Wall clock time and date at job start Sat Apr 11 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.50406 * 2 1 4 4 C 1.53119 * 109.50154 * 239.91740 * 2 1 3 5 5 C 1.53113 * 109.16087 * 182.40228 * 4 2 1 6 6 H 1.08989 * 109.50675 * 297.71647 * 5 4 2 7 7 C 1.50706 * 109.50425 * 177.59451 * 5 4 2 8 8 O 1.20830 * 119.99589 * 0.02562 * 7 5 4 9 9 O 1.34223 * 119.99960 * 180.02562 * 7 5 4 10 10 C 1.53035 * 109.27734 * 57.66030 * 5 4 2 11 11 N 1.46851 * 109.52351 * 300.81978 * 10 5 4 12 12 C 1.46905 * 111.00244 * 185.84004 * 11 10 5 13 13 N 1.46501 * 109.46665 * 293.95232 * 12 11 10 14 14 N 1.40160 * 126.14397 * 90.02775 * 13 12 11 15 15 C 1.32241 * 107.75598 * 179.97438 * 14 13 12 16 16 C 1.40125 * 125.92380 * 179.97438 * 15 14 13 17 17 H 1.08000 * 119.99838 * 180.02562 * 16 15 14 18 18 C 1.40038 * 120.00295 * 0.02562 * 16 15 14 19 19 N 1.30800 * 119.99649 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00097 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46658 * 90.00364 * 20 18 16 22 22 H 1.48498 * 109.46889 * 210.00011 * 20 18 16 23 23 H 1.48499 * 109.47171 * 330.00259 * 20 18 16 24 24 N 1.38501 * 108.14797 * 0.02562 * 15 14 13 25 25 C 1.46502 * 125.83358 * 179.97438 * 24 15 14 26 26 C 1.34725 * 108.32695 * 359.75337 * 24 15 14 27 27 S 1.71201 * 125.96943 * 180.24215 * 26 24 15 28 28 C 1.46842 * 111.19620 * 61.73856 * 11 10 5 29 29 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46998 * 300.07664 * 1 2 3 31 31 H 1.09000 * 109.47050 * 60.07956 * 1 2 3 32 32 H 1.08999 * 109.52518 * 302.31643 * 4 2 1 33 33 H 1.09006 * 109.52039 * 62.50190 * 4 2 1 34 34 H 0.96703 * 116.99799 * 180.02562 * 9 7 5 35 35 H 1.09002 * 109.46556 * 60.83113 * 10 5 4 36 36 H 1.08998 * 109.46846 * 180.81555 * 10 5 4 37 37 H 1.08997 * 109.46693 * 53.95203 * 12 11 10 38 38 H 1.08996 * 109.46888 * 173.95207 * 12 11 10 39 39 H 0.96999 * 119.99511 * 179.97438 * 19 18 16 40 40 H 1.09006 * 109.46716 * 89.99727 * 25 24 15 41 41 H 1.08995 * 109.46899 * 209.99605 * 25 24 15 42 42 H 1.08997 * 109.47146 * 330.00044 * 25 24 15 43 43 H 1.09002 * 109.45960 * 178.24556 * 28 11 10 44 44 H 1.09004 * 109.46125 * 58.28247 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2489 5 6 3.5711 -0.7716 -1.2110 6 1 3.9677 0.2434 -1.2298 7 6 4.0804 -1.5338 -2.4072 8 8 3.3005 -1.9915 -3.2086 9 8 5.4002 -1.7042 -2.5823 10 6 4.0229 -1.4731 0.0718 11 7 3.5093 -0.7426 1.2376 12 6 4.0373 -1.3068 2.4870 13 7 3.5160 -2.6638 2.6686 14 7 4.1107 -3.8464 2.2078 15 6 3.3368 -4.8552 2.5715 16 6 3.5736 -6.2104 2.3055 17 1 2.8743 -6.9583 2.6489 18 6 4.7171 -6.5951 1.5944 19 7 5.5643 -5.6893 1.1790 20 14 5.0324 -8.4017 1.2392 21 1 4.4065 -8.7678 -0.0567 22 1 6.4957 -8.6441 1.1682 23 1 4.4455 -9.2292 2.3237 24 7 2.2511 -4.3397 3.2598 25 6 1.1523 -5.1189 3.8358 26 6 2.3808 -2.9998 3.3133 27 16 1.2922 -1.9134 4.0655 28 6 2.0410 -0.7239 1.2478 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6451 -1.7388 -1.2695 33 1 1.7157 -0.1864 -2.1399 34 1 5.6789 -2.1997 -3.3646 35 1 3.6374 -2.4926 0.0834 36 1 5.1120 -1.4962 0.1090 37 1 5.1258 -1.3389 2.4396 38 1 3.7284 -0.6835 3.3261 39 1 6.3566 -5.9558 0.6868 40 1 1.4004 -5.3939 4.8610 41 1 0.2411 -4.5208 3.8305 42 1 0.9980 -6.0215 3.2446 43 1 1.6906 -0.2030 2.1388 44 1 1.6648 -1.7469 1.2539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589282222.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:25 Heat of formation + Delta-G solvation = -36.117564 kcal Electronic energy + Delta-G solvation = -29232.194685 eV Core-core repulsion = 25311.045684 eV Total energy + Delta-G solvation = -3921.149001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.75297 -41.66467 -39.91337 -37.28658 -36.66640 -35.75613 -34.56144 -33.55010 -32.18147 -29.47134 -28.38490 -27.64672 -26.86929 -25.80181 -24.07306 -22.75007 -22.60371 -21.94152 -20.78057 -19.49525 -19.08999 -18.48308 -17.79024 -17.48069 -17.31544 -17.00988 -16.66753 -16.48799 -16.11145 -15.78936 -15.48707 -15.10469 -15.04868 -14.68384 -14.25421 -13.78966 -13.77645 -13.61123 -13.48477 -13.35246 -13.06525 -12.90718 -12.85159 -12.62967 -12.62137 -12.44496 -12.34133 -12.03290 -11.90424 -11.77524 -11.65238 -11.56670 -11.51107 -11.34826 -10.88167 -10.66172 -9.96843 -8.80488 -8.62288 -8.48516 -6.98514 0.53846 0.80873 1.05713 1.24652 1.40919 1.55309 1.70217 1.82245 1.99912 2.09551 2.41420 2.75373 3.05994 3.44263 3.61854 3.66630 3.80728 3.94609 4.05742 4.17427 4.35189 4.36837 4.40922 4.41850 4.49654 4.51623 4.62588 4.66412 4.68366 4.75353 4.83587 4.90393 4.95675 4.97184 5.06654 5.18486 5.24506 5.25580 5.38488 5.51521 5.64508 5.77219 5.86961 6.00889 6.45397 6.54776 6.89711 7.31057 8.20820 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008839 B = 0.005743 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3167.161074 B = 4874.431819 C = 7039.646004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 H 0.104 0.896 4 C -0.094 4.094 5 C -0.070 4.070 6 H 0.146 0.854 7 C 0.492 3.508 8 O -0.548 6.548 9 O -0.507 6.507 10 C 0.078 3.922 11 N -0.508 5.508 12 C 0.304 3.696 13 N -0.398 5.398 14 N -0.365 5.365 15 C 0.351 3.649 16 C -0.454 4.454 17 H 0.114 0.886 18 C 0.037 3.963 19 N -0.770 5.770 20 Si 1.000 3.000 21 H -0.266 1.266 22 H -0.269 1.269 23 H -0.248 1.248 24 N -0.519 5.519 25 C 0.095 3.905 26 C 0.456 3.544 27 S -0.726 6.726 28 C 0.068 3.932 29 H 0.032 0.968 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.089 0.911 34 H 0.426 0.574 35 H 0.011 0.989 36 H 0.089 0.911 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.291 0.709 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.093 0.907 44 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.380 4.143 -5.865 7.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.098 4.098 3 H 0.122 0.878 4 C -0.131 4.131 5 C -0.089 4.089 6 H 0.164 0.836 7 C 0.335 3.665 8 O -0.439 6.439 9 O -0.320 6.320 10 C -0.050 4.050 11 N -0.231 5.231 12 C 0.094 3.906 13 N -0.188 5.188 14 N -0.198 5.198 15 C 0.102 3.898 16 C -0.495 4.495 17 H 0.132 0.868 18 C -0.186 4.186 19 N -0.395 5.395 20 Si 0.819 3.181 21 H -0.190 1.190 22 H -0.194 1.194 23 H -0.171 1.171 24 N -0.220 5.220 25 C -0.046 4.046 26 C 0.085 3.915 27 S -0.602 6.602 28 C -0.060 4.060 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.287 0.713 35 H 0.030 0.970 36 H 0.107 0.893 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 0.717 5.800 -5.946 8.338 hybrid contribution 0.023 -2.901 -0.483 2.941 sum 0.740 2.899 -6.430 7.092 Atomic orbital electron populations 1.21680 0.93691 1.01123 1.02890 1.21188 0.96380 1.00461 0.91751 0.87811 1.21522 0.91649 1.00430 0.99529 1.21098 0.97444 1.01490 0.88906 0.83594 1.23517 0.80248 0.76444 0.86270 1.90690 1.58178 1.48373 1.46630 1.84520 1.24878 1.71159 1.51415 1.21794 1.00649 0.93924 0.88656 1.62660 1.09794 1.49390 1.01245 1.22819 0.99432 0.74395 0.93912 1.50683 1.16399 1.09943 1.41727 1.79283 1.20481 0.86825 1.33186 1.21669 0.82066 0.96327 0.89726 1.18861 1.08909 0.87761 1.33971 0.86845 1.26791 0.93868 1.05027 0.92927 1.69945 1.08673 1.37465 1.23394 0.84896 0.78519 0.74844 0.79800 1.19038 1.19362 1.17079 1.46287 1.23009 1.04830 1.47828 1.21998 0.87330 0.95879 0.99433 1.23094 0.90606 0.87229 0.90577 1.92639 1.49803 1.51815 1.65919 1.22391 0.85356 0.97980 1.00272 0.94848 0.91858 0.90325 0.94679 0.89207 0.71256 0.97045 0.89273 0.86653 0.86265 0.89800 0.90036 0.89264 0.87967 0.88854 0.98476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.20 71.98 0.66 -2.77 16 2 C -0.08 -2.12 2.88 -10.74 -0.03 -2.16 16 3 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.09 -2.64 3.87 30.67 0.12 -2.52 16 5 C -0.07 -1.93 2.79 -11.49 -0.03 -1.96 16 6 H 0.15 3.14 8.14 -2.39 -0.02 3.12 16 7 C 0.49 14.38 7.63 71.24 0.54 14.92 16 8 O -0.55 -19.13 16.73 21.95 0.37 -18.76 16 9 O -0.51 -12.11 13.35 -51.35 -0.69 -12.80 16 10 C 0.08 2.64 4.40 86.32 0.38 3.02 16 11 N -0.51 -16.65 4.87 -908.71 -4.42 -21.07 16 12 C 0.30 11.04 6.26 170.80 1.07 12.11 16 13 N -0.40 -17.57 2.89 -359.73 -1.04 -18.61 16 14 N -0.37 -17.99 10.00 -55.16 -0.55 -18.54 16 15 C 0.35 16.94 7.50 133.52 1.00 17.94 16 16 C -0.45 -20.59 8.98 23.16 0.21 -20.38 16 17 H 0.11 4.56 7.11 -2.91 -0.02 4.54 16 18 C 0.04 1.63 5.50 85.28 0.47 2.10 16 19 N -0.77 -36.21 11.90 21.84 0.26 -35.95 16 20 Si 1.00 32.67 29.56 68.60 2.03 34.69 16 21 H -0.27 -8.61 7.11 99.48 0.71 -7.90 16 22 H -0.27 -8.57 7.11 99.48 0.71 -7.87 16 23 H -0.25 -7.59 7.11 99.48 0.71 -6.89 16 24 N -0.52 -22.98 3.17 -548.30 -1.74 -24.72 16 25 C 0.10 3.30 10.64 127.77 1.36 4.66 16 26 C 0.46 20.82 6.44 179.06 1.15 21.97 16 27 S -0.73 -33.37 26.99 -56.49 -1.52 -34.90 16 28 C 0.07 2.33 3.24 86.33 0.28 2.61 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.03 1.22 8.04 -2.39 -0.02 1.20 16 33 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.43 6.50 9.10 -74.06 -0.67 5.83 16 35 H 0.01 0.49 7.20 -2.39 -0.02 0.47 16 36 H 0.09 2.98 8.06 -2.39 -0.02 2.96 16 37 H 0.12 3.92 8.06 -2.39 -0.02 3.90 16 38 H 0.12 4.25 7.64 -2.39 -0.02 4.23 16 39 H 0.29 12.42 8.30 -92.71 -0.77 11.65 16 40 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 41 H 0.09 3.08 7.62 -2.39 -0.02 3.06 16 42 H 0.10 3.09 7.32 -2.39 -0.02 3.07 16 43 H 0.09 3.45 6.80 -2.39 -0.02 3.44 16 44 H 0.00 -0.14 6.52 -2.39 -0.02 -0.16 16 Total: -1.00 -65.58 368.88 0.23 -65.35 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: 0.36 Total: 35.78 kcal Atomic # 6 Polarization: 42.36 SS G_CDS: 7.18 Total: 49.54 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -7.49 Total: -118.90 kcal Atomic # 8 Polarization: -31.24 SS G_CDS: -0.32 Total: -31.56 kcal Atomic # 14 Polarization: 32.67 SS G_CDS: 2.03 Total: 34.69 kcal Atomic # 16 Polarization: -33.37 SS G_CDS: -1.52 Total: -34.90 kcal Total: -65.58 0.23 -65.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589282222.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.231 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds