Wall clock time and date at job start Sat Apr 11 2020 05:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46878 * 2 1 4 4 H 1.09002 * 109.47488 * 55.01807 * 3 2 1 5 5 C 1.52998 * 109.47154 * 175.01834 * 3 2 1 6 6 N 1.46499 * 109.47390 * 175.00018 * 5 3 2 7 7 C 1.34776 * 120.00323 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99895 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00062 * 179.97438 * 7 6 5 10 10 S 1.81004 * 109.46943 * 180.02562 * 9 7 6 11 11 C 1.76200 * 100.00018 * 180.02562 * 10 9 7 12 12 H 1.08003 * 119.99997 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00168 * 180.02562 * 11 10 9 14 14 N 1.31633 * 119.99934 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00022 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47094 * 89.99871 * 15 13 11 17 17 H 1.48504 * 109.46952 * 209.99767 * 15 13 11 18 18 H 1.48501 * 109.47096 * 329.99748 * 15 13 11 19 19 N 1.46899 * 109.47326 * 295.01528 * 3 2 1 20 20 C 1.46895 * 111.00064 * 297.06337 * 19 3 2 21 21 C 1.50700 * 109.47129 * 181.75604 * 20 19 3 22 22 C 1.38225 * 120.01389 * 104.99623 * 21 20 19 23 23 C 1.38223 * 120.02472 * 179.97438 * 22 21 20 24 24 C 1.38271 * 120.05016 * 0.03023 * 23 22 21 25 25 C 1.38171 * 120.02987 * 359.97438 * 24 23 22 26 26 C 1.38443 * 120.01108 * 284.72109 * 21 20 19 27 27 F 1.35100 * 120.02484 * 359.97438 * 26 21 20 28 28 H 1.09004 * 109.47058 * 295.43014 * 1 2 3 29 29 H 1.09001 * 109.47305 * 55.43097 * 1 2 3 30 30 H 1.08998 * 109.47005 * 175.43386 * 1 2 3 31 31 H 1.09000 * 109.47045 * 240.00176 * 2 1 3 32 32 H 1.09002 * 109.46972 * 119.99698 * 2 1 3 33 33 H 1.08993 * 109.47392 * 55.00187 * 5 3 2 34 34 H 1.09000 * 109.46963 * 294.99506 * 5 3 2 35 35 H 0.97005 * 119.99774 * 359.97438 * 6 5 3 36 36 H 1.09000 * 109.47009 * 300.00140 * 9 7 6 37 37 H 1.09002 * 109.47123 * 60.00664 * 9 7 6 38 38 H 0.97002 * 119.99841 * 180.02562 * 14 13 11 39 39 H 1.00905 * 111.00444 * 173.10312 * 19 3 2 40 40 H 1.09000 * 109.47284 * 301.75078 * 20 19 3 41 41 H 1.08992 * 109.47396 * 61.75677 * 20 19 3 42 42 H 1.07991 * 119.98587 * 359.95693 * 22 21 20 43 43 H 1.07999 * 119.97293 * 179.97438 * 23 22 21 44 44 H 1.08003 * 119.98297 * 179.97438 * 24 23 22 45 45 H 1.07993 * 120.01574 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6056 1.9815 0.8420 5 6 3.5648 1.4444 0.1253 6 7 4.0630 2.8169 0.0055 7 6 5.3856 3.0632 0.0860 8 8 6.1634 2.1485 0.2572 9 6 5.8980 4.4750 -0.0378 10 16 7.7020 4.4772 0.1106 11 6 8.0213 6.2011 -0.0650 12 1 7.2025 6.8896 -0.2135 13 6 9.3252 6.6741 -0.0136 14 7 10.3231 5.8349 0.1669 15 14 9.6637 8.5016 -0.2005 16 1 9.6397 9.1487 1.1359 17 1 10.9987 8.6968 -0.8210 18 1 8.6220 9.1122 -1.0649 19 7 1.6510 2.0994 -1.2550 20 6 2.2760 1.4407 -2.4097 21 6 1.8893 2.1668 -3.6723 22 6 2.8049 2.9844 -4.3078 23 6 2.4506 3.6500 -5.4662 24 6 1.1800 3.4995 -5.9903 25 6 0.2630 2.6828 -5.3568 26 6 0.6186 2.0107 -4.1994 27 9 -0.2751 1.2071 -3.5824 28 1 -0.3633 0.4413 0.9281 29 1 -0.3634 0.5831 -0.8462 30 1 -0.3633 -1.0244 -0.0818 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9952 0.8314 -0.6665 34 1 3.8501 1.0377 1.0955 35 1 3.4408 3.5484 -0.1318 36 1 5.6131 4.8811 -1.0083 37 1 5.4673 5.0885 0.7536 38 1 11.2343 6.1656 0.2032 39 1 1.8767 3.0826 -1.2337 40 1 3.3600 1.4607 -2.2967 41 1 1.9356 0.4068 -2.4664 42 1 3.7973 3.1033 -3.8990 43 1 3.1665 4.2890 -5.9618 44 1 0.9041 4.0205 -6.8953 45 1 -0.7295 2.5657 -5.7661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753467883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:30 Heat of formation + Delta-G solvation = -86.573839 kcal Electronic energy + Delta-G solvation = -26815.101500 eV Core-core repulsion = 22871.844590 eV Total energy + Delta-G solvation = -3943.256911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.75568 -40.97523 -40.05249 -38.78829 -35.18477 -34.58700 -34.07817 -31.84161 -31.43967 -31.00541 -28.63513 -27.64284 -26.49635 -24.23720 -23.67525 -22.70753 -21.73596 -20.80550 -19.84428 -18.64000 -17.99809 -17.68994 -17.40063 -17.27740 -16.88219 -16.63040 -16.53030 -16.14173 -15.85130 -15.63189 -15.10784 -14.99508 -14.83559 -14.52808 -14.46165 -14.20849 -14.09817 -13.71245 -13.61103 -13.28971 -13.17095 -13.12346 -12.90171 -12.79384 -12.64358 -12.40447 -12.23329 -11.88192 -11.80614 -11.72044 -11.58873 -11.14821 -10.99662 -10.28421 -10.20728 -9.95529 -9.59060 -9.47397 -8.67512 -8.35223 -6.13345 0.20808 0.27063 1.25844 1.42247 1.46428 1.56706 1.57256 2.20212 2.27251 2.62317 2.99178 3.20601 3.31884 3.36997 3.66170 3.70387 3.81871 3.90020 4.02015 4.14690 4.19897 4.27086 4.28087 4.40915 4.43155 4.48499 4.49730 4.56960 4.69097 4.73848 4.92017 4.93193 4.99962 5.14987 5.19777 5.24494 5.31882 5.35482 5.40369 5.41495 5.50428 5.56129 5.88250 5.99498 6.19311 6.30644 6.40996 7.06317 7.18374 8.73921 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011692 B = 0.002706 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.228415 B =10343.104394 C =12252.189069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.090 3.910 4 H 0.107 0.893 5 C 0.086 3.914 6 N -0.711 5.711 7 C 0.535 3.465 8 O -0.564 6.564 9 C -0.129 4.129 10 S -0.150 6.150 11 C -0.545 4.545 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 0.998 3.002 16 H -0.269 1.269 17 H -0.278 1.278 18 H -0.257 1.257 19 N -0.665 5.665 20 C 0.098 3.902 21 C -0.130 4.130 22 C -0.095 4.095 23 C -0.134 4.134 24 C -0.088 4.088 25 C -0.163 4.163 26 C 0.103 3.897 27 F -0.141 7.141 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.411 0.589 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.271 0.729 39 H 0.344 0.656 40 H 0.042 0.958 41 H 0.083 0.917 42 H 0.128 0.872 43 H 0.144 0.856 44 H 0.158 0.842 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.507 -6.089 -9.135 27.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C -0.020 4.020 4 H 0.125 0.875 5 C -0.039 4.039 6 N -0.366 5.366 7 C 0.321 3.679 8 O -0.442 6.442 9 C -0.280 4.280 10 S 0.077 5.923 11 C -0.693 4.693 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.819 3.181 16 H -0.194 1.194 17 H -0.204 1.204 18 H -0.181 1.181 19 N -0.296 5.296 20 C -0.030 4.030 21 C -0.131 4.131 22 C -0.114 4.114 23 C -0.152 4.152 24 C -0.106 4.106 25 C -0.182 4.182 26 C 0.083 3.917 27 F -0.120 7.120 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.248 0.752 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.164 0.836 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.146 0.854 43 H 0.162 0.838 44 H 0.175 0.825 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -24.700 -8.039 -8.856 27.444 hybrid contribution 0.426 2.195 -0.005 2.236 sum -24.274 -5.844 -8.861 26.493 Atomic orbital electron populations 1.21589 0.94322 1.01342 1.02263 1.21511 0.97316 0.93879 1.02401 1.21897 0.89371 0.97707 0.93019 0.87549 1.22152 0.96924 0.82788 1.02057 1.45691 1.06090 1.10329 1.74510 1.20062 0.82702 0.89852 0.75279 1.90703 1.57035 1.47169 1.49282 1.23364 1.01110 0.96871 1.06684 1.85601 0.99324 1.11992 1.95392 1.23197 0.96140 0.92470 1.57518 0.89884 1.26121 0.94739 1.04413 0.93852 1.70184 1.00044 1.37140 1.47440 0.84965 0.77969 0.76239 0.78886 1.19393 1.20360 1.18061 1.60711 1.61103 1.06870 1.00888 1.20794 0.96932 0.98178 0.87146 1.19897 0.93297 1.01336 0.98551 1.21167 0.99121 0.95348 0.95775 1.21501 0.97563 1.00082 0.96082 1.21359 0.92451 0.96676 1.00085 1.21434 1.02340 0.99192 0.95244 1.17714 0.87123 0.93453 0.93385 1.91476 1.66976 1.71103 1.82415 0.92543 0.92333 0.92954 0.92232 0.90660 0.92436 0.91739 0.75179 0.87164 0.87307 0.92007 0.83641 0.94028 0.89910 0.85442 0.83776 0.82460 0.83278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.85 71.98 0.71 -1.25 16 2 C -0.11 -1.64 5.26 30.59 0.16 -1.48 16 3 C 0.09 1.36 2.71 44.91 0.12 1.48 16 4 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 5 C 0.09 1.83 4.55 86.38 0.39 2.22 16 6 N -0.71 -16.69 5.36 -463.07 -2.48 -19.17 16 7 C 0.54 18.99 7.85 87.66 0.69 19.68 16 8 O -0.56 -25.65 15.86 -3.04 -0.05 -25.70 16 9 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 10 S -0.15 -8.21 20.57 -56.49 -1.16 -9.37 16 11 C -0.55 -30.67 9.50 67.95 0.65 -30.03 16 12 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 13 C 0.01 0.76 5.49 84.86 0.47 1.23 16 14 N -0.91 -55.61 13.22 21.65 0.29 -55.32 16 15 Si 1.00 43.01 29.55 68.60 2.03 45.04 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 18 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 19 N -0.66 -10.39 5.74 -495.60 -2.84 -13.23 16 20 C 0.10 1.78 4.73 85.56 0.40 2.18 16 21 C -0.13 -2.42 5.38 -19.82 -0.11 -2.53 16 22 C -0.10 -1.71 9.67 22.26 0.22 -1.49 16 23 C -0.13 -2.00 10.04 22.27 0.22 -1.78 16 24 C -0.09 -1.12 10.04 22.26 0.22 -0.90 16 25 C -0.16 -2.44 10.03 22.31 0.22 -2.22 16 26 C 0.10 1.94 7.25 22.38 0.16 2.10 16 27 F -0.14 -2.96 16.75 44.97 0.75 -2.21 16 28 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.06 1.00 7.63 -2.39 -0.02 0.99 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.95 6.27 -2.39 -0.01 0.93 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.40 6.61 -2.39 -0.02 1.38 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.41 7.00 7.19 -92.70 -0.67 6.33 16 36 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 37 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.34 4.98 7.34 -89.69 -0.66 4.32 16 40 H 0.04 0.86 6.07 -2.39 -0.01 0.85 16 41 H 0.08 1.57 6.29 -2.39 -0.02 1.56 16 42 H 0.13 2.34 8.00 -2.92 -0.02 2.32 16 43 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 45 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -74.90 389.58 1.19 -73.71 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.31 Total: 23.53 kcal Atomic # 6 Polarization: -22.24 SS G_CDS: 4.97 Total: -17.27 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -5.04 Total: -87.72 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.05 Total: -25.70 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.75 Total: -2.21 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -74.90 1.19 -73.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753467883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.868 kcal (2) G-P(sol) polarization free energy of solvation -74.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds