Wall clock time and date at job start Sat Apr 11 2020 05:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47122 * 2 1 4 4 H 1.09005 * 109.47085 * 304.99563 * 3 2 1 5 5 C 1.53006 * 109.47056 * 185.00294 * 3 2 1 6 6 N 1.46497 * 109.46998 * 185.00168 * 5 3 2 7 7 C 1.34779 * 119.99923 * 179.97438 * 6 5 3 8 8 O 1.21680 * 119.99667 * 359.97438 * 7 6 5 9 9 C 1.46767 * 119.99895 * 180.02562 * 7 6 5 10 10 C 1.36655 * 126.84181 * 180.02562 * 9 7 6 11 11 N 1.33318 * 107.78646 * 179.97438 * 10 9 7 12 12 C 1.30864 * 109.68532 * 359.97438 * 11 10 9 13 13 C 1.50692 * 125.41864 * 179.73976 * 12 11 10 14 14 N 1.34497 * 109.15869 * 0.02562 * 12 11 10 15 15 H 0.97000 * 126.47018 * 179.97438 * 14 12 11 16 16 N 1.46499 * 109.47175 * 65.00091 * 3 2 1 17 17 C 1.34778 * 119.99492 * 275.00097 * 16 3 2 18 18 O 1.21274 * 120.00642 * 359.97438 * 17 16 3 19 19 C 1.50702 * 119.99406 * 179.97438 * 17 16 3 20 20 S 1.81001 * 109.46959 * 179.97438 * 19 17 16 21 21 C 1.76199 * 100.00000 * 180.02562 * 20 19 17 22 22 H 1.08004 * 120.00344 * 359.97438 * 21 20 19 23 23 C 1.38797 * 120.00095 * 180.02562 * 21 20 19 24 24 N 1.31632 * 119.99982 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00296 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47140 * 89.99433 * 25 23 21 27 27 H 1.48499 * 109.47320 * 209.99935 * 25 23 21 28 28 H 1.48505 * 109.46930 * 330.00142 * 25 23 21 29 29 H 1.09007 * 109.47111 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47315 * 300.00313 * 1 2 3 31 31 H 1.09001 * 109.46906 * 60.00266 * 1 2 3 32 32 H 1.09005 * 109.47134 * 240.00024 * 2 1 3 33 33 H 1.08996 * 109.47480 * 120.00140 * 2 1 3 34 34 H 1.08992 * 109.47458 * 64.99656 * 5 3 2 35 35 H 1.09001 * 109.46320 * 304.99962 * 5 3 2 36 36 H 0.96998 * 120.00261 * 359.97438 * 6 5 3 37 37 H 1.08001 * 126.11074 * 359.97438 * 10 9 7 38 38 H 1.08997 * 109.47289 * 90.02462 * 13 12 11 39 39 H 1.09003 * 109.47036 * 210.02191 * 13 12 11 40 40 H 1.08997 * 109.47699 * 330.02273 * 13 12 11 41 41 H 0.96998 * 120.00082 * 94.99992 * 16 3 2 42 42 H 1.09003 * 109.47463 * 300.00179 * 19 17 16 43 43 H 1.09000 * 109.47198 * 59.99527 * 19 17 16 44 44 H 0.97000 * 120.00207 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5649 1.4443 -0.1258 6 7 4.0631 2.8168 -0.0060 7 6 5.3858 3.0629 -0.0859 8 8 6.1661 2.1451 -0.2571 9 6 5.8849 4.4378 0.0347 10 6 7.1882 4.8446 -0.0252 11 7 7.2089 6.1687 0.1284 12 6 5.9879 6.6140 0.2809 13 6 5.6037 8.0565 0.4873 14 7 5.1309 5.5786 0.2304 15 1 4.1657 5.6243 0.3155 16 7 1.6524 2.0975 1.2518 17 6 0.4351 2.6644 1.3669 18 8 -0.3393 2.6327 0.4341 19 6 0.0362 3.3376 2.6548 20 16 -1.6421 3.9965 2.4965 21 6 -1.8438 4.7075 4.0960 22 1 -1.0440 4.6459 4.8192 23 6 -3.0310 5.3458 4.4271 24 7 -4.0061 5.4205 3.5459 25 14 -3.2452 6.0989 6.1230 26 1 -2.7822 7.5097 6.1002 27 1 -4.6790 6.0546 6.5069 28 1 -2.4444 5.3312 7.1103 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 3.8499 1.0377 -1.0960 35 1 3.9953 0.8311 0.6659 36 1 3.4410 3.5483 0.1308 37 1 8.0478 4.2073 -0.1710 38 1 5.4287 8.5278 -0.4798 39 1 4.6946 8.1082 1.0865 40 1 6.4098 8.5768 1.0045 41 1 2.2719 2.1232 1.9978 42 1 0.0673 2.6130 3.4685 43 1 0.7277 4.1529 2.8679 44 1 -4.8356 5.8669 3.7771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759304563.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:53 Heat of formation + Delta-G solvation = -29.016811 kcal Electronic energy + Delta-G solvation = -26647.890186 eV Core-core repulsion = 22727.049097 eV Total energy + Delta-G solvation = -3920.841089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.57846 -40.18090 -39.30538 -36.61126 -34.36800 -32.98246 -32.55695 -32.51726 -32.23957 -29.66196 -28.63320 -27.45360 -25.58163 -24.21032 -22.62120 -21.62285 -21.20345 -20.64631 -20.49402 -19.07536 -17.91566 -16.85637 -16.63765 -16.36984 -16.10790 -15.88405 -15.40148 -15.06683 -14.89147 -14.43710 -14.32299 -14.25432 -13.70956 -13.66720 -13.57907 -13.32795 -13.19774 -12.95437 -12.83343 -12.61373 -12.40671 -11.89225 -11.57016 -11.32548 -11.14844 -11.11220 -10.89218 -10.83393 -10.81433 -10.55624 -10.33579 -9.91205 -9.64515 -9.50460 -9.16530 -9.04770 -8.83470 -8.36028 -6.61500 -6.31531 -4.03009 0.92056 2.42834 2.44642 2.66406 2.86752 2.93167 3.01166 3.14910 3.20802 3.24257 3.56134 3.97135 4.11029 4.24559 4.39651 4.64664 4.75843 4.89828 4.91405 5.00246 5.04113 5.08534 5.14176 5.16099 5.32079 5.35468 5.44357 5.48995 5.49102 5.67384 5.72049 5.75370 5.90736 5.98925 5.99527 6.13782 6.19056 6.44149 6.53644 6.76176 6.98362 7.49168 7.50989 7.55061 7.72543 8.25193 8.43071 9.14219 10.75726 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008872 B = 0.002982 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3155.071268 B = 9386.230919 C =12014.576747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.129 4.129 3 C 0.134 3.866 4 H 0.096 0.904 5 C 0.114 3.886 6 N -0.728 5.728 7 C 0.598 3.402 8 O -0.526 6.526 9 C -0.097 4.097 10 C 0.075 3.925 11 N -0.497 5.497 12 C 0.245 3.755 13 C -0.078 4.078 14 N -0.551 5.551 15 H 0.423 0.577 16 N -0.738 5.738 17 C 0.531 3.469 18 O -0.506 6.506 19 C -0.155 4.155 20 S -0.057 6.057 21 C -0.538 4.538 22 H 0.072 0.928 23 C 0.075 3.925 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.281 1.281 28 H -0.272 1.272 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.399 0.601 37 H 0.184 0.816 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.398 0.602 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.955 -2.686 -6.823 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.028 3.972 4 H 0.114 0.886 5 C -0.010 4.010 6 N -0.380 5.380 7 C 0.385 3.615 8 O -0.402 6.402 9 C -0.212 4.212 10 C -0.079 4.079 11 N -0.217 5.217 12 C -0.018 4.018 13 C -0.136 4.136 14 N -0.156 5.156 15 H 0.262 0.738 16 N -0.393 5.393 17 C 0.318 3.682 18 O -0.380 6.380 19 C -0.306 4.306 20 S 0.170 5.830 21 C -0.686 4.686 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.744 3.256 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.201 0.799 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.232 0.768 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.727 -2.911 -8.567 19.903 hybrid contribution -0.527 0.317 2.694 2.763 sum 17.200 -2.595 -5.873 18.360 Atomic orbital electron populations 1.21805 0.93932 1.00835 1.03822 1.21876 0.97858 0.94756 1.02335 1.21267 0.92178 0.94976 0.88751 0.88601 1.21749 0.92889 0.82754 1.03606 1.45878 1.07065 1.10348 1.74707 1.16824 0.82074 0.86086 0.76566 1.90863 1.55861 1.43960 1.49489 1.21089 0.93394 0.87055 1.19674 1.22677 0.94821 0.91174 0.99244 1.70241 1.20234 1.10504 1.20768 1.23550 0.85206 0.92310 1.00780 1.20368 1.03360 0.86017 1.03879 1.43302 1.10716 1.06764 1.54866 0.73779 1.46160 1.17499 1.59536 1.16133 1.20289 0.80757 0.77545 0.89634 1.90728 1.50146 1.57074 1.40022 1.23555 1.07155 1.02791 0.97111 1.85391 1.06351 1.70800 1.20465 1.22857 1.04022 1.42228 0.99518 0.90978 1.24985 0.94788 0.95507 0.98198 1.70007 1.05058 1.40812 1.34316 0.86178 0.77689 0.79360 0.82354 1.20237 1.20687 1.19677 0.93476 0.91758 0.92004 0.91056 0.91598 0.89588 0.90370 0.76681 0.79869 0.89365 0.89971 0.88516 0.76796 0.89261 0.89506 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 8.52 37.16 0.32 -1.52 16 2 C -0.13 -1.20 5.61 -26.73 -0.15 -1.35 16 3 C 0.13 1.24 2.42 -67.93 -0.16 1.08 16 4 H 0.10 1.04 7.58 -51.93 -0.39 0.65 16 5 C 0.11 0.92 5.23 -4.04 -0.02 0.90 16 6 N -0.73 -6.09 5.38 -61.59 -0.33 -6.42 16 7 C 0.60 6.37 7.79 -12.81 -0.10 6.27 16 8 O -0.53 -7.18 16.90 5.21 0.09 -7.10 16 9 C -0.10 -0.97 7.07 -82.15 -0.58 -1.55 16 10 C 0.08 0.82 11.66 -17.48 -0.20 0.61 16 11 N -0.50 -5.57 11.20 -10.59 -0.12 -5.69 16 12 C 0.25 2.15 8.12 -155.61 -1.26 0.88 16 13 C -0.08 -0.41 10.51 36.00 0.38 -0.03 16 14 N -0.55 -4.35 6.07 -7.02 -0.04 -4.39 16 15 H 0.42 2.32 8.32 -40.82 -0.34 1.98 16 16 N -0.74 -7.73 4.47 -53.80 -0.24 -7.97 16 17 C 0.53 8.23 6.42 -10.98 -0.07 8.16 16 18 O -0.51 -9.62 13.00 5.56 0.07 -9.55 16 19 C -0.16 -2.78 6.16 36.01 0.22 -2.55 16 20 S -0.06 -1.42 20.57 -107.50 -2.21 -3.63 16 21 C -0.54 -14.58 9.50 30.94 0.29 -14.28 16 22 H 0.07 1.85 7.80 -52.48 -0.41 1.45 16 23 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 24 N -0.87 -25.17 13.22 55.49 0.73 -24.44 16 25 Si 0.92 20.62 29.55 -169.99 -5.02 15.59 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.98 5.65 -51.93 -0.29 0.69 16 31 H 0.06 0.85 7.85 -51.93 -0.41 0.44 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.40 2.92 7.38 -40.82 -0.30 2.62 16 37 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.40 3.39 8.60 -40.82 -0.35 3.04 16 42 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 43 H 0.09 1.40 8.14 -51.92 -0.42 0.98 16 44 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -35.34 387.15 -8.96 -44.30 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.28 Total: 4.91 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.44 Total: -1.45 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.00 Total: -48.91 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: 0.16 Total: -16.64 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.21 Total: -3.63 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.34 -8.96 -44.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759304563.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.278 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds