Wall clock time and date at job start Sat Apr 11 2020 05:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29952 * 126.29272 * 2 1 4 4 O 1.21297 * 110.25244 * 179.84140 * 3 2 1 5 5 C 1.33644 * 109.81196 * 0.42643 * 4 3 2 6 6 C 1.50701 * 126.55202 * 179.76150 * 5 4 3 7 7 N 1.46907 * 109.46867 * 269.97272 * 6 5 4 8 8 C 1.46899 * 111.00202 * 175.33040 * 7 6 5 9 9 C 1.53001 * 112.84852 * 290.70869 * 8 7 6 10 10 N 1.46504 * 109.46668 * 312.16564 * 9 8 7 11 11 C 1.34781 * 119.99661 * 174.70886 * 10 9 8 12 12 O 1.21284 * 119.99849 * 0.02562 * 11 10 9 13 13 C 1.50694 * 119.99762 * 180.02562 * 11 10 9 14 14 S 1.81000 * 109.47276 * 179.97438 * 13 11 10 15 15 C 1.76200 * 100.00431 * 180.02562 * 14 13 11 16 16 H 1.08002 * 119.99555 * 0.02562 * 15 14 13 17 17 C 1.38797 * 120.00094 * 180.02562 * 15 14 13 18 18 N 1.31629 * 120.00019 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99850 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46972 * 89.99697 * 19 17 15 21 21 H 1.48498 * 109.47204 * 209.99588 * 19 17 15 22 22 H 1.48504 * 109.47307 * 330.00087 * 19 17 15 23 23 C 1.53778 * 113.61666 * 159.39609 * 8 7 6 24 24 C 1.53781 * 87.08151 * 220.01809 * 23 8 7 25 25 C 1.53777 * 113.61205 * 61.89878 * 8 7 6 26 26 N 1.31136 * 106.89923 * 359.73498 * 5 4 3 27 27 H 1.09001 * 109.47044 * 269.69048 * 1 2 3 28 28 H 1.09006 * 109.46424 * 29.68835 * 1 2 3 29 29 H 1.08993 * 109.47561 * 149.68584 * 1 2 3 30 30 H 1.08993 * 109.47308 * 29.97155 * 6 5 4 31 31 H 1.08998 * 109.47397 * 149.97675 * 6 5 4 32 32 H 1.00900 * 110.99776 * 299.28673 * 7 6 5 33 33 H 1.08998 * 109.47294 * 72.16434 * 9 8 7 34 34 H 1.08999 * 109.47067 * 192.17002 * 9 8 7 35 35 H 0.97000 * 120.00443 * 354.71078 * 10 9 8 36 36 H 1.09003 * 109.47271 * 300.00006 * 13 11 10 37 37 H 1.09004 * 109.47237 * 59.99717 * 13 11 10 38 38 H 0.97003 * 119.99722 * 180.02562 * 18 17 15 39 39 H 1.08997 * 113.61368 * 334.56828 * 23 8 7 40 40 H 1.08994 * 113.61203 * 105.47027 * 23 8 7 41 41 H 1.08995 * 113.61445 * 270.88059 * 24 23 8 42 42 H 1.09009 * 113.61123 * 139.97887 * 24 23 8 43 43 H 1.09003 * 113.61732 * 254.52962 * 25 8 7 44 44 H 1.08999 * 113.62234 * 25.35084 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2762 1.0474 0.0000 4 8 3.4419 0.7123 0.0032 5 6 3.5299 -0.6213 -0.0038 6 6 4.7969 -1.4371 -0.0079 7 7 5.2084 -1.6955 -1.3943 8 6 6.4999 -2.3942 -1.4387 9 6 7.6674 -1.5137 -0.9887 10 7 7.5896 -0.2164 -1.6650 11 6 8.4563 0.7643 -1.3432 12 8 9.3008 0.5727 -0.4941 13 6 8.3760 2.0989 -2.0385 14 16 9.6629 3.1948 -1.3914 15 6 9.3457 4.6388 -2.3499 16 1 8.5432 4.6416 -3.0727 17 6 10.1271 5.7727 -2.1761 18 7 11.1048 5.7695 -1.2948 19 14 9.7912 7.3033 -3.1929 20 1 8.8173 8.1678 -2.4791 21 1 11.0586 8.0496 -3.3975 22 1 9.2304 6.9093 -4.5103 23 6 6.7565 -3.1310 -2.7638 24 6 7.3600 -4.2687 -1.9235 25 6 6.4758 -3.7766 -0.7656 26 7 2.3029 -1.0842 -0.0058 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3632 0.8928 -0.5090 29 1 -0.3634 -0.8871 -0.5187 30 1 5.5843 -0.8881 0.5084 31 1 4.6206 -2.3846 0.5013 32 1 4.4996 -2.2139 -1.8912 33 1 7.6155 -1.3648 0.0899 34 1 8.6088 -2.0004 -1.2435 35 1 6.9144 -0.0633 -2.3444 36 1 8.5216 1.9598 -3.1098 37 1 7.3969 2.5434 -1.8596 38 1 11.6506 6.5621 -1.1731 39 1 5.8447 -3.4132 -3.2901 40 1 7.4808 -2.6321 -3.4076 41 1 8.4278 -4.1544 -1.7367 42 1 7.0961 -5.2637 -2.2821 43 1 6.9736 -3.7990 0.2039 44 1 5.4870 -4.2348 -0.7442 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754978152.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:37 Heat of formation + Delta-G solvation = 54.718010 kcal Electronic energy + Delta-G solvation = -26834.346654 eV Core-core repulsion = 22917.136580 eV Total energy + Delta-G solvation = -3917.210075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.80531 -40.58206 -38.66927 -36.39424 -35.33571 -34.00930 -32.55979 -32.37802 -29.79392 -29.49705 -27.56726 -26.62033 -25.93125 -25.37002 -23.78172 -22.87211 -21.64342 -20.22327 -19.28078 -18.36090 -17.79619 -17.68336 -16.83407 -16.32129 -16.14363 -15.34373 -15.23927 -15.09962 -14.82571 -14.75366 -14.42804 -13.91981 -13.88305 -13.53375 -13.42262 -13.20830 -12.97915 -12.75721 -12.68677 -12.48415 -12.42872 -11.99783 -11.81174 -11.65912 -11.42175 -11.32975 -11.04071 -11.02075 -10.97255 -10.73963 -10.70483 -10.17287 -9.76403 -9.35321 -9.02074 -9.00862 -8.77539 -8.17539 -6.43870 -6.16928 -3.86554 0.86643 1.90846 2.50350 3.06783 3.18453 3.26272 3.27629 3.31792 3.35716 3.60184 3.76670 3.87098 4.04693 4.20154 4.25474 4.27999 4.40545 4.57590 4.74895 4.93005 4.99994 5.01613 5.09940 5.18314 5.21323 5.25336 5.28400 5.30696 5.43609 5.52896 5.57291 5.58132 5.61973 5.66096 5.70880 5.80066 5.88932 5.98788 6.24075 6.31151 6.68657 6.78080 7.64908 7.86190 7.93068 8.40535 8.71021 9.28695 10.90534 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009189 B = 0.002936 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3046.378842 B = 9532.882437 C =11973.707648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.162 3.838 3 N -0.380 5.380 4 O 0.095 5.905 5 C 0.191 3.809 6 C 0.151 3.849 7 N -0.668 5.668 8 C 0.086 3.914 9 C 0.151 3.849 10 N -0.726 5.726 11 C 0.532 3.468 12 O -0.523 6.523 13 C -0.152 4.152 14 S -0.061 6.061 15 C -0.533 4.533 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.129 4.129 24 C -0.138 4.138 25 C -0.167 4.167 26 N -0.483 5.483 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.353 0.647 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.406 0.594 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.268 0.732 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.972 -22.068 -0.174 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 N -0.086 5.086 4 O 0.035 5.965 5 C -0.031 4.031 6 C 0.020 3.980 7 N -0.301 5.301 8 C -0.006 4.006 9 C 0.026 3.974 10 N -0.381 5.381 11 C 0.318 3.682 12 O -0.398 6.398 13 C -0.303 4.303 14 S 0.165 5.835 15 C -0.682 4.682 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.504 5.504 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C -0.167 4.167 24 C -0.176 4.176 25 C -0.207 4.207 26 N -0.218 5.218 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.101 0.899 32 H 0.173 0.827 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.241 0.759 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.795 -21.126 1.244 27.017 hybrid contribution -1.740 0.392 -1.653 2.431 sum -18.534 -20.735 -0.408 27.814 Atomic orbital electron populations 1.20123 0.82981 1.04630 1.04241 1.25890 1.00581 0.83554 1.01086 1.74718 0.89457 1.23918 1.20540 1.85371 1.22058 1.24527 1.64540 1.28564 0.96359 0.82478 0.95664 1.20285 0.88548 0.96796 0.92338 1.60097 1.04771 1.53018 1.12249 1.22644 0.89158 0.90613 0.98157 1.20961 0.95495 0.83515 0.97442 1.45783 1.36428 1.12433 1.43437 1.20290 0.80311 0.85104 0.82500 1.90696 1.35439 1.81548 1.32143 1.23510 1.06947 0.96418 1.03385 1.85344 1.37919 1.07117 1.53097 1.22875 1.20665 0.98922 1.25706 0.90954 1.24981 0.94504 0.98516 0.95590 1.70022 1.18150 1.29503 1.32723 0.86183 0.77836 0.81548 0.80026 1.20288 1.20803 1.19697 1.23125 1.01783 0.96260 0.95534 1.22761 0.99963 0.98548 0.96355 1.23636 1.01110 0.96538 0.99444 1.71868 0.99712 1.29679 1.20584 0.89394 0.89459 0.89150 0.86795 0.89909 0.82703 0.91276 0.90821 0.75915 0.89361 0.89177 0.92254 0.89567 0.90125 0.89421 0.90970 0.90512 0.89587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.42 10.51 36.01 0.38 -0.04 16 2 C 0.16 1.77 8.22 -156.36 -1.28 0.48 16 3 N -0.38 -5.01 12.16 30.90 0.38 -4.63 16 4 O 0.09 1.22 11.31 18.10 0.20 1.42 16 5 C 0.19 1.95 8.07 -13.05 -0.11 1.85 16 6 C 0.15 1.12 5.92 -4.97 -0.03 1.09 16 7 N -0.67 -4.62 5.76 -100.40 -0.58 -5.20 16 8 C 0.09 0.57 0.80 -130.79 -0.10 0.47 16 9 C 0.15 1.54 4.62 -4.04 -0.02 1.52 16 10 N -0.73 -9.31 5.38 -60.29 -0.32 -9.63 16 11 C 0.53 9.77 7.85 -10.99 -0.09 9.68 16 12 O -0.52 -11.63 15.86 5.55 0.09 -11.54 16 13 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 14 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 15 C -0.53 -15.41 9.50 30.94 0.29 -15.12 16 16 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 18 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 19 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 C -0.13 -0.77 7.33 -25.92 -0.19 -0.96 16 24 C -0.14 -0.75 7.73 -25.92 -0.20 -0.96 16 25 C -0.17 -0.89 6.44 -25.92 -0.17 -1.05 16 26 N -0.48 -5.18 11.55 -9.86 -0.11 -5.29 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.92 6.97 -51.93 -0.36 0.56 16 31 H 0.08 0.47 7.54 -51.93 -0.39 0.08 16 32 H 0.35 2.13 8.51 -39.29 -0.33 1.80 16 33 H 0.07 0.76 7.40 -51.93 -0.38 0.37 16 34 H 0.07 0.79 7.35 -51.93 -0.38 0.40 16 35 H 0.41 4.56 8.10 -40.82 -0.33 4.23 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.09 0.44 7.95 -51.93 -0.41 0.02 16 40 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 41 H 0.09 0.52 7.67 -51.93 -0.40 0.12 16 42 H 0.07 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 44 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -35.93 386.12 -8.76 -44.69 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -6.34 Total: 1.17 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.39 Total: -3.90 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.09 Total: -50.49 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.29 Total: -10.12 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.93 -8.76 -44.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754978152.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.404 kcal (2) G-P(sol) polarization free energy of solvation -35.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds