Wall clock time and date at job start Sat Apr 11 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46240 * 2 1 4 4 C 1.53031 * 109.46043 * 119.97328 * 2 1 3 5 5 C 1.53123 * 109.27824 * 179.19284 * 4 2 1 6 6 C 1.53117 * 109.15946 * 302.34639 * 5 4 2 7 7 H 1.09002 * 109.49897 * 297.71101 * 6 5 4 8 8 C 1.50700 * 109.50209 * 177.63789 * 6 5 4 9 9 O 1.20828 * 119.99522 * 239.99812 * 8 6 5 10 10 O 1.34220 * 120.00596 * 59.99406 * 8 6 5 11 11 C 1.53032 * 109.28205 * 57.65077 * 6 5 4 12 12 N 1.46843 * 109.45863 * 240.02412 * 2 1 3 13 13 C 1.46897 * 111.00283 * 54.14678 * 12 2 1 14 14 N 1.46504 * 109.47305 * 169.99702 * 13 12 2 15 15 N 1.40169 * 126.14888 * 270.27155 * 14 13 12 16 16 C 1.32235 * 107.75905 * 180.15056 * 15 14 13 17 17 C 1.40121 * 125.92573 * 179.88238 * 16 15 14 18 18 H 1.08001 * 120.00041 * 185.89886 * 17 16 15 19 19 C 1.40037 * 119.99961 * 5.90308 * 17 16 15 20 20 N 1.30803 * 119.99978 * 6.49716 * 19 17 16 21 21 Si 1.86799 * 119.99982 * 186.50392 * 19 17 16 22 22 H 1.48496 * 109.47055 * 265.01182 * 21 19 17 23 23 H 1.48496 * 109.47234 * 25.01317 * 21 19 17 24 24 H 1.48500 * 109.46737 * 145.01248 * 21 19 17 25 25 N 1.38498 * 108.14709 * 359.62119 * 16 15 14 26 26 C 1.46500 * 125.83611 * 180.24074 * 25 16 15 27 27 C 1.34724 * 108.33087 * 0.24379 * 25 16 15 28 28 S 1.71203 * 125.97161 * 180.02562 * 27 25 16 29 29 H 1.08994 * 109.47321 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46848 * 299.97958 * 1 2 3 31 31 H 1.09000 * 109.47023 * 59.97556 * 1 2 3 32 32 H 1.08998 * 109.50563 * 299.13354 * 4 2 1 33 33 H 1.09001 * 109.50604 * 59.21022 * 4 2 1 34 34 H 1.09004 * 109.52239 * 62.24878 * 5 4 2 35 35 H 1.08998 * 109.52087 * 182.43683 * 5 4 2 36 36 H 0.96697 * 117.00450 * 180.02562 * 10 8 6 37 37 H 1.08996 * 109.46652 * 180.80213 * 11 6 5 38 38 H 1.09007 * 109.46157 * 60.83563 * 11 6 5 39 39 H 1.08998 * 109.47439 * 49.99870 * 13 12 2 40 40 H 1.08995 * 109.47360 * 289.99560 * 13 12 2 41 41 H 0.96998 * 120.00112 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.47261 * 90.00083 * 26 25 16 43 43 H 1.09000 * 109.47410 * 210.00173 * 26 25 16 44 44 H 1.09007 * 109.47091 * 329.99856 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5710 -0.7361 1.2356 6 6 4.0547 -1.4189 -0.0467 7 1 3.7124 -2.4536 -0.0594 8 6 5.5606 -1.3865 -0.0966 9 8 6.1229 -0.8306 -1.0102 10 8 6.2771 -1.9751 0.8738 11 6 3.4864 -0.6779 -1.2591 12 7 2.0192 -0.6918 -1.1994 13 6 1.4373 -0.1106 -2.4165 14 7 2.1194 -0.6563 -3.5926 15 7 3.2593 -0.1223 -4.2092 16 6 3.5634 -0.8982 -5.2359 17 6 4.6364 -0.7122 -6.1176 18 1 4.7419 -1.3507 -6.9822 19 6 5.5721 0.3016 -5.8776 20 7 5.5189 0.9913 -4.7675 21 14 6.8963 0.6692 -7.1429 22 1 8.1353 -0.0701 -6.7917 23 1 6.4292 0.2425 -8.4864 24 1 7.1768 2.1273 -7.1564 25 7 2.6407 -1.9300 -5.2851 26 6 2.6190 -3.0151 -6.2691 27 6 1.7666 -1.7652 -4.2732 28 16 0.4400 -2.7861 -3.9142 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 1.6895 -0.1981 2.1399 33 1 1.6652 -1.7444 1.2580 34 1 3.9457 0.2870 1.2671 35 1 3.9379 -1.2863 2.1020 36 1 7.2400 -1.9278 0.7988 37 1 3.8174 -1.1700 -2.1736 38 1 3.8403 0.3532 -1.2532 39 1 1.5587 0.9723 -2.3961 40 1 0.3765 -0.3564 -2.4652 41 1 6.1668 1.6938 -4.6014 42 1 3.2146 -3.8507 -5.9017 43 1 1.5914 -3.3427 -6.4261 44 1 3.0349 -2.6591 -7.2117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589308278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:32 Heat of formation + Delta-G solvation = -6.820723 kcal Electronic energy + Delta-G solvation = -29141.547595 eV Core-core repulsion = 25221.669001 eV Total energy + Delta-G solvation = -3919.878594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.97137 -40.34067 -38.73428 -35.96163 -35.00587 -33.96792 -33.24407 -32.07770 -30.51641 -27.96787 -27.45336 -26.56761 -25.27247 -23.45586 -22.74709 -21.32153 -20.87905 -20.69889 -19.53727 -17.91552 -17.62551 -16.88924 -16.56376 -15.98190 -15.68882 -15.37720 -15.18081 -14.84427 -14.65436 -14.35756 -14.10672 -13.68797 -13.47267 -13.24823 -13.04548 -12.53464 -12.34961 -12.14901 -12.08004 -11.87252 -11.81347 -11.76677 -11.48573 -11.36386 -11.08960 -11.03910 -10.87494 -10.65797 -10.53356 -10.50272 -10.28277 -10.11945 -9.98556 -9.53083 -9.20802 -8.86316 -8.05600 -7.01823 -6.70186 -6.64318 -5.10989 2.32983 2.41141 2.60997 2.80019 2.92959 2.97181 3.08762 3.39618 3.54399 3.67552 4.06341 4.26208 4.66896 4.79007 4.84107 4.86865 5.08853 5.26006 5.34053 5.41999 5.47407 5.57088 5.62335 5.66252 5.68617 5.80721 5.87520 5.89645 5.95213 6.05418 6.09464 6.13107 6.22763 6.31460 6.42453 6.51329 6.58038 6.64491 6.83221 7.02427 7.14181 7.21644 7.62834 7.80769 8.07044 8.25923 8.37394 9.15809 9.95604 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009206 B = 0.005408 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.764414 B = 5176.126422 C = 7033.334738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.083 3.917 3 H 0.042 0.958 4 C -0.106 4.106 5 C -0.110 4.110 6 C -0.074 4.074 7 H 0.113 0.887 8 C 0.475 3.525 9 O -0.491 6.491 10 O -0.522 6.522 11 C 0.080 3.920 12 N -0.539 5.539 13 C 0.332 3.668 14 N -0.385 5.385 15 N -0.346 5.346 16 C 0.377 3.623 17 C -0.438 4.438 18 H 0.097 0.903 19 C 0.077 3.923 20 N -0.727 5.727 21 Si 0.926 3.074 22 H -0.267 1.267 23 H -0.259 1.259 24 H -0.273 1.273 25 N -0.517 5.517 26 C 0.101 3.899 27 C 0.479 3.521 28 S -0.703 6.703 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.405 0.595 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.117 0.883 41 H 0.285 0.715 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 0.332 8.762 8.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 H 0.060 0.940 4 C -0.144 4.144 5 C -0.147 4.147 6 C -0.094 4.094 7 H 0.131 0.869 8 C 0.315 3.685 9 O -0.376 6.376 10 O -0.334 6.334 11 C -0.048 4.048 12 N -0.267 5.267 13 C 0.121 3.879 14 N -0.171 5.171 15 N -0.178 5.178 16 C 0.129 3.871 17 C -0.480 4.480 18 H 0.115 0.885 19 C -0.150 4.150 20 N -0.351 5.351 21 Si 0.749 3.251 22 H -0.192 1.192 23 H -0.183 1.183 24 H -0.198 1.198 25 N -0.219 5.219 26 C -0.042 4.042 27 C 0.111 3.889 28 S -0.579 6.579 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.263 0.737 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.026 0.482 9.498 9.510 hybrid contribution 2.226 0.876 -1.266 2.706 sum 2.200 1.358 8.232 8.628 Atomic orbital electron populations 1.21914 0.93807 1.03356 1.01576 1.21626 0.95778 0.95343 0.89797 0.93979 1.21606 0.94124 1.02139 0.96544 1.21572 0.96718 1.00644 0.95813 1.21024 0.86203 1.03993 0.98154 0.86914 1.23500 0.91375 0.74795 0.78824 1.90854 1.72603 1.40305 1.33867 1.84518 1.25233 1.73083 1.50554 1.21809 0.86117 0.99777 0.97128 1.62092 1.07435 1.55494 1.01629 1.21824 0.95493 0.94217 0.76416 1.49115 1.24411 1.19765 1.23835 1.79382 1.02282 1.22088 1.14033 1.21271 0.89786 0.82503 0.93587 1.18329 1.05123 1.16465 1.08054 0.88544 1.25810 0.98424 0.94661 0.96128 1.69858 1.30418 1.14026 1.20779 0.85989 0.79901 0.78644 0.80544 1.19231 1.18253 1.19781 1.46008 1.24997 1.24923 1.25932 1.21743 1.04224 0.87824 0.90435 1.22903 0.91662 0.88998 0.85377 1.92705 1.26279 1.53462 1.85440 0.90922 0.92230 0.92468 0.90870 0.90329 0.91781 0.90501 0.73671 0.88607 0.93426 0.92156 0.86583 0.90354 0.91518 0.89215 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 8.78 37.16 0.33 -1.42 16 2 C 0.08 1.11 2.40 -67.73 -0.16 0.94 16 3 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -1.19 5.37 -26.65 -0.14 -1.33 16 5 C -0.11 -1.31 5.21 -26.61 -0.14 -1.45 16 6 C -0.07 -1.15 2.79 -91.69 -0.26 -1.40 16 7 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 8 C 0.47 7.68 7.63 36.01 0.27 7.96 16 9 O -0.49 -10.15 16.74 -18.75 -0.31 -10.46 16 10 O -0.52 -6.38 13.35 -39.23 -0.52 -6.91 16 11 C 0.08 1.51 3.56 -3.83 -0.01 1.50 16 12 N -0.54 -9.32 4.71 -230.58 -1.09 -10.40 16 13 C 0.33 6.36 5.31 -63.31 -0.34 6.02 16 14 N -0.39 -8.85 2.65 -65.05 -0.17 -9.02 16 15 N -0.35 -8.75 9.55 31.21 0.30 -8.46 16 16 C 0.38 9.33 7.47 -155.28 -1.16 8.17 16 17 C -0.44 -10.35 8.99 -38.20 -0.34 -10.70 16 18 H 0.10 2.05 7.08 -52.49 -0.37 1.68 16 19 C 0.08 1.78 5.49 -17.32 -0.10 1.69 16 20 N -0.73 -18.04 11.96 55.55 0.66 -17.38 16 21 Si 0.93 17.13 29.57 -169.99 -5.03 12.10 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 24 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 25 N -0.52 -11.81 3.17 -124.66 -0.39 -12.20 16 26 C 0.10 1.83 10.67 59.85 0.64 2.47 16 27 C 0.48 11.40 7.84 -86.94 -0.68 10.72 16 28 S -0.70 -17.21 29.50 -107.50 -3.17 -20.38 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.69 6.55 -51.93 -0.34 0.35 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.41 3.31 9.10 45.56 0.41 3.72 16 37 H 0.10 2.28 6.16 -51.93 -0.32 1.96 16 38 H 0.05 0.99 8.08 -51.92 -0.42 0.57 16 39 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 40 H 0.12 2.18 6.35 -51.93 -0.33 1.86 16 41 H 0.29 6.53 8.30 -40.82 -0.34 6.19 16 42 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 1.59 7.61 -51.93 -0.40 1.20 16 44 H 0.08 1.32 7.27 -51.93 -0.38 0.95 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -32.58 371.89 -11.71 -44.29 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.50 Total: 10.05 kcal Atomic # 6 Polarization: 25.25 SS G_CDS: -2.09 Total: 23.16 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.69 Total: -57.46 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.84 Total: -17.37 kcal Atomic # 14 Polarization: 17.13 SS G_CDS: -5.03 Total: 12.10 kcal Atomic # 16 Polarization: -17.21 SS G_CDS: -3.17 Total: -20.38 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.58 -11.71 -44.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589308278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.473 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds