Wall clock time and date at job start Sat Apr 11 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21682 * 119.99956 * 359.97438 * 7 6 5 9 9 C 1.46768 * 119.99845 * 179.97438 * 7 6 5 10 10 C 1.36660 * 126.84076 * 179.68460 * 9 7 6 11 11 N 1.33316 * 107.78494 * 179.89498 * 10 9 7 12 12 C 1.30859 * 109.68797 * 0.37329 * 11 10 9 13 13 C 1.50693 * 125.42255 * 179.78660 * 12 11 10 14 14 N 1.34501 * 109.15988 * 359.76830 * 12 11 10 15 15 H 0.96995 * 126.47791 * 180.02562 * 14 12 11 16 16 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 17 17 C 1.34777 * 119.99828 * 84.72116 * 16 3 2 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 3 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 3 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46661 * 60.00586 * 25 23 21 27 27 H 1.48501 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47355 * 300.00441 * 25 23 21 29 29 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 30 30 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 31 31 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 33 33 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 34 34 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 35 35 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 36 36 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 37 37 H 1.08005 * 126.11240 * 359.97438 * 10 9 7 38 38 H 1.08997 * 109.47248 * 269.97410 * 13 12 11 39 39 H 1.08998 * 109.47099 * 29.97669 * 13 12 11 40 40 H 1.09004 * 109.47350 * 149.97862 * 13 12 11 41 41 H 0.97001 * 120.00384 * 265.00562 * 16 3 2 42 42 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 43 43 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 44 44 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1660 2.1452 0.2580 9 6 5.8849 4.4378 -0.0346 10 6 7.1877 4.8452 0.0308 11 7 7.2088 6.1688 -0.1278 12 6 5.9879 6.6140 -0.2812 13 6 5.6033 8.0570 -0.4827 14 7 5.1309 5.5786 -0.2308 15 1 4.1658 5.6242 -0.3165 16 7 1.6525 2.0975 -1.2518 17 6 0.4331 2.6595 -1.3689 18 8 -0.3415 2.6275 -0.4362 19 6 0.0320 3.3278 -2.6587 20 16 -1.6488 3.9808 -2.5027 21 6 -1.8526 4.6867 -4.1042 22 1 -1.0523 4.6262 -4.8269 23 6 -3.0421 5.3198 -4.4374 24 7 -4.0177 5.3932 -3.5567 25 14 -3.2579 6.0688 -6.1349 26 1 -3.1147 5.0090 -7.1654 27 1 -4.6069 6.6810 -6.2381 28 1 -2.2235 7.1121 -6.3508 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8498 1.0377 1.0961 35 1 3.9954 0.8311 -0.6659 36 1 3.4410 3.5482 -0.1315 37 1 8.0469 4.2086 0.1824 38 1 5.4259 8.5244 0.4858 39 1 6.4103 8.5798 -0.9961 40 1 4.6955 8.1106 -1.0837 41 1 2.2719 2.1231 -1.9978 42 1 0.7205 4.1451 -2.8738 43 1 0.0661 2.6011 -3.4704 44 1 -4.8487 5.8358 -3.7895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759304562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:51 Heat of formation + Delta-G solvation = -28.899813 kcal Electronic energy + Delta-G solvation = -26645.378219 eV Core-core repulsion = 22724.542204 eV Total energy + Delta-G solvation = -3920.836016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.57849 -40.18150 -39.30587 -36.60990 -34.36757 -32.98288 -32.55662 -32.51609 -32.23975 -29.66171 -28.63334 -27.45377 -25.57955 -24.21011 -22.62138 -21.62402 -21.20381 -20.64596 -20.49303 -19.07545 -17.91438 -16.85638 -16.63750 -16.36985 -16.10980 -15.88343 -15.40340 -15.06685 -14.89017 -14.43720 -14.32155 -14.25324 -13.70830 -13.66721 -13.57872 -13.32729 -13.19631 -12.95494 -12.83391 -12.61221 -12.40664 -11.89243 -11.56984 -11.32606 -11.13567 -11.11700 -10.89154 -10.83912 -10.81480 -10.55674 -10.33575 -9.91985 -9.64510 -9.50494 -9.15697 -9.04516 -8.83500 -8.36384 -6.61430 -6.31260 -4.02861 0.92014 2.42861 2.44559 2.66404 2.86586 2.93312 3.01148 3.16193 3.20659 3.23129 3.56114 3.97063 4.11294 4.24568 4.39649 4.64646 4.75828 4.89826 4.91375 5.00290 5.04214 5.08419 5.14179 5.16050 5.32080 5.35488 5.44284 5.48996 5.49091 5.67453 5.72083 5.75445 5.90728 5.98998 5.99553 6.13901 6.19021 6.44153 6.53844 6.76164 6.98382 7.49042 7.50899 7.55039 7.72538 8.25149 8.43074 9.14299 10.75965 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.002975 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.235879 B = 9410.398600 C =12029.695268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.096 0.904 5 C 0.114 3.886 6 N -0.728 5.728 7 C 0.598 3.402 8 O -0.526 6.526 9 C -0.097 4.097 10 C 0.075 3.925 11 N -0.497 5.497 12 C 0.245 3.755 13 C -0.078 4.078 14 N -0.551 5.551 15 H 0.423 0.577 16 N -0.738 5.738 17 C 0.531 3.469 18 O -0.506 6.506 19 C -0.156 4.156 20 S -0.056 6.056 21 C -0.539 4.539 22 H 0.072 0.928 23 C 0.075 3.925 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.282 1.282 28 H -0.274 1.274 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.399 0.601 37 H 0.184 0.816 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.398 0.602 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.972 -2.615 6.864 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.028 3.972 4 H 0.114 0.886 5 C -0.010 4.010 6 N -0.380 5.380 7 C 0.384 3.616 8 O -0.402 6.402 9 C -0.212 4.212 10 C -0.079 4.079 11 N -0.217 5.217 12 C -0.018 4.018 13 C -0.136 4.136 14 N -0.157 5.157 15 H 0.262 0.738 16 N -0.393 5.393 17 C 0.318 3.682 18 O -0.380 6.380 19 C -0.306 4.306 20 S 0.170 5.830 21 C -0.687 4.687 22 H 0.090 0.910 23 C -0.134 4.134 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.207 1.207 28 H -0.199 1.199 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.201 0.799 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.232 0.768 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.741 -2.833 8.611 19.923 hybrid contribution -0.522 0.302 -2.708 2.774 sum 17.220 -2.530 5.903 18.378 Atomic orbital electron populations 1.21808 0.93926 1.00836 1.03835 1.21876 0.97863 0.94759 1.02337 1.21265 0.92182 0.94969 0.88751 0.88602 1.21750 0.92883 0.82752 1.03606 1.45878 1.07065 1.10355 1.74696 1.16824 0.82073 0.86085 0.76569 1.90863 1.55861 1.43969 1.49482 1.21092 0.93414 0.87061 1.19644 1.22678 0.94829 0.91178 0.99233 1.70238 1.20237 1.10535 1.20736 1.23549 0.85195 0.92309 1.00791 1.20369 1.03362 0.86002 1.03891 1.43303 1.10715 1.06760 1.54875 0.73781 1.46161 1.17360 1.59684 1.16124 1.20291 0.80758 0.77520 0.89657 1.90731 1.50229 1.56923 1.40089 1.23555 1.07164 1.02820 0.97078 1.85386 1.06061 1.71224 1.20290 1.22820 1.03865 1.42597 0.99433 0.91023 1.24984 0.94792 0.95473 0.98197 1.69995 1.04946 1.40936 1.34330 0.86236 0.77592 0.79273 0.82489 1.19896 1.20748 1.19928 0.91994 0.91752 0.93481 0.91601 0.91054 0.89584 0.90371 0.76677 0.79868 0.89364 0.88514 0.89975 0.76799 0.89504 0.89265 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.51 37.15 0.32 -1.52 16 2 C -0.13 -1.21 5.61 -26.74 -0.15 -1.36 16 3 C 0.13 1.24 2.42 -67.93 -0.16 1.08 16 4 H 0.10 1.04 7.58 -51.93 -0.39 0.65 16 5 C 0.11 0.92 5.23 -4.04 -0.02 0.90 16 6 N -0.73 -6.08 5.38 -61.59 -0.33 -6.42 16 7 C 0.60 6.37 7.79 -12.81 -0.10 6.27 16 8 O -0.53 -7.18 16.90 5.20 0.09 -7.10 16 9 C -0.10 -0.97 7.08 -82.14 -0.58 -1.55 16 10 C 0.08 0.82 11.66 -17.48 -0.20 0.61 16 11 N -0.50 -5.57 11.20 -10.58 -0.12 -5.68 16 12 C 0.25 2.15 8.12 -155.61 -1.26 0.88 16 13 C -0.08 -0.41 10.51 36.00 0.38 -0.03 16 14 N -0.55 -4.35 6.07 -7.02 -0.04 -4.39 16 15 H 0.42 2.32 8.32 -40.82 -0.34 1.98 16 16 N -0.74 -7.73 4.47 -53.81 -0.24 -7.97 16 17 C 0.53 8.23 6.41 -10.98 -0.07 8.16 16 18 O -0.51 -9.62 12.99 5.55 0.07 -9.55 16 19 C -0.16 -2.78 6.16 36.01 0.22 -2.56 16 20 S -0.06 -1.41 20.57 -107.50 -2.21 -3.62 16 21 C -0.54 -14.61 9.50 30.94 0.29 -14.32 16 22 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 23 C 0.08 2.06 5.49 -17.43 -0.10 1.96 16 24 N -0.87 -25.20 13.22 55.49 0.73 -24.46 16 25 Si 0.92 20.62 29.55 -169.99 -5.02 15.59 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H 0.06 0.85 7.84 -51.93 -0.41 0.44 16 30 H 0.06 0.99 5.63 -51.93 -0.29 0.70 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.40 2.92 7.38 -40.82 -0.30 2.62 16 37 H 0.18 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.40 3.39 8.60 -40.82 -0.35 3.04 16 42 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 43 H 0.09 1.52 8.14 -51.92 -0.42 1.09 16 44 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 387.11 15.07 5.83 5.83 Total: -1.00 -35.33 387.11 -8.96 -44.29 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.28 Total: 4.95 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -1.44 Total: -1.48 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.00 Total: -48.92 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.16 Total: -16.64 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -1.41 SS G_CDS: -2.21 Total: -3.62 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.33 -8.96 -44.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759304562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.387 kcal (2) G-P(sol) polarization free energy of solvation -35.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds