Wall clock time and date at job start Sat Apr 11 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52995 * 109.47342 * 2 1 4 4 H 1.09001 * 109.47009 * 54.60058 * 3 2 1 5 5 C 1.52997 * 109.47342 * 174.60404 * 3 2 1 6 6 N 1.46493 * 109.47237 * 174.99682 * 5 3 2 7 7 C 1.34780 * 120.00175 * 180.02562 * 6 5 3 8 8 O 1.21688 * 119.99845 * 359.97438 * 7 6 5 9 9 C 1.46677 * 120.00411 * 180.02562 * 7 6 5 10 10 C 1.35662 * 126.13154 * 179.97438 * 9 7 6 11 11 N 1.30946 * 114.18851 * 180.02562 * 10 9 7 12 12 C 1.29429 * 117.36517 * 359.97438 * 11 10 9 13 13 C 1.50707 * 124.80268 * 180.02562 * 12 11 10 14 14 S 1.70953 * 110.39163 * 359.73226 * 12 11 10 15 15 N 1.46906 * 109.47027 * 294.60717 * 3 2 1 16 16 C 1.46901 * 110.99814 * 300.92314 * 15 3 2 17 17 C 1.50692 * 109.47239 * 185.67747 * 16 15 3 18 18 O 1.21297 * 120.00053 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00418 * 179.72333 * 17 16 15 20 20 C 1.37095 * 120.00548 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99663 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00244 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99701 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00052 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47062 * 90.00572 * 24 22 20 26 26 H 1.48498 * 109.47263 * 210.00397 * 24 22 20 27 27 H 1.48498 * 109.47134 * 330.00733 * 24 22 20 28 28 H 1.08996 * 109.47266 * 178.85937 * 1 2 3 29 29 H 1.08996 * 109.47192 * 298.86685 * 1 2 3 30 30 H 1.09005 * 109.46554 * 58.86247 * 1 2 3 31 31 H 1.08997 * 109.46756 * 239.99316 * 2 1 3 32 32 H 1.08997 * 109.46704 * 119.99760 * 2 1 3 33 33 H 1.08994 * 109.47320 * 295.00077 * 5 3 2 34 34 H 1.09008 * 109.46723 * 54.99791 * 5 3 2 35 35 H 0.97005 * 120.00269 * 0.02562 * 6 5 3 36 36 H 1.07995 * 122.90484 * 359.95849 * 10 9 7 37 37 H 1.09001 * 109.46951 * 90.02968 * 13 12 11 38 38 H 1.08997 * 109.46807 * 210.02912 * 13 12 11 39 39 H 1.09003 * 109.46924 * 330.02557 * 13 12 11 40 40 H 1.00897 * 110.99887 * 64.87330 * 15 3 2 41 41 H 1.09003 * 109.46892 * 65.67283 * 16 15 3 42 42 H 1.09004 * 109.47007 * 305.68019 * 16 15 3 43 43 H 0.97007 * 119.99235 * 0.02562 * 19 17 16 44 44 H 0.97002 * 119.99685 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6000 1.9834 0.8377 5 6 3.5641 1.4446 0.1356 6 7 4.0631 2.8167 0.0159 7 6 5.3852 3.0630 0.1038 8 8 6.1644 2.1457 0.2831 9 6 5.8849 4.4369 -0.0156 10 6 7.1830 4.8248 0.0538 11 7 7.3657 6.1142 -0.0831 12 6 6.3151 6.8480 -0.2643 13 6 6.3312 8.3446 -0.4413 14 16 4.9072 5.8785 -0.2825 15 7 1.6596 2.0963 -1.2593 16 6 2.2180 1.3802 -2.4140 17 6 1.9261 2.1536 -3.6739 18 8 1.3135 3.1989 -3.6157 19 7 2.3508 1.6871 -4.8648 20 6 2.0848 2.3904 -6.0111 21 1 1.5351 3.3186 -5.9598 22 6 2.5232 1.9096 -7.2389 23 7 3.1925 0.7804 -7.3012 24 14 2.1613 2.8683 -8.8006 25 1 3.2664 3.8255 -9.0611 26 1 2.0423 1.9270 -9.9430 27 1 0.8877 3.6146 -8.6394 28 1 -0.3633 -1.0274 -0.0205 29 1 -0.3633 0.4961 0.8999 30 1 -0.3632 0.5314 -0.8797 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8428 1.0402 1.1087 34 1 3.9997 0.8294 -0.6518 35 1 3.4419 3.5480 -0.1267 36 1 7.9953 4.1304 0.2097 37 1 6.4252 8.5841 -1.5005 38 1 5.4036 8.7662 -0.0544 39 1 7.1766 8.7657 0.1029 40 1 0.6569 2.1788 -1.3353 41 1 1.7652 0.3910 -2.4816 42 1 3.2964 1.2785 -2.2916 43 1 2.8442 0.8531 -4.9109 44 1 3.4982 0.4446 -8.1584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753466496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:24 Heat of formation + Delta-G solvation = -32.747458 kcal Electronic energy + Delta-G solvation = -27051.402654 eV Core-core repulsion = 23130.399792 eV Total energy + Delta-G solvation = -3921.002862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.26527 -39.41338 -38.51386 -37.28110 -34.21758 -33.89435 -32.48629 -31.83282 -31.18022 -29.62202 -28.19790 -26.59422 -24.68893 -24.22905 -23.46712 -21.51158 -20.56246 -19.61496 -19.03239 -18.47810 -17.92712 -16.91527 -16.87171 -15.99115 -15.64116 -15.42799 -14.98594 -14.87433 -14.67864 -14.26568 -14.24825 -14.02437 -13.89797 -13.62613 -13.51177 -13.27012 -12.81934 -12.66551 -12.57701 -12.34566 -11.96702 -11.81645 -11.70589 -11.51993 -11.38755 -11.09343 -10.89369 -10.84289 -10.40707 -10.27336 -10.22745 -9.84379 -9.64395 -9.51525 -9.14454 -8.96276 -8.54341 -8.11716 -7.97040 -6.42372 -3.83336 0.11547 1.02985 1.44614 2.34353 3.04176 3.16827 3.17524 3.25600 3.30856 3.89259 3.89991 4.07264 4.30442 4.55137 4.73041 4.75402 4.88445 4.93912 5.12147 5.13166 5.15182 5.20128 5.22262 5.25279 5.38577 5.53135 5.54783 5.57068 5.70263 5.77628 5.83953 5.93634 5.95227 6.03979 6.15564 6.24388 6.35078 7.08945 7.38616 7.50143 7.53679 7.54145 8.04971 8.10517 8.60098 9.16944 9.53506 10.04624 10.75327 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007557 B = 0.003673 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3704.314811 B = 7622.018380 C =10108.643825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.160 4.160 3 C 0.072 3.928 4 H 0.091 0.909 5 C 0.126 3.874 6 N -0.707 5.707 7 C 0.595 3.405 8 O -0.534 6.534 9 C -0.294 4.294 10 C 0.118 3.882 11 N -0.483 5.483 12 C 0.051 3.949 13 C -0.082 4.082 14 S 0.187 5.813 15 N -0.660 5.660 16 C 0.043 3.957 17 C 0.442 3.558 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.409 0.591 36 H 0.187 0.813 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.353 0.647 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.108 5.612 17.770 18.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C -0.038 4.038 4 H 0.109 0.891 5 C 0.002 3.998 6 N -0.358 5.358 7 C 0.380 3.620 8 O -0.413 6.413 9 C -0.418 4.418 10 C -0.040 4.040 11 N -0.198 5.198 12 C -0.223 4.223 13 C -0.142 4.142 14 S 0.443 5.557 15 N -0.293 5.293 16 C -0.090 4.090 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.246 0.754 36 H 0.204 0.796 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.174 0.826 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.211 6.537 17.654 18.864 hybrid contribution 0.089 -1.323 -0.980 1.649 sum 1.300 5.213 16.674 17.518 Atomic orbital electron populations 1.21755 0.95192 1.02028 1.02034 1.22206 0.96829 0.97782 1.03167 1.21934 0.94090 0.93779 0.94046 0.89132 1.21479 0.93137 0.83016 1.02121 1.45696 1.06575 1.10680 1.72843 1.16700 0.82554 0.85867 0.76858 1.90827 1.56072 1.44386 1.50060 1.25765 0.98237 0.98515 1.19288 1.22146 0.95273 0.90816 0.95719 1.66230 1.31458 1.04977 1.17086 1.27519 0.91579 1.02306 1.00885 1.20535 1.04388 0.84987 1.04281 1.84171 1.11100 0.97075 1.63352 1.60208 1.18171 1.51273 0.99600 1.21776 1.00921 0.95521 0.90773 1.19774 0.85353 0.87891 0.84292 1.90514 1.45085 1.24698 1.86424 1.41866 1.49605 1.23306 1.05212 1.19684 1.33605 1.06204 0.83435 0.87945 1.25259 0.96719 0.96451 0.99468 1.69614 1.37664 1.20045 1.26877 0.85872 0.79010 0.78962 0.80533 1.20400 1.20927 1.19418 0.92452 0.92545 0.92417 0.90950 0.91241 0.90876 0.90957 0.75442 0.79613 0.88983 0.89723 0.88990 0.82596 0.93350 0.89576 0.77543 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.71 37.16 0.36 -1.02 16 2 C -0.16 -1.51 5.17 -26.73 -0.14 -1.65 16 3 C 0.07 0.77 2.70 -67.71 -0.18 0.58 16 4 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 5 C 0.13 1.51 4.70 -4.05 -0.02 1.49 16 6 N -0.71 -9.30 5.38 -61.62 -0.33 -9.64 16 7 C 0.60 8.92 7.79 -12.85 -0.10 8.82 16 8 O -0.53 -9.40 16.87 5.20 0.09 -9.31 16 9 C -0.29 -4.00 6.48 -37.10 -0.24 -4.24 16 10 C 0.12 1.58 11.09 -18.85 -0.21 1.37 16 11 N -0.48 -6.27 10.51 -11.50 -0.12 -6.39 16 12 C 0.05 0.56 7.39 -13.29 -0.10 0.46 16 13 C -0.08 -0.58 10.46 36.01 0.38 -0.20 16 14 S 0.19 2.10 22.31 -107.50 -2.40 -0.30 16 15 N -0.66 -9.23 5.36 -107.99 -0.58 -9.81 16 16 C 0.04 0.71 5.34 -4.98 -0.03 0.68 16 17 C 0.44 10.11 7.83 -10.99 -0.09 10.02 16 18 O -0.58 -15.16 15.90 5.54 0.09 -15.07 16 19 N -0.56 -14.17 5.29 -10.97 -0.06 -14.23 16 20 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.62 13.05 55.50 0.72 -23.89 16 24 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.60 6.85 -51.93 -0.36 0.24 16 31 H 0.07 0.77 6.23 -51.93 -0.32 0.44 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.97 6.57 -51.92 -0.34 0.63 16 35 H 0.41 5.21 7.32 -40.82 -0.30 4.91 16 36 H 0.19 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.35 5.03 7.23 -39.29 -0.28 4.75 16 41 H 0.05 0.74 6.49 -51.93 -0.34 0.40 16 42 H 0.09 1.44 6.15 -51.93 -0.32 1.12 16 43 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 382.78 15.07 5.77 5.77 Total: -1.00 -33.32 382.78 -8.34 -41.66 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -5.90 Total: 16.82 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: -0.60 Total: 8.38 kcal Atomic # 7 Polarization: -63.59 SS G_CDS: -0.36 Total: -63.96 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.18 Total: -24.38 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.40 Total: -0.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.32 -8.34 -41.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753466496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.916 kcal (2) G-P(sol) polarization free energy of solvation -33.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds