Wall clock time and date at job start Sat Apr 11 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 H 1.08995 * 109.47098 * 54.99720 * 3 2 1 5 5 C 1.53004 * 109.47083 * 174.99797 * 3 2 1 6 6 N 1.46502 * 109.46925 * 175.00128 * 5 3 2 7 7 C 1.34775 * 119.99947 * 180.02562 * 6 5 3 8 8 O 1.21682 * 119.99956 * 359.97438 * 7 6 5 9 9 C 1.46768 * 119.99845 * 179.97438 * 7 6 5 10 10 C 1.36660 * 126.84076 * 179.68460 * 9 7 6 11 11 N 1.33316 * 107.78494 * 179.89498 * 10 9 7 12 12 C 1.30859 * 109.68797 * 0.37329 * 11 10 9 13 13 C 1.50693 * 125.42255 * 179.78660 * 12 11 10 14 14 N 1.34501 * 109.15988 * 359.76830 * 12 11 10 15 15 H 0.96995 * 126.47791 * 180.02562 * 14 12 11 16 16 N 1.46498 * 109.47257 * 294.99786 * 3 2 1 17 17 C 1.34777 * 119.99828 * 84.72116 * 16 3 2 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 3 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 3 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46661 * 60.00586 * 25 23 21 27 27 H 1.48501 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47355 * 300.00441 * 25 23 21 29 29 H 1.09005 * 109.47462 * 300.00060 * 1 2 3 30 30 H 1.08997 * 109.47521 * 60.00105 * 1 2 3 31 31 H 1.09005 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47253 * 239.99716 * 2 1 3 33 33 H 1.09001 * 109.47082 * 119.99695 * 2 1 3 34 34 H 1.08997 * 109.47038 * 294.99798 * 5 3 2 35 35 H 1.08999 * 109.47047 * 55.00424 * 5 3 2 36 36 H 0.96997 * 120.00059 * 359.97438 * 6 5 3 37 37 H 1.08005 * 126.11240 * 359.97438 * 10 9 7 38 38 H 1.08997 * 109.47248 * 269.97410 * 13 12 11 39 39 H 1.08998 * 109.47099 * 29.97669 * 13 12 11 40 40 H 1.09004 * 109.47350 * 149.97862 * 13 12 11 41 41 H 0.97001 * 120.00384 * 265.00562 * 16 3 2 42 42 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 43 43 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 44 44 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5648 1.4443 0.1258 6 7 4.0630 2.8168 0.0060 7 6 5.3857 3.0629 0.0859 8 8 6.1660 2.1452 0.2580 9 6 5.8849 4.4378 -0.0346 10 6 7.1877 4.8452 0.0308 11 7 7.2088 6.1688 -0.1278 12 6 5.9879 6.6140 -0.2812 13 6 5.6033 8.0570 -0.4827 14 7 5.1309 5.5786 -0.2308 15 1 4.1658 5.6242 -0.3165 16 7 1.6525 2.0975 -1.2518 17 6 0.4331 2.6595 -1.3689 18 8 -0.3415 2.6275 -0.4362 19 6 0.0320 3.3278 -2.6587 20 16 -1.6488 3.9808 -2.5027 21 6 -1.8526 4.6867 -4.1042 22 1 -1.0523 4.6262 -4.8269 23 6 -3.0421 5.3198 -4.4374 24 7 -4.0177 5.3932 -3.5567 25 14 -3.2579 6.0688 -6.1349 26 1 -3.1147 5.0090 -7.1654 27 1 -4.6069 6.6810 -6.2381 28 1 -2.2235 7.1121 -6.3508 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8900 34 1 3.8498 1.0377 1.0961 35 1 3.9954 0.8311 -0.6659 36 1 3.4410 3.5482 -0.1315 37 1 8.0469 4.2086 0.1824 38 1 5.4259 8.5244 0.4858 39 1 6.4103 8.5798 -0.9961 40 1 4.6955 8.1106 -1.0837 41 1 2.2719 2.1231 -1.9978 42 1 0.7205 4.1451 -2.8738 43 1 0.0661 2.6011 -3.4704 44 1 -4.8487 5.8358 -3.7895 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759304562.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:50 Heat of formation + Delta-G solvation = -55.411940 kcal Electronic energy + Delta-G solvation = -26646.527871 eV Core-core repulsion = 22724.542204 eV Total energy + Delta-G solvation = -3921.985668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.29230 -41.18919 -40.28805 -37.61354 -35.23266 -34.58219 -33.74004 -33.59826 -32.84465 -30.80875 -29.62280 -28.17584 -27.63522 -25.04509 -23.37940 -22.59540 -21.91326 -21.62418 -21.35877 -19.97921 -19.62636 -17.96620 -17.62285 -17.19477 -16.91921 -16.87424 -16.77839 -16.56669 -16.07454 -15.70069 -15.25130 -15.00914 -14.90312 -14.62521 -14.60060 -14.30755 -14.27191 -13.90600 -13.53429 -13.43455 -13.25357 -13.16647 -13.01055 -12.86777 -12.65305 -12.50885 -12.18944 -11.78731 -11.72085 -11.64737 -11.28500 -11.14774 -11.12967 -10.86689 -10.37183 -10.25862 -10.08327 -9.55847 -8.64190 -8.34899 -6.11466 0.16821 1.27390 1.42651 1.46856 1.55792 1.64461 1.70630 1.74722 1.98146 2.20443 2.25749 2.31061 2.99561 3.32439 3.36676 3.48554 3.73327 3.95500 3.97598 4.04204 4.11964 4.26665 4.31620 4.38786 4.50511 4.53233 4.56476 4.65032 4.72740 4.82056 4.82811 4.90245 5.05865 5.09719 5.14915 5.20663 5.41751 5.45227 5.47457 5.52676 6.14134 6.19223 6.28314 6.48497 6.83420 6.93811 7.07275 7.27004 8.73539 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.002975 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.235879 B = 9410.398600 C =12029.695268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.124 4.124 3 C 0.141 3.859 4 H 0.083 0.917 5 C 0.121 3.879 6 N -0.717 5.717 7 C 0.602 3.398 8 O -0.559 6.559 9 C -0.104 4.104 10 C 0.059 3.941 11 N -0.529 5.529 12 C 0.248 3.752 13 C -0.077 4.077 14 N -0.541 5.541 15 H 0.435 0.565 16 N -0.712 5.712 17 C 0.539 3.461 18 O -0.545 6.545 19 C -0.133 4.133 20 S -0.141 6.141 21 C -0.549 4.549 22 H 0.081 0.919 23 C 0.017 3.983 24 N -0.910 5.910 25 Si 0.992 3.008 26 H -0.265 1.265 27 H -0.280 1.280 28 H -0.261 1.261 29 H 0.042 0.958 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.405 0.595 37 H 0.186 0.814 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.413 0.587 42 H 0.110 0.890 43 H 0.102 0.898 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.374 -2.569 5.733 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C 0.036 3.964 4 H 0.101 0.899 5 C -0.002 4.002 6 N -0.368 5.368 7 C 0.389 3.611 8 O -0.437 6.437 9 C -0.220 4.220 10 C -0.096 4.096 11 N -0.249 5.249 12 C -0.016 4.016 13 C -0.135 4.135 14 N -0.147 5.147 15 H 0.276 0.724 16 N -0.367 5.367 17 C 0.325 3.675 18 O -0.422 6.422 19 C -0.285 4.285 20 S 0.086 5.914 21 C -0.696 4.696 22 H 0.099 0.901 23 C -0.189 4.189 24 N -0.546 5.546 25 Si 0.814 3.186 26 H -0.189 1.189 27 H -0.206 1.206 28 H -0.185 1.185 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.241 0.759 37 H 0.203 0.797 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.249 0.751 42 H 0.128 0.872 43 H 0.120 0.880 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.157 -2.796 7.466 20.749 hybrid contribution -0.883 0.242 -2.295 2.471 sum 18.273 -2.554 5.171 19.162 Atomic orbital electron populations 1.21740 0.96402 1.00647 1.01357 1.21859 0.95359 0.94822 1.04253 1.21279 0.92994 0.94800 0.87308 0.89869 1.21728 0.91363 0.82609 1.04506 1.45785 1.06468 1.10836 1.73747 1.16829 0.82317 0.85867 0.76089 1.90847 1.56745 1.44897 1.51247 1.20981 0.93443 0.87404 1.20168 1.22863 0.95536 0.91480 0.99691 1.70230 1.21806 1.10746 1.22146 1.24185 0.84716 0.93591 0.99146 1.20542 1.04185 0.83790 1.04998 1.43236 1.11240 1.05945 1.54269 0.72372 1.45858 1.15660 1.58023 1.17193 1.19852 0.81816 0.77622 0.88230 1.90735 1.51773 1.58634 1.41025 1.23401 1.02342 1.03742 0.98986 1.85521 1.12778 1.72223 1.20848 1.23180 1.04300 1.42324 0.99829 0.90123 1.26044 0.94410 0.95905 1.02492 1.70158 1.05583 1.42187 1.36719 0.85089 0.77743 0.78635 0.77091 1.18945 1.20565 1.18548 0.93872 0.94812 0.92517 0.90175 0.88647 0.88761 0.89378 0.75910 0.79701 0.88054 0.88219 0.88230 0.75067 0.87211 0.88007 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 8.51 71.98 0.61 -2.90 16 2 C -0.12 -2.01 5.61 30.59 0.17 -1.83 16 3 C 0.14 2.30 2.42 44.99 0.11 2.40 16 4 H 0.08 1.67 7.58 -2.39 -0.02 1.66 16 5 C 0.12 1.61 5.23 86.38 0.45 2.06 16 6 N -0.72 -10.33 5.38 -466.99 -2.51 -12.84 16 7 C 0.60 11.91 7.79 86.47 0.67 12.58 16 8 O -0.56 -14.64 16.90 -4.29 -0.07 -14.71 16 9 C -0.10 -1.97 7.08 40.01 0.28 -1.69 16 10 C 0.06 1.26 11.66 84.10 0.98 2.24 16 11 N -0.53 -11.50 11.20 -187.40 -2.10 -13.60 16 12 C 0.25 3.97 8.12 138.19 1.12 5.09 16 13 C -0.08 -0.65 10.51 71.23 0.75 0.10 16 14 N -0.54 -7.60 6.07 -176.11 -1.07 -8.67 16 15 H 0.43 3.79 8.32 -92.71 -0.77 3.02 16 16 N -0.71 -13.29 4.47 -442.53 -1.98 -15.27 16 17 C 0.54 16.13 6.41 87.66 0.56 16.69 16 18 O -0.55 -20.90 12.99 -3.04 -0.04 -20.94 16 19 C -0.13 -4.60 6.16 71.24 0.44 -4.17 16 20 S -0.14 -7.21 20.57 -56.49 -1.16 -8.38 16 21 C -0.55 -29.69 9.50 67.96 0.65 -29.05 16 22 H 0.08 4.05 7.80 -2.91 -0.02 4.03 16 23 C 0.02 0.90 5.49 84.86 0.47 1.37 16 24 N -0.91 -53.88 13.22 21.65 0.29 -53.60 16 25 Si 0.99 41.84 29.55 68.60 2.03 43.87 16 26 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 27 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 29 H 0.04 1.19 7.84 -2.38 -0.02 1.17 16 30 H 0.03 1.02 5.63 -2.39 -0.01 1.01 16 31 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.41 4.93 7.38 -92.71 -0.68 4.24 16 37 H 0.19 3.64 8.06 -2.91 -0.02 3.61 16 38 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.41 5.65 8.60 -92.71 -0.80 4.85 16 42 H 0.11 3.29 8.14 -2.40 -0.02 3.27 16 43 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 44 H 0.27 14.97 8.31 -92.72 -0.77 14.20 16 Total: -1.00 -79.31 387.11 -0.55 -79.86 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -1.19 Total: 21.39 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 7.26 Total: 2.90 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -7.38 Total: -103.98 kcal Atomic # 8 Polarization: -35.54 SS G_CDS: -0.11 Total: -35.65 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: -7.21 SS G_CDS: -1.16 Total: -8.38 kcal Total: -79.31 -0.55 -79.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759304562.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.447 kcal (2) G-P(sol) polarization free energy of solvation -79.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds