Wall clock time and date at job start Sat Apr 11 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.49965 * 2 1 4 4 C 1.53118 * 109.50597 * 239.91861 * 2 1 3 5 5 C 1.53123 * 109.15595 * 297.71417 * 4 2 1 6 6 H 1.08997 * 109.50850 * 62.28716 * 5 4 2 7 7 C 1.50702 * 109.53092 * 182.38251 * 5 4 2 8 8 O 1.20826 * 120.00158 * 359.82372 * 7 5 4 9 9 O 1.34230 * 120.00053 * 179.82116 * 7 5 4 10 10 C 1.53038 * 109.28042 * 302.34107 * 5 4 2 11 11 N 1.46851 * 109.51905 * 59.18165 * 10 5 4 12 12 C 1.46904 * 110.99684 * 174.16120 * 11 10 5 13 13 N 1.46500 * 109.47058 * 66.04753 * 12 11 10 14 14 N 1.40169 * 126.14498 * 90.02178 * 13 12 11 15 15 C 1.32241 * 107.75768 * 179.97438 * 14 13 12 16 16 C 1.40118 * 125.92739 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99952 * 174.08655 * 16 15 14 18 18 C 1.40039 * 119.99507 * 354.09152 * 16 15 14 19 19 N 1.30797 * 120.00258 * 6.03158 * 18 16 15 20 20 Si 1.86801 * 119.99638 * 186.02895 * 18 16 15 21 21 H 1.48498 * 109.47097 * 94.98136 * 20 18 16 22 22 H 1.48495 * 109.47171 * 214.98021 * 20 18 16 23 23 H 1.48504 * 109.47129 * 334.98448 * 20 18 16 24 24 N 1.38507 * 108.14647 * 0.02562 * 15 14 13 25 25 C 1.46499 * 125.83161 * 180.02562 * 24 15 14 26 26 C 1.34729 * 108.32883 * 359.75456 * 24 15 14 27 27 S 1.71197 * 125.96940 * 180.24294 * 26 24 15 28 28 C 1.46846 * 111.19956 * 298.25813 * 11 10 5 29 29 H 1.08992 * 109.46805 * 180.08436 * 1 2 3 30 30 H 1.08995 * 109.47138 * 300.08263 * 1 2 3 31 31 H 1.08993 * 109.47104 * 60.08110 * 1 2 3 32 32 H 1.08996 * 109.52339 * 177.80858 * 4 2 1 33 33 H 1.09002 * 109.52117 * 57.61605 * 4 2 1 34 34 H 0.96697 * 117.00338 * 180.02562 * 9 7 5 35 35 H 1.09000 * 109.45912 * 299.16825 * 10 5 4 36 36 H 1.08990 * 109.46264 * 179.19993 * 10 5 4 37 37 H 1.08994 * 109.46689 * 186.04595 * 12 11 10 38 38 H 1.08999 * 109.46757 * 306.04757 * 12 11 10 39 39 H 0.96995 * 119.99940 * 180.02562 * 19 18 16 40 40 H 1.08999 * 109.47423 * 89.99970 * 25 24 15 41 41 H 1.09005 * 109.46792 * 210.00148 * 25 24 15 42 42 H 1.09001 * 109.47216 * 329.99688 * 25 24 15 43 43 H 1.08995 * 109.45959 * 181.75886 * 28 11 10 44 44 H 1.08995 * 109.46334 * 301.72949 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2489 5 6 1.5750 -2.1814 -1.2113 6 1 0.4858 -2.2158 -1.2304 7 6 2.1226 -2.9166 -2.4075 8 8 2.8125 -2.3344 -3.2106 9 8 1.8440 -4.2182 -2.5807 10 6 2.0847 -2.8420 0.0717 11 7 1.5676 -2.1137 1.2373 12 6 1.9224 -2.8002 2.4867 13 7 3.3755 -2.7628 2.6688 14 7 4.0997 -1.7651 3.3359 15 6 5.3797 -2.0932 3.2844 16 6 6.4394 -1.3588 3.8331 17 1 7.4409 -1.7627 3.8185 18 6 6.1997 -0.1010 4.4003 19 7 4.9738 0.3373 4.5250 20 14 7.6311 0.9506 4.9790 21 1 8.0134 1.9010 3.9040 22 1 7.2298 1.7092 6.1908 23 1 8.7880 0.0774 5.3021 24 7 5.4913 -3.2882 2.5930 25 6 6.7388 -4.0026 2.3111 26 6 4.2560 -3.6842 2.2294 27 16 3.8719 -5.1071 1.3584 28 6 2.0410 -0.7237 1.2479 29 1 -0.3633 -1.0276 0.0015 30 1 -0.3633 0.5151 0.8892 31 1 -0.3633 0.5125 -0.8907 32 1 3.1306 -0.6897 -1.2691 33 1 1.6443 -0.2369 -2.1398 34 1 2.2179 -4.6469 -3.3626 35 1 3.1744 -2.8196 0.0835 36 1 1.7424 -3.8761 0.1084 37 1 1.4380 -2.3008 3.3258 38 1 1.5887 -3.8368 2.4391 39 1 4.8078 1.2086 4.9176 40 1 6.9502 -4.6989 3.1226 41 1 6.6384 -4.5539 1.3761 42 1 7.5561 -3.2865 2.2246 43 1 1.6670 -0.2195 2.1389 44 1 3.1308 -0.7113 1.2542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589282219.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:16 Heat of formation + Delta-G solvation = -15.319065 kcal Electronic energy + Delta-G solvation = -29257.369295 eV Core-core repulsion = 25337.122184 eV Total energy + Delta-G solvation = -3920.247110 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09952 -40.40112 -38.68245 -36.03395 -35.23493 -34.07801 -32.98497 -31.90475 -30.56129 -27.88066 -26.83073 -26.50468 -25.34448 -24.59045 -22.62039 -21.57178 -21.02785 -20.76615 -18.63167 -17.96853 -17.71294 -17.02231 -16.64340 -15.91611 -15.79803 -15.50041 -15.11141 -14.86267 -14.62285 -14.26371 -13.95871 -13.88305 -13.54125 -13.49699 -13.06485 -12.81551 -12.29363 -12.27253 -12.00246 -11.87714 -11.62667 -11.54061 -11.41256 -11.29011 -11.09359 -11.04196 -10.68947 -10.65489 -10.59887 -10.50591 -10.26373 -10.20478 -10.02949 -9.62232 -9.26815 -8.94394 -8.44294 -7.13092 -6.83942 -6.71466 -5.21729 2.24034 2.34134 2.50974 2.72350 2.86509 2.90228 3.17319 3.34453 3.45091 3.59127 4.04278 4.17415 4.71739 4.75493 4.90963 4.99977 5.10562 5.28746 5.43230 5.45621 5.49579 5.57954 5.78328 5.80787 5.85268 5.87899 5.91611 6.01579 6.04415 6.09049 6.16200 6.21224 6.36971 6.38004 6.44378 6.51699 6.53208 6.64503 6.72849 6.92580 7.09778 7.21159 7.49730 7.68574 8.03617 8.15537 8.27756 9.05852 9.84542 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011852 B = 0.004586 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.960575 B = 6103.885470 C = 7159.056029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 H 0.077 0.923 4 C -0.100 4.100 5 C -0.078 4.078 6 H 0.115 0.885 7 C 0.490 3.510 8 O -0.522 6.522 9 O -0.507 6.507 10 C 0.067 3.933 11 N -0.525 5.525 12 C 0.311 3.689 13 N -0.402 5.402 14 N -0.340 5.340 15 C 0.373 3.627 16 C -0.438 4.438 17 H 0.097 0.903 18 C 0.078 3.922 19 N -0.736 5.736 20 Si 0.927 3.073 21 H -0.266 1.266 22 H -0.272 1.272 23 H -0.259 1.259 24 N -0.515 5.515 25 C 0.099 3.901 26 C 0.463 3.537 27 S -0.708 6.708 28 C 0.060 3.940 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.406 0.594 35 H 0.048 0.952 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.286 0.714 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 1.344 -4.863 6.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.095 0.905 4 C -0.137 4.137 5 C -0.098 4.098 6 H 0.133 0.867 7 C 0.332 3.668 8 O -0.411 6.411 9 O -0.318 6.318 10 C -0.061 4.061 11 N -0.249 5.249 12 C 0.101 3.899 13 N -0.192 5.192 14 N -0.172 5.172 15 C 0.124 3.876 16 C -0.479 4.479 17 H 0.115 0.885 18 C -0.149 4.149 19 N -0.360 5.360 20 Si 0.750 3.250 21 H -0.191 1.191 22 H -0.197 1.197 23 H -0.183 1.183 24 N -0.216 5.216 25 C -0.044 4.044 26 C 0.094 3.906 27 S -0.584 6.584 28 C -0.068 4.068 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.264 0.736 35 H 0.066 0.934 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.110 1.760 -4.859 8.003 hybrid contribution 2.586 0.399 0.028 2.617 sum -3.525 2.160 -4.830 6.358 Atomic orbital electron populations 1.21780 0.94524 1.02591 1.00784 1.21200 0.96662 0.98912 0.93858 0.90484 1.21529 1.01524 0.92330 0.98349 1.21164 1.02827 0.94763 0.91009 0.86686 1.23456 0.76823 0.80020 0.86523 1.90685 1.36457 1.68484 1.45475 1.84588 1.71728 1.25320 1.50130 1.22308 0.98792 0.98260 0.86748 1.62569 1.57264 1.03061 1.01992 1.22538 0.73371 1.01459 0.92511 1.50439 1.08119 1.17267 1.43361 1.79372 0.99954 1.09852 1.28024 1.21305 0.93687 0.81958 0.90638 1.18365 0.93081 1.01044 1.35450 0.88548 1.25814 0.97397 0.97586 0.94085 1.69865 1.20451 1.17810 1.27841 0.85967 0.80469 0.79628 0.78927 1.19136 1.19721 1.18269 1.46039 1.06386 1.21726 1.47423 1.21757 0.82989 0.96803 1.02848 1.23097 0.83804 0.92785 0.90948 1.92799 1.89148 1.18906 1.57539 1.22118 0.99222 0.87529 0.97921 0.91330 0.92770 0.93598 0.91438 0.91179 0.73621 0.93351 0.87585 0.87437 0.86908 0.90338 0.91494 0.89264 0.89782 0.89981 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.75 37.16 0.33 -1.29 16 2 C -0.09 -1.20 3.21 -90.54 -0.29 -1.49 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C -0.10 -1.45 4.09 -26.61 -0.11 -1.55 16 5 C -0.08 -1.13 2.44 -91.69 -0.22 -1.36 16 6 H 0.12 1.46 6.58 -51.93 -0.34 1.12 16 7 C 0.49 7.53 7.63 36.01 0.27 7.80 16 8 O -0.52 -9.28 16.74 -18.75 -0.31 -9.59 16 9 O -0.51 -6.72 13.34 -39.26 -0.52 -7.24 16 10 C 0.07 1.13 3.23 -3.83 -0.01 1.12 16 11 N -0.52 -8.43 4.15 -238.58 -0.99 -9.42 16 12 C 0.31 5.52 6.25 -63.31 -0.40 5.12 16 13 N -0.40 -8.59 2.84 -65.05 -0.18 -8.77 16 14 N -0.34 -8.07 9.86 31.21 0.31 -7.76 16 15 C 0.37 8.79 7.49 -155.26 -1.16 7.63 16 16 C -0.44 -9.87 8.94 -38.20 -0.34 -10.21 16 17 H 0.10 1.98 7.21 -52.49 -0.38 1.60 16 18 C 0.08 1.69 5.49 -17.32 -0.10 1.60 16 19 N -0.74 -16.92 11.93 55.55 0.66 -16.25 16 20 Si 0.93 16.18 29.56 -169.99 -5.03 11.16 16 21 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 22 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 23 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 24 N -0.51 -11.25 3.17 -124.65 -0.39 -11.64 16 25 C 0.10 1.74 10.63 59.85 0.64 2.38 16 26 C 0.46 10.37 6.66 -86.93 -0.58 9.79 16 27 S -0.71 -16.20 27.04 -107.50 -2.91 -19.11 16 28 C 0.06 0.99 4.40 -3.83 -0.02 0.98 16 29 H 0.07 0.81 6.01 -51.93 -0.31 0.50 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 1.14 8.05 -51.93 -0.42 0.72 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.41 3.61 9.10 45.56 0.41 4.02 16 35 H 0.05 1.01 6.29 -51.93 -0.33 0.68 16 36 H 0.11 1.91 7.37 -51.93 -0.38 1.53 16 37 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 38 H 0.11 1.97 7.56 -51.93 -0.39 1.58 16 39 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.09 1.56 7.62 -51.93 -0.40 1.16 16 42 H 0.08 1.31 7.39 -51.93 -0.38 0.93 16 43 H 0.08 1.40 8.12 -51.93 -0.42 0.98 16 44 H 0.05 1.04 7.04 -51.93 -0.37 0.67 16 LS Contribution 364.66 15.07 5.50 5.50 Total: -1.00 -29.49 364.66 -11.24 -40.73 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -5.37 Total: 11.91 kcal Atomic # 6 Polarization: 22.49 SS G_CDS: -1.99 Total: 20.50 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.60 Total: -53.85 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -0.84 Total: -16.83 kcal Atomic # 14 Polarization: 16.18 SS G_CDS: -5.03 Total: 11.16 kcal Atomic # 16 Polarization: -16.20 SS G_CDS: -2.91 Total: -19.11 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.49 -11.24 -40.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589282219.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.412 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds