Wall clock time and date at job start Sat Apr 11 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46878 * 2 1 4 4 H 1.09002 * 109.47488 * 55.01807 * 3 2 1 5 5 C 1.52998 * 109.47154 * 175.01834 * 3 2 1 6 6 N 1.46499 * 109.47390 * 175.00018 * 5 3 2 7 7 C 1.34776 * 120.00323 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99895 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00062 * 179.97438 * 7 6 5 10 10 S 1.81004 * 109.46943 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00018 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99997 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00168 * 180.02562 * 11 10 9 14 14 N 1.31633 * 119.99934 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00022 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47094 * 89.99871 * 15 13 11 17 17 H 1.48504 * 109.46952 * 209.99767 * 15 13 11 18 18 H 1.48501 * 109.47096 * 329.99748 * 15 13 11 19 19 N 1.46899 * 109.47326 * 295.01528 * 3 2 1 20 20 C 1.46895 * 111.00064 * 297.06337 * 19 3 2 21 21 C 1.50700 * 109.47129 * 181.75604 * 20 19 3 22 22 C 1.38225 * 120.01389 * 104.99623 * 21 20 19 23 23 C 1.38223 * 120.02472 * 179.97438 * 22 21 20 24 24 C 1.38271 * 120.05016 * 0.03023 * 23 22 21 25 25 C 1.38171 * 120.02987 * 359.97438 * 24 23 22 26 26 C 1.38443 * 120.01108 * 284.72109 * 21 20 19 27 27 F 1.35100 * 120.02484 * 359.97438 * 26 21 20 28 28 H 1.09004 * 109.47058 * 295.43014 * 1 2 3 29 29 H 1.09001 * 109.47305 * 55.43097 * 1 2 3 30 30 H 1.08998 * 109.47005 * 175.43386 * 1 2 3 31 31 H 1.09000 * 109.47045 * 240.00176 * 2 1 3 32 32 H 1.09002 * 109.46972 * 119.99698 * 2 1 3 33 33 H 1.08993 * 109.47392 * 55.00187 * 5 3 2 34 34 H 1.09000 * 109.46963 * 294.99506 * 5 3 2 35 35 H 0.97005 * 119.99774 * 359.97438 * 6 5 3 36 36 H 1.09000 * 109.47009 * 300.00140 * 9 7 6 37 37 H 1.09002 * 109.47123 * 60.00664 * 9 7 6 38 38 H 0.97002 * 119.99841 * 180.02562 * 14 13 11 39 39 H 1.00905 * 111.00444 * 173.10312 * 19 3 2 40 40 H 1.09000 * 109.47284 * 301.75078 * 20 19 3 41 41 H 1.08992 * 109.47396 * 61.75677 * 20 19 3 42 42 H 1.07991 * 119.98587 * 359.95693 * 22 21 20 43 43 H 1.07999 * 119.97293 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.98297 * 179.97438 * 24 23 22 45 45 H 1.07993 * 120.01574 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6056 1.9815 0.8420 5 6 3.5648 1.4444 0.1253 6 7 4.0630 2.8169 0.0055 7 6 5.3856 3.0632 0.0860 8 8 6.1634 2.1485 0.2572 9 6 5.8980 4.4750 -0.0378 10 16 7.7020 4.4772 0.1106 11 6 8.0213 6.2011 -0.0650 12 1 7.2025 6.8896 -0.2135 13 6 9.3252 6.6741 -0.0136 14 7 10.3231 5.8349 0.1669 15 14 9.6637 8.5016 -0.2005 16 1 9.6397 9.1487 1.1359 17 1 10.9987 8.6968 -0.8210 18 1 8.6220 9.1122 -1.0649 19 7 1.6510 2.0994 -1.2550 20 6 2.2760 1.4407 -2.4097 21 6 1.8893 2.1668 -3.6723 22 6 2.8049 2.9844 -4.3078 23 6 2.4506 3.6500 -5.4662 24 6 1.1800 3.4995 -5.9903 25 6 0.2630 2.6828 -5.3568 26 6 0.6186 2.0107 -4.1994 27 9 -0.2751 1.2071 -3.5824 28 1 -0.3633 0.4413 0.9281 29 1 -0.3634 0.5831 -0.8462 30 1 -0.3633 -1.0244 -0.0818 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9952 0.8314 -0.6665 34 1 3.8501 1.0377 1.0955 35 1 3.4408 3.5484 -0.1318 36 1 5.6131 4.8811 -1.0083 37 1 5.4673 5.0885 0.7536 38 1 11.2343 6.1656 0.2032 39 1 1.8767 3.0826 -1.2337 40 1 3.3600 1.4607 -2.2967 41 1 1.9356 0.4068 -2.4664 42 1 3.7973 3.1033 -3.8990 43 1 3.1665 4.2890 -5.9618 44 1 0.9041 4.0205 -6.8953 45 1 -0.7295 2.5657 -5.7661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753467883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:31 Heat of formation + Delta-G solvation = -64.685354 kcal Electronic energy + Delta-G solvation = -26814.152344 eV Core-core repulsion = 22871.844590 eV Total energy + Delta-G solvation = -3942.307755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.99488 -39.88748 -39.16209 -37.83925 -34.00972 -33.35568 -32.46000 -31.08145 -30.64015 -29.78195 -27.61534 -25.76870 -25.47943 -23.38919 -22.99628 -22.00953 -20.40872 -20.01810 -17.99060 -17.87074 -17.07999 -16.66183 -16.36625 -16.09452 -15.75660 -15.58803 -15.25470 -14.83391 -14.75551 -14.38868 -14.14280 -13.96779 -13.82923 -13.58617 -13.31686 -13.19021 -12.97859 -12.65598 -12.57285 -12.50153 -12.22986 -11.88603 -11.62277 -11.48440 -11.21075 -11.11283 -11.08943 -11.05602 -10.90990 -10.78695 -9.85374 -9.47699 -9.29323 -9.10489 -8.98726 -8.89682 -8.72057 -8.27798 -6.54015 -6.24860 -3.95860 0.87350 0.94551 2.95934 3.02733 3.20018 3.24521 3.27452 3.30384 3.63153 3.97119 4.05130 4.17254 4.38818 4.45781 4.50176 4.67841 4.79201 4.91488 4.93253 5.06122 5.09090 5.10403 5.18311 5.23408 5.25844 5.40419 5.53628 5.57029 5.61457 5.68822 5.77240 5.82133 5.82712 5.83161 5.88834 6.00055 6.06997 6.07981 6.15309 6.21553 6.47466 6.60925 6.68827 7.01594 7.56064 7.58903 8.31919 8.53515 9.20529 10.82536 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.002706 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.228415 B =10343.104394 C =12252.189069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C 0.078 3.922 4 H 0.092 0.908 5 C 0.084 3.916 6 N -0.740 5.740 7 C 0.532 3.468 8 O -0.515 6.515 9 C -0.153 4.153 10 S -0.059 6.059 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.669 5.669 20 C 0.091 3.909 21 C -0.122 4.122 22 C -0.082 4.082 23 C -0.131 4.131 24 C -0.091 4.091 25 C -0.162 4.162 26 C 0.122 3.878 27 F -0.132 7.132 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.394 0.606 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.269 0.731 39 H 0.341 0.659 40 H 0.055 0.945 41 H 0.087 0.913 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.241 -7.818 -8.365 25.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.033 4.033 4 H 0.110 0.890 5 C -0.042 4.042 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.389 6.389 9 C -0.304 4.304 10 S 0.167 5.833 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.202 1.202 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.300 5.300 20 C -0.038 4.038 21 C -0.123 4.123 22 C -0.101 4.101 23 C -0.149 4.149 24 C -0.109 4.109 25 C -0.181 4.181 26 C 0.102 3.898 27 F -0.110 7.110 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.228 0.772 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.160 0.840 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.148 0.852 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.364 -9.778 -8.078 25.710 hybrid contribution -0.151 2.805 -0.201 2.816 sum -22.515 -6.973 -8.280 24.982 Atomic orbital electron populations 1.21660 0.94727 1.01214 1.02554 1.21512 0.97128 0.94315 1.02251 1.21933 0.91666 0.97036 0.92646 0.88959 1.22036 0.95092 0.84250 1.02833 1.46002 1.07811 1.08855 1.76881 1.20321 0.81365 0.91120 0.75409 1.90711 1.55392 1.46198 1.46568 1.23531 1.06933 0.95125 1.04812 1.85416 0.91887 1.10983 1.94991 1.22859 0.95440 0.92396 1.57726 0.90938 1.24994 0.95063 0.98971 0.94539 1.70018 0.99512 1.34561 1.46175 0.86169 0.77837 0.83014 0.78488 1.20248 1.20732 1.19676 1.60709 1.61447 1.06708 1.01148 1.20915 0.97861 0.98246 0.86734 1.19876 0.93078 1.00991 0.98365 1.21112 0.99302 0.94682 0.94996 1.21244 0.96802 1.00334 0.96513 1.21035 0.93107 0.97258 0.99510 1.21159 1.01325 0.99741 0.95879 1.17496 0.87071 0.92713 0.92510 1.91503 1.66713 1.70698 1.82114 0.93205 0.91028 0.93404 0.91683 0.91399 0.91333 0.91089 0.77223 0.89331 0.89246 0.92155 0.84039 0.92734 0.89485 0.84936 0.85189 0.85184 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.85 37.16 0.37 -0.77 16 2 C -0.11 -0.90 5.26 -26.73 -0.14 -1.04 16 3 C 0.08 0.64 2.71 -67.72 -0.18 0.46 16 4 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 5 C 0.08 0.92 4.55 -4.04 -0.02 0.90 16 6 N -0.74 -9.17 5.36 -60.30 -0.32 -9.49 16 7 C 0.53 9.54 7.85 -10.99 -0.09 9.45 16 8 O -0.51 -11.45 15.86 5.56 0.09 -11.36 16 9 C -0.15 -3.00 6.16 36.01 0.22 -2.77 16 10 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 11 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 12 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 15 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 16 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 17 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 N -0.67 -5.66 5.74 -108.00 -0.62 -6.28 16 20 C 0.09 0.84 4.73 -4.98 -0.02 0.82 16 21 C -0.12 -1.17 5.38 -104.55 -0.56 -1.74 16 22 C -0.08 -0.77 9.67 -39.59 -0.38 -1.15 16 23 C -0.13 -1.09 10.04 -39.57 -0.40 -1.48 16 24 C -0.09 -0.69 10.04 -39.59 -0.40 -1.09 16 25 C -0.16 -1.36 10.03 -39.51 -0.40 -1.76 16 26 C 0.12 1.20 7.25 -39.41 -0.29 0.92 16 27 F -0.13 -1.42 16.75 2.25 0.04 -1.39 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.66 7.63 -51.93 -0.40 0.26 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.54 6.27 -51.93 -0.33 0.21 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.83 6.61 -51.93 -0.34 0.49 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.39 3.82 7.19 -40.82 -0.29 3.53 16 36 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 37 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.34 2.78 7.34 -39.29 -0.29 2.50 16 40 H 0.05 0.56 6.07 -51.93 -0.32 0.25 16 41 H 0.09 0.83 6.29 -51.93 -0.33 0.50 16 42 H 0.13 1.23 8.00 -52.49 -0.42 0.81 16 43 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 45 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -33.62 389.58 -10.02 -43.64 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.48 Total: 3.91 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.09 Total: -12.03 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -0.21 Total: -40.99 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.36 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.62 -10.02 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.046 kcal (2) G-P(sol) polarization free energy of solvation -33.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds