 0.0050 5 6 3.8937 -0.3874 -0.0013 6 6 5.3233 -0.8642 -0.0023 7 8 5.7759 -1.0154 1.3447 8 6 7.1271 -1.4666 1.4567 9 6 7.4967 -1.5894 2.9125 10 8 6.6830 -1.3177 3.7697 11 7 8.7316 -2.0011 3.2618 12 6 9.0907 -2.1210 4.6771 13 6 10.4786 -2.7532 4.7992 14 1 11.2225 -2.1141 4.3236 15 6 10.8311 -2.9551 6.2880 16 6 11.5743 -4.3170 6.2854 17 6 10.8000 -5.0918 5.1900 18 7 10.4810 -4.0801 4.1662 19 6 10.2340 -4.3337 2.8434 20 1 10.3421 -3.5455 2.1131 21 6 9.8445 -5.6040 2.4412 22 7 9.9838 -5.9678 1.1839 23 14 9.1226 -6.7970 3.6842 24 1 10.2150 -7.5959 4.2956 25 1 8.1674 -7.7057 3.0011 26 1 8.4119 -6.0376 4.7441 27 16 2.5061 -1.3905 -0.0010 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3633 0.8903 -0.5132 30 1 -0.3633 -0.8895 -0.5145 31 1 5.9493 -0.1347 -0.5162 32 1 5.3862 -1.8233 -0.5165 33 1 7.7907 -0.7498 0.9730 34 1 7.2270 -2.4382 0.9728 35 1 9.3826 -2.2181 2.5762 36 1 8.3593 -2.7491 5.1856 37 1 9.1006 -1.1317 5.1345 38 1 9.9292 -3.0091 6.8977 39 1 11.4864 -2.1588 6.6410 40 1 11.4848 -4.8129 7.2519 41 1 12.6209 -4.1905 6.0085 42 1 9.8845 -5.5169 5.6014 43 1 11.4263 -5.8765 4.7657 44 1 10.2891 -5.3256 0.5242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753102829.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = 13.702510 kcal Electronic energy + Delta-G solvation = -26958.206244 eV Core-core repulsion = 23039.217604 eV Total energy + Delta-G solvation = -3918.988640 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49877 -39.45974 -38.20499 -37.38005 -33.96815 -33.63286 -32.86735 -30.83611 -29.91704 -29.78024 -27.82398 -26.51525 -24.73732 -24.39884 -23.31748 -21.23378 -20.24868 -19.91461 -19.58163 -19.39638 -17.72897 -17.10851 -16.73651 -16.24477 -15.89877 -15.74224 -15.47717 -14.99273 -14.93439 -14.49411 -14.10376 -13.58843 -13.55429 -13.44792 -13.31591 -13.24144 -12.93103 -12.77857 -12.39632 -12.13700 -12.00083 -11.73720 -11.37696 -11.07387 -10.97183 -10.72013 -10.67832 -10.51425 -10.47949 -10.06454 -10.02536 -9.89610 -9.84009 -9.57840 -9.39329 -9.23499 -8.68952 -8.41134 -7.19448 -6.42154 -3.41319 0.11124 0.64225 1.12194 2.24837 3.03501 3.13238 3.36105 3.48481 3.61253 3.69687 4.10888 4.41462 4.48965 4.57552 4.76715 4.88589 4.99653 5.01668 5.13424 5.17822 5.19954 5.21564 5.23785 5.27455 5.35912 5.40509 5.48510 5.52865 5.79457 5.86451 6.05915 6.06995 6.20656 6.27009 6.34667 6.57143 6.73576 6.78494 6.79185 7.04170 7.55938 8.09124 8.18116 8.31763 8.72693 8.86123 9.42917 10.13976 11.02039 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016538 B = 0.002507 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.674849 B =11166.722581 C =11959.674745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 N -0.263 5.263 4 N -0.240 5.240 5 C -0.017 4.017 6 C 0.141 3.859 7 O -0.355 6.355 8 C 0.045 3.955 9 C 0.512 3.488 10 O -0.542 6.542 11 N -0.699 5.699 12 C 0.118 3.882 13 C 0.144 3.856 14 H 0.045 0.955 15 C -0.123 4.123 16 C -0.130 4.130 17 C 0.105 3.895 18 N -0.601 5.601 19 C -0.322 4.322 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.919 5.919 23 Si 1.064 2.936 24 H -0.293 1.293 25 H -0.300 1.300 26 H -0.285 1.285 27 S 0.201 5.799 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.409 0.591 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.031 0.969 43 H 0.058 0.942 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.241 7.633 -1.566 12.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.301 4.301 3 N -0.103 5.103 4 N -0.080 5.080 5 C -0.296 4.296 6 C 0.060 3.940 7 O -0.273 6.273 8 C -0.035 4.035 9 C 0.296 3.704 10 O -0.419 6.419 11 N -0.354 5.354 12 C -0.008 4.008 13 C 0.036 3.964 14 H 0.063 0.937 15 C -0.162 4.162 16 C -0.169 4.169 17 C -0.020 4.020 18 N -0.328 5.328 19 C -0.450 4.450 20 H 0.089 0.911 21 C -0.213 4.213 22 N -0.559 5.559 23 Si 0.896 3.104 24 H -0.221 1.221 25 H -0.228 1.228 26 H -0.212 1.212 27 S 0.445 5.555 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.249 0.751 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.426 6.639 -0.719 13.234 hybrid contribution 1.039 1.452 -0.714 1.923 sum -10.387 8.091 -1.433 13.244 Atomic orbital electron populations 1.20398 0.83796 1.04707 1.04528 1.29336 1.04511 0.92256 1.04027 1.71483 0.96806 1.26825 1.15156 1.71423 1.06521 1.17089 1.12934 1.28707 1.02334 0.92722 1.05794 1.20680 0.86363 1.00941 0.85996 1.88041 1.27786 1.88044 1.23403 1.22300 0.83756 1.01167 0.96277 1.19980 0.82691 0.77883 0.89828 1.90673 1.49601 1.50004 1.51647 1.45997 1.13473 1.66241 1.09668 1.21932 0.98435 0.99081 0.81382 1.21309 0.93282 0.89240 0.92526 0.93719 1.22517 1.00171 0.97675 0.95816 1.22715 0.99411 0.96039 0.98720 1.22047 0.96760 0.93352 0.89858 1.44851 1.82135 1.00213 1.05576 1.19791 1.45502 0.99042 0.80660 0.91135 1.25937 0.97931 0.97367 1.00095 1.70946 1.47478 1.35238 1.02237 0.83810 0.76795 0.75391 0.74376 1.22104 1.22814 1.21152 1.83793 0.97092 1.10968 1.63691 0.88938 0.88773 0.89579 0.89386 0.90025 0.90128 0.89231 0.75092 0.91849 0.93051 0.91303 0.91434 0.91623 0.91405 0.95110 0.92406 0.92769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.48 36.01 0.38 -0.07 16 2 C -0.02 -0.25 7.53 -13.30 -0.10 -0.35 16 3 N -0.26 -3.77 11.66 32.58 0.38 -3.39 16 4 N -0.24 -3.72 11.66 32.58 0.38 -3.34 16 5 C -0.02 -0.23 7.16 -13.29 -0.10 -0.32 16 6 C 0.14 1.73 6.54 36.01 0.24 1.96 16 7 O -0.36 -5.80 9.86 -55.14 -0.54 -6.34 16 8 C 0.04 0.68 6.42 36.00 0.23 0.91 16 9 C 0.51 9.84 7.91 -10.99 -0.09 9.76 16 10 O -0.54 -12.44 16.48 -14.35 -0.24 -12.67 16 11 N -0.70 -13.03 4.80 -60.30 -0.29 -13.32 16 12 C 0.12 2.16 5.22 -4.04 -0.02 2.14 16 13 C 0.14 2.59 3.38 -66.96 -0.23 2.37 16 14 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.12 -1.83 6.47 -24.90 -0.16 -1.99 16 16 C -0.13 -2.02 7.08 -24.58 -0.17 -2.20 16 17 C 0.10 2.11 4.73 -2.53 -0.01 2.10 16 18 N -0.60 -13.12 2.92 -162.57 -0.47 -13.59 16 19 C -0.32 -7.98 8.74 -15.06 -0.13 -8.11 16 20 H 0.07 1.76 6.31 -52.49 -0.33 1.42 16 21 C -0.01 -0.31 5.45 -17.43 -0.09 -0.41 16 22 N -0.92 -26.30 13.70 55.49 0.76 -25.54 16 23 Si 1.06 25.65 24.73 -169.99 -4.20 21.45 16 24 H -0.29 -6.74 6.83 56.52 0.39 -6.36 16 25 H -0.30 -7.45 7.11 56.52 0.40 -7.04 16 26 H -0.28 -6.71 6.21 56.52 0.35 -6.36 16 27 S 0.20 2.10 23.04 -107.50 -2.48 -0.37 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.41 7.52 5.61 -40.82 -0.23 7.29 16 36 H 0.06 1.31 8.09 -51.93 -0.42 0.89 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.03 0.65 5.24 -51.93 -0.27 0.38 16 43 H 0.06 1.24 6.89 -51.93 -0.36 0.88 16 44 H 0.26 7.32 8.73 -40.82 -0.36 6.96 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -34.79 372.50 -7.66 -42.45 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.31 Total: 3.27 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -0.26 Total: 5.79 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.76 Total: -59.18 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: -0.78 Total: -19.02 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -4.20 Total: 21.45 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.48 Total: -0.37 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.79 -7.66 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753102829.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.150 kcal (2) G-P(sol) polarization free energy of solvation -34.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds