Wall clock time and date at job start Sat Apr 11 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29415 * 125.69775 * 2 1 4 4 N 1.26396 * 116.47667 * 179.74665 * 3 2 1 5 5 C 1.29416 * 116.47209 * 0.54311 * 4 3 2 6 6 C 1.50707 * 125.69333 * 179.76255 * 5 4 3 7 7 O 1.42897 * 109.46732 * 89.69516 * 6 5 4 8 8 C 1.42900 * 113.99653 * 179.97438 * 7 6 5 9 9 C 1.50705 * 109.47042 * 179.97438 * 8 7 6 10 10 O 1.21278 * 119.99973 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99808 * 180.02562 * 9 8 7 12 12 C 1.46507 * 119.99670 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.46991 * 180.85304 * 12 11 9 14 14 N 1.46495 * 112.85135 * 292.11253 * 13 12 11 15 15 C 1.36938 * 120.00001 * 294.88327 * 14 13 12 16 16 H 1.08003 * 119.99902 * 353.68716 * 15 14 13 17 17 C 1.38809 * 120.00266 * 173.69559 * 15 14 13 18 18 N 1.31614 * 120.00115 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00181 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46871 * 59.99430 * 19 17 15 21 21 H 1.48493 * 109.47312 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.46977 * 299.99885 * 19 17 15 23 23 C 1.53777 * 113.61419 * 160.91220 * 13 12 11 24 24 C 1.53955 * 87.02017 * 220.05234 * 23 13 12 25 25 C 1.53777 * 87.11385 * 25.36283 * 24 23 13 26 26 S 1.71212 * 108.60889 * 359.50098 * 5 4 3 27 27 H 1.08993 * 109.47344 * 269.95346 * 1 2 3 28 28 H 1.09000 * 109.47090 * 29.95628 * 1 2 3 29 29 H 1.09005 * 109.47089 * 149.95126 * 1 2 3 30 30 H 1.08994 * 109.46995 * 329.69323 * 6 5 4 31 31 H 1.08996 * 109.46850 * 209.68848 * 6 5 4 32 32 H 1.09004 * 109.47196 * 60.00342 * 8 7 6 33 33 H 1.08999 * 109.47607 * 299.99455 * 8 7 6 34 34 H 0.96994 * 120.00502 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.47183 * 300.85612 * 12 11 9 36 36 H 1.09003 * 109.47202 * 60.85809 * 12 11 9 37 37 H 0.97001 * 120.00607 * 114.88431 * 14 13 12 38 38 H 0.97002 * 120.00475 * 180.02562 * 18 17 15 39 39 H 1.09003 * 113.61748 * 334.56959 * 23 13 12 40 40 H 1.08997 * 113.61873 * 105.46962 * 23 13 12 41 41 H 1.09005 * 113.53624 * 270.81143 * 24 23 13 42 42 H 1.08997 * 113.66611 * 139.93494 * 24 23 13 43 43 H 1.09001 * 113.61613 * 220.09395 * 25 24 23 44 44 H 1.08997 * 113.61745 * 89.18715 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8485 0.0050 5 6 3.8936 -0.3875 -0.0014 6 6 5.3233 -0.8642 -0.0024 7 8 5.7758 -1.0155 1.3446 8 6 7.1270 -1.4667 1.4565 9 6 7.4966 -1.5897 2.9123 10 8 6.6829 -1.3182 3.7695 11 7 8.7315 -2.0014 3.2616 12 6 9.0906 -2.1215 4.6768 13 6 10.5443 -2.5835 4.7967 14 7 10.7450 -3.9574 4.3296 15 6 10.1549 -4.9994 4.9937 16 1 9.6267 -4.8205 5.9186 17 6 10.2358 -6.2858 4.4783 18 7 10.8791 -6.5038 3.3510 19 14 9.4302 -7.7072 5.3839 20 1 7.9708 -7.4576 5.4985 21 1 9.6589 -8.9668 4.6315 22 1 10.0200 -7.8270 6.7415 23 6 11.1678 -2.3039 6.1743 24 6 12.4545 -1.9151 5.4237 25 6 11.5585 -1.5821 4.2191 26 16 2.5060 -1.3905 -0.0012 27 1 -0.3634 -0.0008 1.0276 28 1 -0.3633 0.8904 -0.5132 29 1 -0.3633 -0.8896 -0.5146 30 1 5.9491 -0.1346 -0.5162 31 1 5.3861 -1.8232 -0.5166 32 1 7.7907 -0.7499 0.9728 33 1 7.2270 -2.4383 0.9726 34 1 9.3823 -2.2190 2.5760 35 1 8.9756 -1.1534 5.1643 36 1 8.4372 -2.8500 5.1570 37 1 11.2958 -4.1290 3.5498 38 1 10.9353 -7.4027 2.9907 39 1 10.7028 -1.4721 6.7035 40 1 11.2748 -3.1942 6.7940 41 1 13.1270 -2.7549 5.2486 42 1 12.9610 -1.0465 5.8444 43 1 11.9803 -1.8906 3.2625 44 1 11.2004 -0.5526 4.2126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754991044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:39 Heat of formation + Delta-G solvation = 20.227309 kcal Electronic energy + Delta-G solvation = -26418.475255 eV Core-core repulsion = 22499.769552 eV Total energy + Delta-G solvation = -3918.705704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.57873 -39.68626 -38.70702 -37.58531 -33.92615 -33.71347 -33.29994 -30.89999 -30.10954 -28.79149 -27.06162 -26.01167 -25.31826 -24.54890 -23.78283 -21.76020 -20.41541 -20.08390 -19.65187 -18.30220 -17.28745 -17.26972 -16.98818 -16.35780 -15.95219 -15.70792 -15.35915 -14.98864 -14.57075 -14.44940 -14.22017 -13.89268 -13.59533 -13.50539 -13.35869 -13.25104 -12.90751 -12.80642 -12.45537 -12.11495 -11.96238 -11.75292 -11.26230 -11.04436 -10.86468 -10.76361 -10.56253 -10.40227 -10.28923 -10.14202 -10.10578 -10.01385 -9.94058 -9.76690 -9.55767 -9.45266 -8.91231 -8.54913 -7.08647 -5.86851 -3.16611 0.03023 0.56207 1.03839 2.16739 2.90863 2.98242 3.39644 3.44158 3.45824 3.59291 4.00447 4.29928 4.46914 4.50736 4.66435 4.87574 4.94891 4.97646 5.06056 5.10515 5.14904 5.16017 5.21182 5.24017 5.27664 5.40215 5.42869 5.50751 5.74650 6.00885 6.10362 6.16760 6.29525 6.36139 6.50666 6.64652 6.68545 6.86943 6.94258 7.03013 7.66045 7.90883 8.24244 8.32109 8.57881 9.43447 9.96623 10.32069 11.35036 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013303 B = 0.002301 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.355448 B =12164.268611 C =13516.306947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.021 4.021 3 N -0.263 5.263 4 N -0.239 5.239 5 C -0.020 4.020 6 C 0.142 3.858 7 O -0.355 6.355 8 C 0.044 3.956 9 C 0.510 3.490 10 O -0.532 6.532 11 N -0.702 5.702 12 C 0.122 3.878 13 C 0.174 3.826 14 N -0.699 5.699 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.008 4.008 18 N -0.932 5.932 19 Si 0.905 3.095 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.151 4.151 24 C -0.129 4.129 25 C -0.144 4.144 26 S 0.200 5.800 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.401 0.599 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.386 0.614 38 H 0.256 0.744 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.850 11.005 -10.106 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.299 4.299 3 N -0.102 5.102 4 N -0.078 5.078 5 C -0.298 4.298 6 C 0.061 3.939 7 O -0.272 6.272 8 C -0.036 4.036 9 C 0.294 3.706 10 O -0.408 6.408 11 N -0.354 5.354 12 C -0.004 4.004 13 C 0.080 3.920 14 N -0.340 5.340 15 C -0.367 4.367 16 H 0.088 0.912 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.735 3.265 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C -0.191 4.191 24 C -0.166 4.166 25 C -0.182 4.182 26 S 0.443 5.557 27 H 0.111 0.889 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.235 0.765 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.586 11.426 -9.225 19.341 hybrid contribution 0.260 -1.076 -0.273 1.140 sum -12.326 10.350 -9.498 18.689 Atomic orbital electron populations 1.20409 0.83754 1.04746 1.04596 1.29346 1.04543 0.92169 1.03837 1.71486 0.96784 1.26789 1.15171 1.71420 1.06555 1.17077 1.12774 1.28694 1.02285 0.92774 1.06076 1.20670 0.86477 1.00857 0.85866 1.88068 1.27624 1.88009 1.23503 1.22311 0.84067 1.00976 0.96200 1.19989 0.82591 0.78125 0.89859 1.90710 1.49277 1.49250 1.51611 1.45625 1.13003 1.67015 1.09722 1.21885 0.98468 0.99766 0.80250 1.20823 0.89858 0.86785 0.94501 1.42052 1.59037 0.98295 1.34585 1.19063 1.27548 0.86503 1.03597 0.91179 1.24715 1.00914 0.97555 0.97238 1.69636 1.46704 1.20931 1.20678 0.86309 0.79321 0.81989 0.78841 1.21183 1.21732 1.21212 1.23343 0.96861 1.01009 0.97889 1.22664 0.96556 1.00432 0.96968 1.23142 0.97972 0.98716 0.98386 1.83770 0.97119 1.11045 1.63731 0.88874 0.88722 0.89559 0.89329 0.90123 0.89901 0.89569 0.76491 0.92628 0.91236 0.77924 0.93446 0.91287 0.90681 0.90035 0.92706 0.91636 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.40 10.48 36.01 0.38 -0.02 16 2 C -0.02 -0.21 7.53 -13.30 -0.10 -0.31 16 3 N -0.26 -3.52 11.66 32.58 0.38 -3.14 16 4 N -0.24 -3.42 11.66 32.58 0.38 -3.04 16 5 C -0.02 -0.23 7.16 -13.29 -0.10 -0.33 16 6 C 0.14 1.46 6.54 36.01 0.24 1.69 16 7 O -0.35 -5.06 9.86 -55.14 -0.54 -5.60 16 8 C 0.04 0.55 6.42 36.01 0.23 0.78 16 9 C 0.51 8.66 7.91 -10.98 -0.09 8.57 16 10 O -0.53 -11.45 16.50 -14.35 -0.24 -11.68 16 11 N -0.70 -11.38 5.42 -60.29 -0.33 -11.71 16 12 C 0.12 2.21 5.08 -4.04 -0.02 2.19 16 13 C 0.17 3.09 0.80 -131.01 -0.10 2.98 16 14 N -0.70 -15.51 5.18 -46.48 -0.24 -15.76 16 15 C -0.24 -6.07 9.04 -15.06 -0.14 -6.20 16 16 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 18 N -0.93 -26.31 13.07 55.49 0.73 -25.58 16 19 Si 0.90 21.77 29.55 -169.99 -5.02 16.75 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.15 -2.52 7.29 -25.83 -0.19 -2.71 16 24 C -0.13 -1.94 8.00 -25.83 -0.21 -2.15 16 25 C -0.14 -2.11 7.05 -25.92 -0.18 -2.29 16 26 S 0.20 1.85 23.04 -107.50 -2.48 -0.63 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.40 5.79 8.31 -40.82 -0.34 5.45 16 35 H 0.06 0.96 8.02 -51.93 -0.42 0.54 16 36 H 0.07 1.48 7.80 -51.93 -0.41 1.07 16 37 H 0.39 9.11 7.87 -40.82 -0.32 8.79 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 40 H 0.07 1.41 7.87 -51.93 -0.41 1.00 16 41 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.94 8.09 -51.93 -0.42 0.52 16 44 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 389.53 15.07 5.87 5.87 Total: -1.00 -34.72 389.53 -8.36 -43.08 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.50 Total: 9.56 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -0.37 Total: 1.88 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.92 Total: -59.23 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.78 Total: -17.29 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.48 Total: -0.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.72 -8.36 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754991044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.309 kcal (2) G-P(sol) polarization free energy of solvation -34.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds