Wall clock time and date at job start Sat Apr 11 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29415 * 125.69480 * 2 1 4 4 N 1.26402 * 116.47631 * 179.97438 * 3 2 1 5 5 C 1.29414 * 116.47512 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.69661 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.46998 * 90.02551 * 6 5 4 8 8 C 1.42896 * 114.00004 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47356 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99902 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00309 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99968 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46939 * 184.66465 * 12 11 9 14 14 H 1.08999 * 109.99497 * 54.37918 * 13 12 11 15 15 C 1.54336 * 109.99295 * 293.34403 * 13 12 11 16 16 C 1.55157 * 103.02203 * 218.66756 * 15 13 12 17 17 C 1.54907 * 101.58122 * 35.30138 * 16 15 13 18 18 N 1.47015 * 109.88218 * 175.47271 * 13 12 11 19 19 C 1.36939 * 125.65217 * 298.39774 * 18 13 12 20 20 H 1.07995 * 119.99444 * 345.99855 * 19 18 13 21 21 C 1.38808 * 120.00115 * 166.00001 * 19 18 13 22 22 N 1.31621 * 120.00392 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99925 * 179.72227 * 21 19 18 24 24 H 1.48499 * 109.47071 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46874 * 119.99773 * 23 21 19 26 26 H 1.48496 * 109.47015 * 240.00103 * 23 21 19 27 27 S 1.71218 * 125.69893 * 180.22071 * 2 1 3 28 28 H 1.08999 * 109.47134 * 90.02588 * 1 2 3 29 29 H 1.09003 * 109.46657 * 210.02560 * 1 2 3 30 30 H 1.09003 * 109.47194 * 330.02490 * 1 2 3 31 31 H 1.08999 * 109.47323 * 330.02271 * 6 5 4 32 32 H 1.09004 * 109.47010 * 210.02425 * 6 5 4 33 33 H 1.09006 * 109.47033 * 59.99889 * 8 7 6 34 34 H 1.09000 * 109.47268 * 300.00300 * 8 7 6 35 35 H 0.96998 * 119.99685 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47105 * 64.66627 * 12 11 9 37 37 H 1.08999 * 109.47104 * 304.66256 * 12 11 9 38 38 H 1.08998 * 110.85390 * 100.19558 * 15 13 12 39 39 H 1.09008 * 110.51105 * 336.97560 * 15 13 12 40 40 H 1.09003 * 110.99873 * 277.23077 * 16 15 13 41 41 H 1.08989 * 111.00605 * 153.37739 * 16 15 13 42 42 H 1.08995 * 110.37065 * 204.15381 * 17 16 15 43 43 H 1.09000 * 110.46084 * 81.88023 * 17 16 15 44 44 H 0.97002 * 120.00414 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8485 0.0005 5 6 3.8937 -0.3874 0.0015 6 6 5.3233 -0.8640 0.0017 7 8 5.7751 -1.0141 1.3491 8 6 7.1263 -1.4652 1.4621 9 6 7.4952 -1.5869 2.9182 10 8 6.6809 -1.3146 3.7748 11 7 8.7299 -1.9983 3.2686 12 6 9.0882 -2.1171 4.6841 13 6 10.5679 -2.4866 4.8063 14 1 11.1779 -1.7683 4.2586 15 6 10.8052 -3.9059 4.2484 16 6 11.8460 -4.4995 5.2341 17 6 11.4010 -3.8653 6.5755 18 7 10.9641 -2.5023 6.2220 19 6 10.9276 -1.4300 7.0729 20 1 10.8069 -0.4319 6.6788 21 6 11.0460 -1.6261 8.4420 22 7 11.1927 -2.8427 8.9224 23 14 11.0041 -0.1627 9.6022 24 1 10.8364 1.0867 8.8172 25 1 9.8662 -0.3108 10.5449 26 1 12.2756 -0.1006 10.3667 27 16 2.5061 -1.3904 -0.0054 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8902 0.5135 31 1 5.9495 -0.1349 -0.5125 32 1 5.3864 -1.8235 -0.5117 33 1 7.7902 -0.7489 0.9781 34 1 7.2265 -2.4372 0.9791 35 1 9.3812 -2.2157 2.5834 36 1 8.4803 -2.8933 5.1488 37 1 8.9086 -1.1660 5.1854 38 1 11.2118 -3.8627 3.2380 39 1 9.8812 -4.4838 4.2690 40 1 12.8564 -4.1869 4.9703 41 1 11.7724 -5.5863 5.2723 42 1 12.2377 -3.8265 7.2729 43 1 10.5739 -4.4287 7.0075 44 1 11.2750 -2.9798 9.8791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753102909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:22 Heat of formation + Delta-G solvation = 11.422119 kcal Electronic energy + Delta-G solvation = -26130.931153 eV Core-core repulsion = 22211.843628 eV Total energy + Delta-G solvation = -3919.087525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65141 -39.69374 -38.14084 -37.41877 -34.27676 -33.79184 -32.50669 -31.01393 -29.89523 -29.13957 -27.77337 -26.63481 -24.84202 -24.61637 -23.60785 -20.70332 -20.34852 -20.06915 -19.73508 -19.52721 -17.48034 -17.31102 -16.64717 -16.49212 -16.05726 -15.75507 -15.52765 -14.79251 -14.75715 -14.48635 -14.05878 -13.88668 -13.69008 -13.55405 -13.34152 -13.15483 -12.93236 -12.49441 -12.25871 -12.10105 -11.90950 -11.76635 -11.37115 -10.95347 -10.84449 -10.81392 -10.63553 -10.24687 -10.18960 -10.14934 -10.09852 -10.01524 -9.93763 -9.87592 -9.74554 -9.56163 -8.74980 -8.59010 -6.86677 -5.78198 -3.14931 -0.04787 0.48514 0.95358 2.09111 2.77147 2.82921 3.39575 3.46564 3.48015 3.49489 3.89892 4.18420 4.35500 4.48206 4.57385 4.74324 4.83446 4.88146 4.89025 4.95762 5.04514 5.13321 5.30620 5.36155 5.38035 5.46817 5.59963 5.77657 6.00409 6.09803 6.19744 6.42760 6.48470 6.53285 6.58342 6.66885 6.78420 7.02617 7.49929 7.58680 7.71560 7.78179 8.17610 8.23712 8.42858 9.15918 9.76323 10.42613 11.33497 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.001946 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.453747 B =14387.434998 C =15421.956768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.018 4.018 3 N -0.262 5.262 4 N -0.237 5.237 5 C -0.021 4.021 6 C 0.143 3.857 7 O -0.354 6.354 8 C 0.045 3.955 9 C 0.506 3.494 10 O -0.520 6.520 11 N -0.721 5.721 12 C 0.110 3.890 13 C 0.152 3.848 14 H 0.038 0.962 15 C -0.127 4.127 16 C -0.148 4.148 17 C 0.171 3.829 18 N -0.588 5.588 19 C -0.233 4.233 20 H 0.077 0.923 21 C -0.002 4.002 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 S 0.196 5.804 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.396 0.604 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.025 0.975 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.808 -2.971 -24.202 28.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.296 4.296 3 N -0.101 5.101 4 N -0.076 5.076 5 C -0.300 4.300 6 C 0.062 3.938 7 O -0.271 6.271 8 C -0.035 4.035 9 C 0.290 3.710 10 O -0.394 6.394 11 N -0.374 5.374 12 C -0.015 4.015 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.165 4.165 16 C -0.187 4.187 17 C 0.046 3.954 18 N -0.313 5.313 19 C -0.362 4.362 20 H 0.095 0.905 21 C -0.199 4.199 22 N -0.562 5.562 23 Si 0.741 3.259 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 S 0.439 5.561 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.229 0.771 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.043 0.957 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.422 -2.346 -23.127 27.356 hybrid contribution 0.393 0.685 0.206 0.816 sum -14.029 -1.661 -22.921 26.925 Atomic orbital electron populations 1.20422 0.83694 1.05041 1.04419 1.29357 1.04569 0.92025 1.03643 1.71499 0.96755 1.26743 1.15110 1.71425 1.06585 1.17053 1.12562 1.28670 1.02213 0.92803 1.06321 1.20663 0.86616 1.00759 0.85730 1.88096 1.27436 1.88005 1.23590 1.22321 0.84395 1.00740 0.96076 1.20082 0.82798 0.78237 0.89895 1.90766 1.49238 1.47809 1.51619 1.46022 1.13018 1.68272 1.10118 1.22288 0.98219 1.02531 0.78415 1.21142 0.91081 0.94707 0.88764 0.94400 1.22631 0.99394 0.96577 0.97937 1.22999 0.97994 0.98921 0.98783 1.21482 0.98581 0.83890 0.91436 1.44520 1.74047 1.07634 1.05074 1.19042 1.44210 0.86050 0.86870 0.90525 1.24914 1.01508 0.96705 0.96791 1.69944 1.55187 1.18894 1.12154 0.86066 0.77252 0.81616 0.80976 1.20327 1.21574 1.21685 1.83684 0.97207 1.11248 1.63952 0.88951 0.89466 0.88589 0.89290 0.90220 0.89756 0.89898 0.77094 0.91916 0.90996 0.92336 0.91824 0.92270 0.92323 0.90742 0.95661 0.93632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.48 36.00 0.38 0.02 16 2 C -0.02 -0.17 7.53 -13.30 -0.10 -0.27 16 3 N -0.26 -3.37 11.66 32.58 0.38 -2.99 16 4 N -0.24 -3.24 11.66 32.58 0.38 -2.86 16 5 C -0.02 -0.23 7.16 -13.30 -0.10 -0.33 16 6 C 0.14 1.25 6.54 36.01 0.24 1.48 16 7 O -0.35 -4.51 9.86 -55.14 -0.54 -5.06 16 8 C 0.04 0.45 6.42 36.01 0.23 0.68 16 9 C 0.51 7.78 7.91 -10.98 -0.09 7.69 16 10 O -0.52 -11.00 16.50 -14.35 -0.24 -11.24 16 11 N -0.72 -10.18 5.41 -60.29 -0.33 -10.50 16 12 C 0.11 2.09 5.10 -4.04 -0.02 2.07 16 13 C 0.15 2.90 3.22 -66.95 -0.22 2.68 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C -0.13 -2.00 6.09 -24.89 -0.15 -2.15 16 16 C -0.15 -2.62 7.09 -24.58 -0.17 -2.80 16 17 C 0.17 4.01 5.43 -2.53 -0.01 3.99 16 18 N -0.59 -14.43 3.13 -162.57 -0.51 -14.93 16 19 C -0.23 -6.39 9.72 -15.06 -0.15 -6.54 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C 0.00 -0.06 5.47 -17.43 -0.10 -0.15 16 22 N -0.92 -26.61 10.54 55.49 0.58 -26.03 16 23 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 S 0.20 1.58 23.04 -107.50 -2.48 -0.90 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.40 4.03 8.25 -40.82 -0.34 3.69 16 36 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 37 H 0.07 1.60 7.86 -51.93 -0.41 1.19 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.98 7.77 -51.92 -0.40 0.58 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 1.95 6.86 -51.93 -0.36 1.60 16 43 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 383.35 15.07 5.78 5.78 Total: -1.00 -37.43 383.35 -8.79 -46.22 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -6.54 Total: -1.16 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -0.26 Total: 6.39 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.51 Total: -57.31 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.78 Total: -16.29 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.48 Total: -0.90 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.43 -8.79 -46.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753102909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.643 kcal (2) G-P(sol) polarization free energy of solvation -37.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds