Wall clock time and date at job start Sat Apr 11 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.50228 * 2 1 4 4 C 1.53120 * 109.50518 * 120.07529 * 2 1 3 5 5 C 1.53123 * 109.15883 * 62.28620 * 4 2 1 6 6 H 1.08994 * 109.50288 * 297.71304 * 5 4 2 7 7 C 1.50706 * 109.53453 * 177.61751 * 5 4 2 8 8 O 1.20821 * 120.00077 * 0.17463 * 7 5 4 9 9 O 1.34229 * 119.99637 * 180.17997 * 7 5 4 10 10 C 1.53037 * 109.27608 * 57.65815 * 5 4 2 11 11 N 1.46849 * 109.52105 * 300.81591 * 10 5 4 12 12 C 1.46899 * 110.99600 * 185.84128 * 11 10 5 13 13 N 1.46500 * 109.47184 * 66.05310 * 12 11 10 14 14 N 1.40161 * 126.14970 * 90.02153 * 13 12 11 15 15 C 1.32236 * 107.76198 * 179.97438 * 14 13 12 16 16 C 1.40115 * 125.93076 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00174 * 188.28383 * 16 15 14 18 18 C 1.40036 * 119.99981 * 8.28204 * 16 15 14 19 19 N 1.30791 * 120.00415 * 191.45586 * 18 16 15 20 20 Si 1.86800 * 119.99728 * 11.45661 * 18 16 15 21 21 H 1.48505 * 109.47257 * 269.99895 * 20 18 16 22 22 H 1.48505 * 109.47245 * 149.99972 * 20 18 16 23 23 H 1.48495 * 109.47364 * 29.99936 * 20 18 16 24 24 N 1.38511 * 108.14438 * 0.23172 * 15 14 13 25 25 C 1.46501 * 125.83271 * 179.77261 * 24 15 14 26 26 C 1.34725 * 108.32818 * 359.61626 * 24 15 14 27 27 S 1.71198 * 125.97074 * 180.14038 * 26 24 15 28 28 C 1.46848 * 111.19534 * 61.75032 * 11 10 5 29 29 H 1.09002 * 109.47603 * 299.92363 * 1 2 3 30 30 H 1.09002 * 109.47335 * 59.92177 * 1 2 3 31 31 H 1.09002 * 109.47221 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.52206 * 302.38368 * 4 2 1 33 33 H 1.09000 * 109.52579 * 182.18868 * 4 2 1 34 34 H 0.96700 * 116.99581 * 179.97438 * 9 7 5 35 35 H 1.09007 * 109.45859 * 180.80527 * 10 5 4 36 36 H 1.09000 * 109.45814 * 60.83109 * 10 5 4 37 37 H 1.08994 * 109.47695 * 306.04695 * 12 11 10 38 38 H 1.09008 * 109.47036 * 186.04833 * 12 11 10 39 39 H 0.97001 * 119.99867 * 354.76081 * 19 18 16 40 40 H 1.09004 * 109.47155 * 89.99553 * 25 24 15 41 41 H 1.08999 * 109.46779 * 209.99300 * 25 24 15 42 42 H 1.09000 * 109.47259 * 329.99479 * 25 24 15 43 43 H 1.08993 * 109.46870 * 58.26954 * 28 11 10 44 44 H 1.09001 * 109.45762 * 178.24208 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 1.2490 5 6 1.5749 -2.1813 1.2116 6 1 0.4857 -2.2156 1.2307 7 6 2.1225 -2.9164 2.4079 8 8 2.8123 -2.3341 3.2109 9 8 1.8438 -4.2179 2.5811 10 6 2.0846 -2.8420 -0.0713 11 7 1.5675 -2.1139 -1.2370 12 6 1.9223 -2.8005 -2.4863 13 7 1.2319 -4.0912 -2.5472 14 7 -0.0336 -4.3266 -3.1018 15 6 -0.3019 -5.6140 -2.9628 16 6 -1.4708 -6.2605 -3.3855 17 1 -1.6507 -7.2882 -3.1063 18 6 -2.4060 -5.5742 -4.1700 19 7 -3.5897 -6.0903 -4.3778 20 14 -1.9628 -3.9217 -4.9197 21 1 -2.3286 -2.8356 -3.9754 22 1 -2.7048 -3.7409 -6.1934 23 1 -0.5028 -3.8747 -5.1866 24 7 0.7707 -6.2113 -2.3215 25 6 0.8778 -7.6292 -1.9690 26 6 1.7000 -5.2661 -2.0804 27 16 3.2087 -5.5127 -1.3098 28 6 2.0410 -0.7239 -1.2478 29 1 -0.3634 0.5126 0.8907 30 1 -0.3634 0.5150 -0.8893 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6441 -0.2367 2.1399 33 1 3.1305 -0.6897 1.2692 34 1 2.2177 -4.6466 3.3631 35 1 1.7423 -3.8762 -0.1079 36 1 3.1743 -2.8195 -0.0831 37 1 2.9996 -2.9628 -2.5185 38 1 1.6217 -2.1873 -3.3359 39 1 -3.7943 -6.9811 -4.0531 40 1 1.3409 -8.1742 -2.7917 41 1 1.4893 -7.7356 -1.0730 42 1 -0.1169 -8.0328 -1.7801 43 1 3.1308 -0.7114 -1.2541 44 1 1.6669 -0.2198 -2.1388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589282220.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:19 Heat of formation + Delta-G solvation = -36.565854 kcal Electronic energy + Delta-G solvation = -29071.553526 eV Core-core repulsion = 25150.385086 eV Total energy + Delta-G solvation = -3921.168440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.93345 -41.71646 -40.00619 -37.29446 -36.79285 -35.91173 -34.67736 -33.16679 -32.86713 -29.53839 -28.30630 -27.72192 -26.65565 -25.88716 -24.31681 -23.07799 -22.44271 -22.20582 -20.32337 -19.76064 -19.14701 -18.83016 -18.21580 -17.41885 -17.40059 -17.04741 -16.52356 -16.35397 -15.90032 -15.59156 -15.47223 -15.09859 -14.99508 -14.85964 -14.59456 -14.45093 -14.05764 -13.92171 -13.62658 -13.21142 -13.07314 -13.00235 -12.88464 -12.61304 -12.50781 -12.46962 -12.23623 -11.95412 -11.77123 -11.72470 -11.60398 -11.45285 -11.40418 -11.16230 -10.87652 -10.69544 -9.59531 -9.52163 -8.76086 -8.58877 -7.17415 0.35902 0.62682 1.06160 1.09280 1.41248 1.59876 1.76019 1.90210 2.04727 2.17067 2.39314 2.81536 2.90142 3.47641 3.55187 3.68468 3.85876 3.93672 4.02675 4.11233 4.19855 4.33999 4.36800 4.37091 4.43036 4.59168 4.61033 4.65144 4.66939 4.78885 4.81145 4.89193 5.00552 5.02604 5.11094 5.21758 5.25942 5.28263 5.51324 5.54108 5.58338 5.74754 5.79360 6.07169 6.14078 6.34425 6.91132 6.92858 7.85452 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011750 B = 0.004804 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.358193 B = 5826.531047 C = 6934.166864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 H 0.111 0.889 4 C -0.093 4.093 5 C -0.077 4.077 6 H 0.112 0.888 7 C 0.492 3.508 8 O -0.542 6.542 9 O -0.513 6.513 10 C 0.083 3.917 11 N -0.550 5.550 12 C 0.315 3.685 13 N -0.358 5.358 14 N -0.429 5.429 15 C 0.368 3.632 16 C -0.492 4.492 17 H 0.096 0.904 18 C 0.045 3.955 19 N -0.806 5.806 20 Si 1.122 2.878 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.257 1.257 24 N -0.515 5.515 25 C 0.096 3.904 26 C 0.468 3.532 27 S -0.707 6.707 28 C 0.058 3.942 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.424 0.576 35 H 0.066 0.934 36 H 0.038 0.962 37 H 0.081 0.919 38 H 0.126 0.874 39 H 0.291 0.709 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.050 0.950 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.869 8.615 5.360 11.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 H 0.129 0.871 4 C -0.131 4.131 5 C -0.097 4.097 6 H 0.129 0.871 7 C 0.335 3.665 8 O -0.432 6.432 9 O -0.325 6.325 10 C -0.046 4.046 11 N -0.277 5.277 12 C 0.105 3.895 13 N -0.145 5.145 14 N -0.265 5.265 15 C 0.121 3.879 16 C -0.535 4.535 17 H 0.114 0.886 18 C -0.178 4.178 19 N -0.430 5.430 20 Si 0.947 3.053 21 H -0.202 1.202 22 H -0.222 1.222 23 H -0.183 1.183 24 N -0.215 5.215 25 C -0.045 4.045 26 C 0.098 3.902 27 S -0.583 6.583 28 C -0.069 4.069 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.285 0.715 35 H 0.084 0.916 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.144 0.856 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.280 10.927 4.501 12.569 hybrid contribution 0.915 -3.042 1.490 3.508 sum 5.195 7.885 5.991 11.183 Atomic orbital electron populations 1.21753 0.94519 1.01577 1.01888 1.21184 0.96637 0.99692 0.91962 0.87074 1.21531 1.01175 0.90795 0.99571 1.21175 1.02879 0.95958 0.89668 0.87057 1.23561 0.76271 0.80236 0.86426 1.90661 1.37523 1.68864 1.46182 1.84605 1.71679 1.25012 1.51238 1.22012 0.97058 0.97377 0.88160 1.61781 1.61281 1.03713 1.00909 1.22073 0.94138 0.78812 0.94481 1.49000 1.14120 1.06787 1.44553 1.77929 0.99625 1.12348 1.36602 1.21313 0.88733 0.87960 0.89904 1.19655 1.00500 1.01612 1.31697 0.88612 1.27869 0.90410 1.07305 0.92185 1.70626 1.18741 1.17308 1.36323 0.82666 0.76712 0.70678 0.75243 1.20153 1.22244 1.18282 1.46144 1.14115 1.10999 1.50211 1.22026 1.04672 0.74794 1.03025 1.23058 0.92732 0.84224 0.90172 1.92845 1.09792 1.92921 1.62719 1.22293 0.98435 0.85591 1.00579 0.92165 0.92083 0.93853 0.90228 0.91487 0.71494 0.91581 0.94353 0.90093 0.85586 0.89675 0.89769 0.88667 0.88449 0.93159 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 8.75 71.98 0.63 -2.16 16 2 C -0.08 -1.38 3.21 -10.74 -0.03 -1.41 16 3 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 4 C -0.09 -2.03 4.09 30.68 0.13 -1.91 16 5 C -0.08 -2.11 2.44 -11.48 -0.03 -2.14 16 6 H 0.11 3.12 6.58 -2.39 -0.02 3.10 16 7 C 0.49 14.37 7.63 71.24 0.54 14.92 16 8 O -0.54 -17.41 16.74 21.98 0.37 -17.05 16 9 O -0.51 -14.04 13.34 -51.41 -0.69 -14.72 16 10 C 0.08 2.62 3.53 86.33 0.30 2.92 16 11 N -0.55 -15.87 4.08 -908.70 -3.70 -19.58 16 12 C 0.32 10.08 5.98 170.81 1.02 11.10 16 13 N -0.36 -14.50 3.58 -359.72 -1.29 -15.79 16 14 N -0.43 -19.14 7.79 -55.17 -0.43 -19.57 16 15 C 0.37 16.57 7.19 133.52 0.96 17.53 16 16 C -0.49 -22.50 9.40 23.16 0.22 -22.28 16 17 H 0.10 4.25 7.27 -2.91 -0.02 4.23 16 18 C 0.05 2.09 5.52 85.28 0.47 2.56 16 19 N -0.81 -38.02 13.65 21.84 0.30 -37.72 16 20 Si 1.12 46.59 26.37 68.60 1.81 48.40 16 21 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 22 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 23 H -0.26 -10.74 6.27 99.48 0.62 -10.12 16 24 N -0.51 -21.32 3.17 -548.29 -1.74 -23.06 16 25 C 0.10 3.16 10.67 127.77 1.36 4.52 16 26 C 0.47 19.79 6.59 179.06 1.18 20.97 16 27 S -0.71 -30.64 27.20 -56.49 -1.54 -32.17 16 28 C 0.06 1.18 4.90 86.33 0.42 1.61 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 1.11 6.01 -2.39 -0.01 1.10 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.54 8.05 -2.39 -0.02 1.52 16 34 H 0.42 7.59 9.10 -74.06 -0.67 6.92 16 35 H 0.07 2.60 5.12 -2.38 -0.01 2.58 16 36 H 0.04 1.30 8.11 -2.39 -0.02 1.28 16 37 H 0.08 2.58 7.62 -2.39 -0.02 2.57 16 38 H 0.13 3.52 7.98 -2.38 -0.02 3.50 16 39 H 0.29 13.11 8.73 -92.71 -0.81 12.30 16 40 H 0.08 2.51 8.14 -2.38 -0.02 2.50 16 41 H 0.09 3.07 7.62 -2.39 -0.02 3.05 16 42 H 0.10 2.91 7.26 -2.39 -0.02 2.89 16 43 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.10 1.72 8.01 -2.39 -0.02 1.70 16 Total: -1.00 -62.25 362.62 0.52 -61.73 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.24 Total: 23.29 kcal Atomic # 6 Polarization: 39.07 SS G_CDS: 7.18 Total: 46.24 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -6.86 Total: -115.72 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.32 Total: -31.77 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.81 Total: 48.40 kcal Atomic # 16 Polarization: -30.64 SS G_CDS: -1.54 Total: -32.17 kcal Total: -62.25 0.52 -61.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589282220.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.165 kcal (2) G-P(sol) polarization free energy of solvation -62.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds