Wall clock time and date at job start Sat Apr 11 2020 05:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46722 * 2 1 4 4 H 1.09003 * 109.47290 * 302.96285 * 3 2 1 5 5 C 1.53007 * 109.46689 * 182.97096 * 3 2 1 6 6 N 1.46499 * 109.47180 * 184.99962 * 5 3 2 7 7 C 1.34772 * 120.00376 * 179.97438 * 6 5 3 8 8 O 1.21691 * 119.99805 * 0.02562 * 7 6 5 9 9 C 1.46679 * 120.00084 * 179.97438 * 7 6 5 10 10 C 1.35665 * 126.12522 * 180.02562 * 9 7 6 11 11 N 1.30948 * 114.18692 * 180.02562 * 10 9 7 12 12 C 1.29427 * 117.36598 * 359.97438 * 11 10 9 13 13 C 1.50696 * 124.80669 * 180.02562 * 12 11 10 14 14 S 1.70953 * 110.38904 * 359.72536 * 12 11 10 15 15 N 1.46900 * 109.47310 * 62.96833 * 3 2 1 16 16 C 1.46902 * 110.99943 * 65.52174 * 15 3 2 17 17 C 1.50691 * 109.47005 * 182.18202 * 16 15 3 18 18 O 1.21294 * 120.00166 * 0.02562 * 17 16 15 19 19 N 1.34781 * 120.00210 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00206 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99935 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99974 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00046 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00016 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46961 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47079 * 119.99884 * 24 22 20 27 27 H 1.48495 * 109.47405 * 240.00116 * 24 22 20 28 28 H 1.09007 * 109.46861 * 294.77882 * 1 2 3 29 29 H 1.08999 * 109.47485 * 54.77592 * 1 2 3 30 30 H 1.08997 * 109.47008 * 174.78339 * 1 2 3 31 31 H 1.08997 * 109.46724 * 240.00204 * 2 1 3 32 32 H 1.08996 * 109.47282 * 119.99908 * 2 1 3 33 33 H 1.09003 * 109.46609 * 304.99826 * 5 3 2 34 34 H 1.08993 * 109.47298 * 64.99553 * 5 3 2 35 35 H 0.97008 * 119.99838 * 359.97438 * 6 5 3 36 36 H 1.08000 * 122.90935 * 0.03152 * 10 9 7 37 37 H 1.09006 * 109.47229 * 89.97487 * 13 12 11 38 38 H 1.09000 * 109.47291 * 209.97326 * 13 12 11 39 39 H 1.09004 * 109.47270 * 329.97670 * 13 12 11 40 40 H 1.00900 * 110.99745 * 189.47113 * 15 3 2 41 41 H 1.09004 * 109.47094 * 302.18149 * 16 15 3 42 42 H 1.09001 * 109.47402 * 62.18067 * 16 15 3 43 43 H 0.97002 * 119.99583 * 359.97438 * 19 17 16 44 44 H 0.96995 * 120.00206 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6338 1.9715 -0.8622 5 6 3.5682 1.4432 -0.0748 6 7 4.0624 2.8170 0.0453 7 6 5.3870 3.0625 0.0068 8 8 6.1725 2.1430 -0.1283 9 6 5.8818 4.4382 0.1265 10 6 7.1817 4.8254 0.1034 11 7 7.3592 6.1166 0.2304 12 6 6.3024 6.8526 0.3589 13 6 6.3118 8.3514 0.5153 14 16 4.8939 5.8847 0.3180 15 7 1.6097 2.1140 1.2337 16 6 2.2440 1.5077 2.4118 17 6 1.7389 2.1858 3.6591 18 8 0.9296 3.0854 3.5750 19 7 2.1855 1.7921 4.8683 20 6 1.7255 2.4086 6.0030 21 1 1.0049 3.2096 5.9281 22 6 2.1856 2.0023 7.2496 23 7 3.0620 1.0274 7.3408 24 14 1.5594 2.8429 8.7958 25 1 0.5867 3.9018 8.4242 26 1 0.8924 1.8427 9.6675 27 1 2.7006 3.4522 9.5248 28 1 -0.3633 0.4307 0.9331 29 1 -0.3634 0.5927 -0.8395 30 1 -0.3633 -1.0234 -0.0934 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.9719 0.8394 0.7380 34 1 3.8854 1.0251 -1.0301 35 1 3.4362 3.5501 0.1526 36 1 7.9995 4.1292 -0.0099 37 1 6.2647 8.8196 -0.4680 38 1 5.4498 8.6605 1.1065 39 1 7.2277 8.6584 1.0203 40 1 1.7983 3.1043 1.1909 41 1 1.9989 0.4463 2.4506 42 1 3.3252 1.6286 2.3450 43 1 2.8318 1.0719 4.9356 44 1 3.3828 0.7435 8.2110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753466497.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:26 Heat of formation + Delta-G solvation = -30.752642 kcal Electronic energy + Delta-G solvation = -27073.131755 eV Core-core repulsion = 23152.215394 eV Total energy + Delta-G solvation = -3920.916360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.45904 -39.59555 -38.51089 -37.27386 -34.22508 -33.91193 -32.60718 -32.00715 -31.20315 -29.64017 -28.21813 -26.56107 -24.78428 -24.25837 -23.47888 -21.66716 -20.53643 -19.75415 -19.08120 -18.68151 -17.93302 -17.24193 -16.82160 -16.14339 -15.76892 -15.42941 -15.09719 -15.01984 -14.50182 -14.37772 -14.24014 -14.05344 -13.82813 -13.71126 -13.50523 -13.28991 -12.90965 -12.75308 -12.69970 -12.19088 -11.95374 -11.86411 -11.70098 -11.49248 -11.32694 -11.06942 -10.90763 -10.62327 -10.43460 -10.35762 -10.23637 -9.99169 -9.80439 -9.53208 -9.37216 -9.14438 -8.53297 -8.13883 -7.97587 -6.42756 -3.83801 -0.03871 0.86877 1.27865 2.19401 2.81265 2.98421 3.15106 3.25824 3.32577 3.76845 3.88500 4.05732 4.28346 4.49720 4.61405 4.64509 4.82556 5.00206 5.03600 5.06698 5.09178 5.16134 5.24356 5.31231 5.47369 5.47956 5.53954 5.71929 5.76833 5.81329 5.86437 5.95028 6.05214 6.11149 6.20573 6.27754 6.52293 7.06887 7.10637 7.33100 7.48262 7.54032 7.87149 8.04665 8.59398 9.16492 9.52879 10.03771 10.74950 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.007701 B = 0.003608 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3635.249142 B = 7759.452775 C =10156.713733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.090 0.910 5 C 0.080 3.920 6 N -0.722 5.722 7 C 0.600 3.400 8 O -0.524 6.524 9 C -0.298 4.298 10 C 0.124 3.876 11 N -0.481 5.481 12 C 0.060 3.940 13 C -0.083 4.083 14 S 0.175 5.825 15 N -0.652 5.652 16 C 0.042 3.958 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.397 0.603 36 H 0.188 0.812 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.343 0.657 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.930 6.742 -17.837 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.035 4.035 4 H 0.108 0.892 5 C -0.045 4.045 6 N -0.375 5.375 7 C 0.385 3.615 8 O -0.402 6.402 9 C -0.423 4.423 10 C -0.034 4.034 11 N -0.196 5.196 12 C -0.214 4.214 13 C -0.143 4.143 14 S 0.431 5.569 15 N -0.283 5.283 16 C -0.090 4.090 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.090 0.910 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.232 0.768 36 H 0.205 0.795 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.163 0.837 41 H 0.108 0.892 42 H 0.064 0.936 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.838 6.744 -17.671 19.126 hybrid contribution 1.593 -0.109 0.848 1.808 sum 4.431 6.635 -16.823 18.619 Atomic orbital electron populations 1.21617 0.94518 1.00625 1.03125 1.21498 0.97424 0.94084 1.02088 1.22017 0.90071 0.97464 0.93996 0.89216 1.22291 0.96771 0.82316 1.03150 1.45849 1.06524 1.10294 1.74801 1.16657 0.82362 0.85979 0.76497 1.90848 1.55541 1.44300 1.49514 1.25733 0.98112 0.98172 1.20235 1.22184 0.95362 0.90833 0.95020 1.66245 1.31323 1.04873 1.17168 1.27532 0.91102 1.02343 1.00445 1.20564 1.05006 0.84753 1.04020 1.84048 1.11260 0.97070 1.64495 1.60220 1.60844 1.07321 0.99951 1.21796 0.96560 1.00136 0.90522 1.19770 0.86202 0.87101 0.84298 1.90518 1.36720 1.33045 1.86505 1.41872 1.39745 1.33667 1.04644 1.19740 1.23436 1.16624 0.83098 0.87866 1.25265 0.96557 0.96702 0.99383 1.69620 1.30735 1.27966 1.25830 0.85817 0.78589 0.79101 0.80936 1.19208 1.20714 1.20775 0.90989 0.93181 0.93485 0.91719 0.91378 0.90383 0.90685 0.76815 0.79476 0.89055 0.89471 0.88752 0.83704 0.89175 0.93580 0.77521 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.71 37.16 0.36 -1.19 16 2 C -0.11 -1.16 5.29 -26.73 -0.14 -1.31 16 3 C 0.08 0.82 2.73 -67.71 -0.18 0.63 16 4 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 5 C 0.08 0.91 4.47 -4.04 -0.02 0.89 16 6 N -0.72 -8.53 5.31 -61.62 -0.33 -8.86 16 7 C 0.60 8.31 7.79 -12.85 -0.10 8.21 16 8 O -0.52 -8.77 16.87 5.20 0.09 -8.68 16 9 C -0.30 -3.71 6.48 -37.10 -0.24 -3.95 16 10 C 0.12 1.53 11.09 -18.85 -0.21 1.32 16 11 N -0.48 -5.80 10.51 -11.50 -0.12 -5.92 16 12 C 0.06 0.60 7.39 -13.29 -0.10 0.50 16 13 C -0.08 -0.51 10.46 36.00 0.38 -0.14 16 14 S 0.18 1.73 22.31 -107.50 -2.40 -0.67 16 15 N -0.65 -9.32 5.38 -107.99 -0.58 -9.90 16 16 C 0.04 0.71 5.32 -4.98 -0.03 0.69 16 17 C 0.44 10.13 7.82 -10.99 -0.09 10.05 16 18 O -0.58 -15.26 15.83 5.55 0.09 -15.18 16 19 N -0.56 -14.17 5.29 -10.97 -0.06 -14.23 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.60 13.05 55.50 0.72 -23.87 16 24 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.07 0.98 7.85 -51.93 -0.41 0.58 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 33 H 0.08 1.01 6.69 -51.93 -0.35 0.66 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.40 4.20 6.42 -40.82 -0.26 3.94 16 36 H 0.19 2.12 8.06 -52.49 -0.42 1.70 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.34 4.97 7.24 -39.29 -0.28 4.69 16 41 H 0.09 1.43 6.30 -51.93 -0.33 1.11 16 42 H 0.05 0.76 6.41 -51.93 -0.33 0.43 16 43 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 382.95 15.07 5.77 5.77 Total: -1.00 -33.57 382.95 -8.37 -41.94 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -5.93 Total: 15.87 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -0.61 Total: 7.77 kcal Atomic # 7 Polarization: -62.42 SS G_CDS: -0.36 Total: -62.78 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: 0.18 Total: -23.86 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.40 Total: -0.67 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.57 -8.37 -41.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753466497.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.188 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds