Wall clock time and date at job start Sat Apr 11 2020 05:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29415 * 125.69480 * 2 1 4 4 N 1.26402 * 116.47631 * 179.97438 * 3 2 1 5 5 C 1.29414 * 116.47512 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.69661 * 179.97438 * 5 4 3 7 7 O 1.42902 * 109.46998 * 90.02551 * 6 5 4 8 8 C 1.42896 * 114.00004 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.47356 * 179.97438 * 8 7 6 10 10 O 1.21282 * 119.99902 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00309 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99968 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46939 * 184.66465 * 12 11 9 14 14 H 1.08999 * 109.99497 * 54.37918 * 13 12 11 15 15 C 1.54336 * 109.99295 * 293.34403 * 13 12 11 16 16 C 1.55157 * 103.02203 * 218.66756 * 15 13 12 17 17 C 1.54907 * 101.58122 * 35.30138 * 16 15 13 18 18 N 1.47015 * 109.88218 * 175.47271 * 13 12 11 19 19 C 1.36939 * 125.65217 * 298.39774 * 18 13 12 20 20 H 1.07995 * 119.99444 * 345.99855 * 19 18 13 21 21 C 1.38808 * 120.00115 * 166.00001 * 19 18 13 22 22 N 1.31621 * 120.00392 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99925 * 179.72227 * 21 19 18 24 24 H 1.48499 * 109.47071 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46874 * 119.99773 * 23 21 19 26 26 H 1.48496 * 109.47015 * 240.00103 * 23 21 19 27 27 S 1.71218 * 125.69893 * 180.22071 * 2 1 3 28 28 H 1.08999 * 109.47134 * 90.02588 * 1 2 3 29 29 H 1.09003 * 109.46657 * 210.02560 * 1 2 3 30 30 H 1.09003 * 109.47194 * 330.02490 * 1 2 3 31 31 H 1.08999 * 109.47323 * 330.02271 * 6 5 4 32 32 H 1.09004 * 109.47010 * 210.02425 * 6 5 4 33 33 H 1.09006 * 109.47033 * 59.99889 * 8 7 6 34 34 H 1.09000 * 109.47268 * 300.00300 * 8 7 6 35 35 H 0.96998 * 119.99685 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47105 * 64.66627 * 12 11 9 37 37 H 1.08999 * 109.47104 * 304.66256 * 12 11 9 38 38 H 1.08998 * 110.85390 * 100.19558 * 15 13 12 39 39 H 1.09008 * 110.51105 * 336.97560 * 15 13 12 40 40 H 1.09003 * 110.99873 * 277.23077 * 16 15 13 41 41 H 1.08989 * 111.00605 * 153.37739 * 16 15 13 42 42 H 1.08995 * 110.37065 * 204.15381 * 17 16 15 43 43 H 1.09000 * 110.46084 * 81.88023 * 17 16 15 44 44 H 0.97002 * 120.00414 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8485 0.0005 5 6 3.8937 -0.3874 0.0015 6 6 5.3233 -0.8640 0.0017 7 8 5.7751 -1.0141 1.3491 8 6 7.1263 -1.4652 1.4621 9 6 7.4952 -1.5869 2.9182 10 8 6.6809 -1.3146 3.7748 11 7 8.7299 -1.9983 3.2686 12 6 9.0882 -2.1171 4.6841 13 6 10.5679 -2.4866 4.8063 14 1 11.1779 -1.7683 4.2586 15 6 10.8052 -3.9059 4.2484 16 6 11.8460 -4.4995 5.2341 17 6 11.4010 -3.8653 6.5755 18 7 10.9641 -2.5023 6.2220 19 6 10.9276 -1.4300 7.0729 20 1 10.8069 -0.4319 6.6788 21 6 11.0460 -1.6261 8.4420 22 7 11.1927 -2.8427 8.9224 23 14 11.0041 -0.1627 9.6022 24 1 10.8364 1.0867 8.8172 25 1 9.8662 -0.3108 10.5449 26 1 12.2756 -0.1006 10.3667 27 16 2.5061 -1.3904 -0.0054 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5143 30 1 -0.3634 0.8902 0.5135 31 1 5.9495 -0.1349 -0.5125 32 1 5.3864 -1.8235 -0.5117 33 1 7.7902 -0.7489 0.9781 34 1 7.2265 -2.4372 0.9791 35 1 9.3812 -2.2157 2.5834 36 1 8.4803 -2.8933 5.1488 37 1 8.9086 -1.1660 5.1854 38 1 11.2118 -3.8627 3.2380 39 1 9.8812 -4.4838 4.2690 40 1 12.8564 -4.1869 4.9703 41 1 11.7724 -5.5863 5.2723 42 1 12.2377 -3.8265 7.2729 43 1 10.5739 -4.4287 7.0075 44 1 11.2750 -2.9798 9.8791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753102909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:21 Heat of formation + Delta-G solvation = -17.467849 kcal Electronic energy + Delta-G solvation = -26132.183916 eV Core-core repulsion = 22211.843628 eV Total energy + Delta-G solvation = -3920.340288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.41277 -40.90794 -39.41969 -38.63299 -35.76355 -34.44850 -34.40739 -31.80439 -31.38432 -30.68089 -28.79517 -27.42879 -26.63570 -25.41013 -25.07391 -22.12375 -21.58712 -21.16168 -20.98866 -20.44294 -18.93267 -18.23224 -18.11370 -17.33669 -17.19569 -16.78023 -16.60868 -16.35055 -15.96799 -15.76364 -15.59303 -15.04916 -14.66120 -14.40079 -14.30964 -13.98790 -13.96823 -13.65976 -13.51191 -13.46524 -13.17406 -12.99259 -12.97588 -12.87328 -12.71032 -12.00622 -11.87723 -11.68377 -11.56755 -11.46245 -11.37432 -11.35251 -11.01807 -10.82715 -10.79725 -10.70741 -10.66263 -10.10736 -8.87191 -7.90704 -5.27639 -0.72400 -0.14491 0.25815 1.30839 1.41011 1.43594 1.52514 1.60016 1.87377 2.45806 2.73616 3.18944 3.29089 3.54293 3.67577 3.78388 3.86172 3.98421 4.00732 4.08878 4.24301 4.28756 4.29236 4.34943 4.43121 4.45822 4.56908 4.59315 4.69447 4.74925 4.98355 5.02458 5.03858 5.16891 5.23928 5.36539 5.47100 5.57710 5.67724 5.79309 5.86236 6.22333 6.61709 7.07950 7.29972 7.43393 7.75328 8.39918 9.19842 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016869 B = 0.001946 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.453747 B =14387.434998 C =15421.956768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.023 4.023 3 N -0.308 5.308 4 N -0.281 5.281 5 C -0.045 4.045 6 C 0.140 3.860 7 O -0.398 6.398 8 C 0.054 3.946 9 C 0.499 3.501 10 O -0.589 6.589 11 N -0.701 5.701 12 C 0.130 3.870 13 C 0.147 3.853 14 H 0.053 0.947 15 C -0.112 4.112 16 C -0.133 4.133 17 C 0.171 3.829 18 N -0.612 5.612 19 C -0.237 4.237 20 H 0.074 0.926 21 C -0.061 4.061 22 N -0.944 5.944 23 Si 0.969 3.031 24 H -0.270 1.270 25 H -0.296 1.296 26 H -0.286 1.286 27 S 0.253 5.747 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.421 0.579 36 H 0.035 0.965 37 H 0.028 0.972 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.036 0.964 43 H -0.010 1.010 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.726 -4.282 -27.970 31.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.301 4.301 3 N -0.147 5.147 4 N -0.121 5.121 5 C -0.325 4.325 6 C 0.060 3.940 7 O -0.316 6.316 8 C -0.025 4.025 9 C 0.286 3.714 10 O -0.469 6.469 11 N -0.356 5.356 12 C 0.003 3.997 13 C 0.040 3.960 14 H 0.071 0.929 15 C -0.150 4.150 16 C -0.172 4.172 17 C 0.046 3.954 18 N -0.336 5.336 19 C -0.367 4.367 20 H 0.092 0.908 21 C -0.255 4.255 22 N -0.593 5.593 23 Si 0.798 3.202 24 H -0.194 1.194 25 H -0.223 1.223 26 H -0.213 1.213 27 S 0.497 5.503 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.259 0.741 36 H 0.053 0.947 37 H 0.046 0.954 38 H 0.130 0.870 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.055 0.945 43 H 0.008 0.992 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -14.308 -3.663 -26.988 30.765 hybrid contribution 0.286 1.057 1.318 1.713 sum -14.022 -2.607 -25.670 29.366 Atomic orbital electron populations 1.20676 0.80992 1.06017 1.06102 1.30037 1.06329 0.92073 1.01669 1.71441 0.97089 1.28716 1.17452 1.71364 1.07397 1.19041 1.14273 1.29167 1.04355 0.92940 1.06008 1.21002 0.85484 1.03216 0.84259 1.88024 1.28735 1.88655 1.26215 1.22418 0.84108 1.04371 0.91597 1.21203 0.81844 0.76220 0.92113 1.90742 1.51236 1.50734 1.54169 1.45667 1.13691 1.67725 1.08481 1.21680 0.97864 0.99183 0.80983 1.21380 0.90667 0.97830 0.86123 0.92915 1.22635 0.99250 0.93322 0.99746 1.22864 0.98991 1.00098 0.95207 1.21308 0.95994 0.83881 0.94212 1.44786 1.74660 1.07213 1.06972 1.19313 1.42580 0.87087 0.87676 0.90770 1.25656 1.02457 0.98988 0.98377 1.70138 1.56884 1.20457 1.11788 0.85150 0.76826 0.79261 0.78979 1.19409 1.22301 1.21295 1.83364 0.95065 1.09325 1.62570 0.86745 0.87226 0.88815 0.88013 0.86042 0.86248 0.84953 0.74090 0.94690 0.95357 0.87034 0.91347 0.91101 0.89811 0.94529 0.99164 0.94307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.48 71.23 0.75 0.13 16 2 C -0.02 -0.40 7.53 88.46 0.67 0.26 16 3 N -0.31 -8.04 11.66 -50.85 -0.59 -8.63 16 4 N -0.28 -7.78 11.66 -50.85 -0.59 -8.37 16 5 C -0.05 -0.94 7.16 88.46 0.63 -0.31 16 6 C 0.14 2.05 6.54 71.24 0.47 2.52 16 7 O -0.40 -9.29 9.86 -129.94 -1.28 -10.57 16 8 C 0.05 0.88 6.42 71.24 0.46 1.33 16 9 C 0.50 14.60 7.91 87.66 0.69 15.30 16 10 O -0.59 -25.58 16.50 16.00 0.26 -25.32 16 11 N -0.70 -18.23 5.41 -463.06 -2.50 -20.74 16 12 C 0.13 4.93 5.10 86.38 0.44 5.37 16 13 C 0.15 5.42 3.22 45.35 0.15 5.57 16 14 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 15 C -0.11 -3.07 6.09 31.79 0.19 -2.88 16 16 C -0.13 -4.36 7.09 31.99 0.23 -4.14 16 17 C 0.17 8.20 5.43 86.85 0.47 8.67 16 18 N -0.61 -30.53 3.13 -668.25 -2.09 -32.61 16 19 C -0.24 -13.38 9.72 84.03 0.82 -12.57 16 20 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 21 C -0.06 -3.55 5.47 84.86 0.46 -3.08 16 22 N -0.94 -57.44 10.54 21.65 0.23 -57.21 16 23 Si 0.97 47.39 29.55 68.60 2.03 49.42 16 24 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 26 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 27 S 0.25 3.60 23.04 -56.49 -1.30 2.30 16 28 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.12 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.42 6.65 8.25 -92.71 -0.76 5.89 16 36 H 0.03 1.51 8.04 -2.39 -0.02 1.50 16 37 H 0.03 1.31 7.86 -2.39 -0.02 1.29 16 38 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.07 1.86 7.77 -2.38 -0.02 1.84 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.04 2.00 6.86 -2.39 -0.02 1.98 16 43 H -0.01 -0.52 8.08 -2.39 -0.02 -0.54 16 44 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -91.71 383.35 0.84 -90.87 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: 0.26 Total: 4.69 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 6.42 Total: 16.18 kcal Atomic # 7 Polarization: -122.02 SS G_CDS: -5.55 Total: -127.57 kcal Atomic # 8 Polarization: -34.87 SS G_CDS: -1.02 Total: -35.89 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.30 Total: 2.30 kcal Total: -91.71 0.84 -90.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753102909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.401 kcal (2) G-P(sol) polarization free energy of solvation -91.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds