Wall clock time and date at job start Sat Apr 11 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46240 * 2 1 4 4 C 1.53031 * 109.46043 * 119.97328 * 2 1 3 5 5 C 1.53123 * 109.27824 * 179.19284 * 4 2 1 6 6 C 1.53117 * 109.15946 * 302.34639 * 5 4 2 7 7 H 1.09002 * 109.49897 * 297.71101 * 6 5 4 8 8 C 1.50700 * 109.50209 * 177.63789 * 6 5 4 9 9 O 1.20828 * 119.99522 * 239.99812 * 8 6 5 10 10 O 1.34220 * 120.00596 * 59.99406 * 8 6 5 11 11 C 1.53032 * 109.28205 * 57.65077 * 6 5 4 12 12 N 1.46843 * 109.45863 * 240.02412 * 2 1 3 13 13 C 1.46897 * 111.00283 * 54.14678 * 12 2 1 14 14 N 1.46504 * 109.47305 * 169.99702 * 13 12 2 15 15 N 1.40169 * 126.14888 * 270.27155 * 14 13 12 16 16 C 1.32235 * 107.75905 * 180.15056 * 15 14 13 17 17 C 1.40121 * 125.92573 * 179.88238 * 16 15 14 18 18 H 1.08001 * 120.00041 * 185.89886 * 17 16 15 19 19 C 1.40037 * 119.99961 * 5.90308 * 17 16 15 20 20 N 1.30803 * 119.99978 * 6.49716 * 19 17 16 21 21 Si 1.86799 * 119.99982 * 186.50392 * 19 17 16 22 22 H 1.48496 * 109.47055 * 265.01182 * 21 19 17 23 23 H 1.48496 * 109.47234 * 25.01317 * 21 19 17 24 24 H 1.48500 * 109.46737 * 145.01248 * 21 19 17 25 25 N 1.38498 * 108.14709 * 359.62119 * 16 15 14 26 26 C 1.46500 * 125.83611 * 180.24074 * 25 16 15 27 27 C 1.34724 * 108.33087 * 0.24379 * 25 16 15 28 28 S 1.71203 * 125.97161 * 180.02562 * 27 25 16 29 29 H 1.08994 * 109.47321 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46848 * 299.97958 * 1 2 3 31 31 H 1.09000 * 109.47023 * 59.97556 * 1 2 3 32 32 H 1.08998 * 109.50563 * 299.13354 * 4 2 1 33 33 H 1.09001 * 109.50604 * 59.21022 * 4 2 1 34 34 H 1.09004 * 109.52239 * 62.24878 * 5 4 2 35 35 H 1.08998 * 109.52087 * 182.43683 * 5 4 2 36 36 H 0.96697 * 117.00450 * 180.02562 * 10 8 6 37 37 H 1.08996 * 109.46652 * 180.80213 * 11 6 5 38 38 H 1.09007 * 109.46157 * 60.83563 * 11 6 5 39 39 H 1.08998 * 109.47439 * 49.99870 * 13 12 2 40 40 H 1.08995 * 109.47360 * 289.99560 * 13 12 2 41 41 H 0.96998 * 120.00112 * 180.02562 * 20 19 17 42 42 H 1.08994 * 109.47261 * 90.00083 * 26 25 16 43 43 H 1.09000 * 109.47410 * 210.00173 * 26 25 16 44 44 H 1.09007 * 109.47091 * 329.99856 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2499 5 6 3.5710 -0.7361 1.2356 6 6 4.0547 -1.4189 -0.0467 7 1 3.7124 -2.4536 -0.0594 8 6 5.5606 -1.3865 -0.0966 9 8 6.1229 -0.8306 -1.0102 10 8 6.2771 -1.9751 0.8738 11 6 3.4864 -0.6779 -1.2591 12 7 2.0192 -0.6918 -1.1994 13 6 1.4373 -0.1106 -2.4165 14 7 2.1194 -0.6563 -3.5926 15 7 3.2593 -0.1223 -4.2092 16 6 3.5634 -0.8982 -5.2359 17 6 4.6364 -0.7122 -6.1176 18 1 4.7419 -1.3507 -6.9822 19 6 5.5721 0.3016 -5.8776 20 7 5.5189 0.9913 -4.7675 21 14 6.8963 0.6692 -7.1429 22 1 8.1353 -0.0701 -6.7917 23 1 6.4292 0.2425 -8.4864 24 1 7.1768 2.1273 -7.1564 25 7 2.6407 -1.9300 -5.2851 26 6 2.6190 -3.0151 -6.2691 27 6 1.7666 -1.7652 -4.2732 28 16 0.4400 -2.7861 -3.9142 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5135 0.8902 31 1 -0.3633 0.5142 -0.8898 32 1 1.6895 -0.1981 2.1399 33 1 1.6652 -1.7444 1.2580 34 1 3.9457 0.2870 1.2671 35 1 3.9379 -1.2863 2.1020 36 1 7.2400 -1.9278 0.7988 37 1 3.8174 -1.1700 -2.1736 38 1 3.8403 0.3532 -1.2532 39 1 1.5587 0.9723 -2.3961 40 1 0.3765 -0.3564 -2.4652 41 1 6.1668 1.6938 -4.6014 42 1 3.2146 -3.8507 -5.9017 43 1 1.5914 -3.3427 -6.4261 44 1 3.0349 -2.6591 -7.2117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589308278.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:31 Heat of formation + Delta-G solvation = -27.058369 kcal Electronic energy + Delta-G solvation = -29142.425165 eV Core-core repulsion = 25221.669001 eV Total energy + Delta-G solvation = -3920.756164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.72620 -41.66805 -40.01785 -37.19965 -36.57418 -35.72046 -34.58471 -33.38802 -32.25726 -29.49856 -28.63572 -28.29380 -26.81784 -24.88438 -23.99558 -22.91651 -22.64297 -21.92043 -20.76288 -19.49534 -19.07440 -18.46906 -18.05267 -17.46517 -17.30914 -16.83264 -16.67472 -16.51409 -16.11117 -15.66781 -15.41674 -15.00420 -14.94266 -14.49799 -14.32345 -13.89755 -13.81364 -13.53014 -13.48668 -13.39392 -13.08775 -13.00197 -12.83621 -12.72100 -12.62958 -12.45003 -12.23299 -12.04229 -12.00545 -11.80531 -11.72714 -11.46303 -11.38502 -11.27713 -10.90606 -10.68049 -9.48341 -8.80292 -8.61837 -8.55330 -6.97233 0.51729 0.81764 1.11429 1.25194 1.40356 1.56642 1.65689 1.81845 1.90141 2.10019 2.40304 2.85300 3.07942 3.45994 3.57395 3.66960 3.82488 3.97845 4.03038 4.11579 4.16489 4.34300 4.36905 4.43670 4.48636 4.58772 4.65268 4.67854 4.73938 4.84035 4.88816 4.93722 4.99209 5.01744 5.07232 5.13523 5.26046 5.28362 5.42313 5.52177 5.66932 5.77120 5.92759 6.18926 6.47575 6.55035 6.91832 7.31403 8.21947 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009206 B = 0.005408 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3040.764414 B = 5176.126422 C = 7033.334738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.076 3.924 3 H 0.042 0.958 4 C -0.099 4.099 5 C -0.101 4.101 6 C -0.072 4.072 7 H 0.115 0.885 8 C 0.483 3.517 9 O -0.546 6.546 10 O -0.503 6.503 11 C 0.099 3.901 12 N -0.540 5.540 13 C 0.328 3.672 14 N -0.381 5.381 15 N -0.372 5.372 16 C 0.355 3.645 17 C -0.453 4.453 18 H 0.118 0.882 19 C 0.035 3.965 20 N -0.769 5.769 21 Si 1.003 2.997 22 H -0.265 1.265 23 H -0.242 1.242 24 H -0.272 1.272 25 N -0.518 5.518 26 C 0.096 3.904 27 C 0.467 3.533 28 S -0.727 6.727 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.426 0.574 37 H 0.042 0.958 38 H 0.018 0.982 39 H 0.060 0.940 40 H 0.120 0.880 41 H 0.288 0.712 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.337 0.116 9.794 9.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 H 0.060 0.940 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.092 4.092 7 H 0.133 0.867 8 C 0.326 3.674 9 O -0.435 6.435 10 O -0.316 6.316 11 C -0.030 4.030 12 N -0.267 5.267 13 C 0.118 3.882 14 N -0.167 5.167 15 N -0.204 5.204 16 C 0.107 3.893 17 C -0.495 4.495 18 H 0.136 0.864 19 C -0.189 4.189 20 N -0.393 5.393 21 Si 0.822 3.178 22 H -0.190 1.190 23 H -0.165 1.165 24 H -0.197 1.197 25 N -0.219 5.219 26 C -0.046 4.046 27 C 0.096 3.904 28 S -0.603 6.603 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.287 0.713 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.078 0.922 40 H 0.137 0.863 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.428 0.234 10.568 10.580 hybrid contribution 2.108 0.940 -1.514 2.760 sum 2.535 1.174 9.054 9.475 Atomic orbital electron populations 1.21882 0.92301 1.03060 1.02766 1.21913 0.96983 0.95363 0.88911 0.93954 1.21638 0.93246 1.02336 0.96445 1.21598 0.97380 1.00508 0.94372 1.21015 0.85895 1.03881 0.98403 0.86709 1.23603 0.91820 0.73663 0.78312 1.90846 1.73613 1.42947 1.36119 1.84457 1.26941 1.71646 1.48552 1.21409 0.87183 0.97761 0.96639 1.62182 1.06258 1.56085 1.02196 1.22000 0.95464 0.94191 0.76552 1.49407 1.23644 1.19356 1.24283 1.79307 1.03187 1.23142 1.14761 1.21660 0.90608 0.83125 0.93914 1.18871 1.04928 1.17158 1.08494 0.86397 1.26885 1.00373 0.93813 0.97815 1.69983 1.31641 1.14746 1.22917 0.84855 0.76456 0.78273 0.78222 1.19009 1.16525 1.19662 1.46285 1.24170 1.25294 1.26183 1.22022 1.04840 0.87157 0.90555 1.22925 0.91997 0.89367 0.86092 1.92594 1.27297 1.54222 1.86191 0.91870 0.88956 0.93412 0.87176 0.90309 0.91825 0.87779 0.71291 0.93902 0.96363 0.92230 0.86251 0.90131 0.90416 0.88971 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.78 71.98 0.63 -2.48 16 2 C 0.08 1.93 2.40 44.94 0.11 2.04 16 3 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 4 C -0.10 -1.93 5.37 30.65 0.16 -1.77 16 5 C -0.10 -2.19 5.21 30.67 0.16 -2.03 16 6 C -0.07 -2.23 2.79 -11.49 -0.03 -2.26 16 7 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 8 C 0.48 15.70 7.63 71.24 0.54 16.25 16 9 O -0.55 -23.52 16.74 21.96 0.37 -23.16 16 10 O -0.50 -11.42 13.35 -51.32 -0.69 -12.11 16 11 C 0.10 3.92 3.56 86.32 0.31 4.23 16 12 N -0.54 -19.07 4.71 -883.41 -4.16 -23.23 16 13 C 0.33 13.10 5.31 170.81 0.91 14.01 16 14 N -0.38 -18.27 2.65 -359.73 -0.95 -19.23 16 15 N -0.37 -19.68 9.55 -55.17 -0.53 -20.21 16 16 C 0.36 18.09 7.47 133.53 1.00 19.08 16 17 C -0.45 -21.55 8.99 23.16 0.21 -21.34 16 18 H 0.12 4.90 7.08 -2.91 -0.02 4.87 16 19 C 0.03 1.61 5.49 85.28 0.47 2.08 16 20 N -0.77 -39.43 11.96 21.84 0.26 -39.17 16 21 Si 1.00 34.63 29.57 68.60 2.03 36.66 16 22 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16 23 H -0.24 -7.68 7.11 99.48 0.71 -6.97 16 24 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 25 N -0.52 -24.14 3.17 -548.31 -1.74 -25.88 16 26 C 0.10 3.43 10.67 127.77 1.36 4.80 16 27 C 0.47 22.83 7.84 179.06 1.40 24.24 16 28 S -0.73 -36.06 29.50 -56.49 -1.67 -37.73 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.12 6.55 -2.39 -0.02 1.10 16 32 H 0.11 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 1.41 8.14 -2.38 -0.02 1.40 16 35 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.43 6.17 9.10 -74.06 -0.67 5.49 16 37 H 0.04 2.17 6.16 -2.39 -0.01 2.15 16 38 H 0.02 0.81 8.08 -2.38 -0.02 0.79 16 39 H 0.06 2.34 8.08 -2.39 -0.02 2.32 16 40 H 0.12 4.65 6.35 -2.39 -0.02 4.63 16 41 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 42 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.09 3.26 7.61 -2.39 -0.02 3.24 16 44 H 0.11 3.27 7.27 -2.38 -0.02 3.25 16 Total: -1.00 -74.64 371.89 0.52 -74.12 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.36 Total: 33.08 kcal Atomic # 6 Polarization: 49.62 SS G_CDS: 7.23 Total: 56.85 kcal Atomic # 7 Polarization: -120.59 SS G_CDS: -7.12 Total: -127.71 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -0.32 Total: -35.27 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Atomic # 16 Polarization: -36.06 SS G_CDS: -1.67 Total: -37.73 kcal Total: -74.64 0.52 -74.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589308278.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.065 kcal (2) G-P(sol) polarization free energy of solvation -74.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds