Wall clock time and date at job start Sat Apr 11 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.45420 * 2 1 4 4 C 1.53035 * 109.46626 * 119.97503 * 2 1 3 5 5 C 1.53126 * 109.27742 * 60.83345 * 4 2 1 6 6 C 1.53118 * 109.15800 * 57.65875 * 5 4 2 7 7 H 1.08999 * 109.54025 * 62.30613 * 6 5 4 8 8 C 1.50698 * 109.50077 * 182.40449 * 6 5 4 9 9 O 1.20831 * 120.00248 * 119.80078 * 8 6 5 10 10 O 1.34227 * 120.00170 * 299.80040 * 8 6 5 11 11 C 1.53039 * 109.27919 * 302.34051 * 6 5 4 12 12 N 1.46853 * 109.51945 * 59.18469 * 11 6 5 13 13 C 1.46904 * 110.99959 * 174.16245 * 12 11 6 14 14 N 1.46498 * 109.46662 * 294.90987 * 13 12 11 15 15 N 1.40167 * 126.14965 * 93.03843 * 14 13 12 16 16 C 1.32237 * 107.76174 * 180.02562 * 15 14 13 17 17 C 1.40117 * 125.93050 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00219 * 180.02562 * 17 16 15 19 19 C 1.40045 * 119.99458 * 359.75161 * 17 16 15 20 20 N 1.30798 * 119.99966 * 0.27642 * 19 17 16 21 21 Si 1.86804 * 119.99739 * 180.27421 * 19 17 16 22 22 H 1.48498 * 109.46785 * 60.00369 * 21 19 17 23 23 H 1.48495 * 109.46640 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47221 * 300.00129 * 21 19 17 25 25 N 1.38508 * 108.14647 * 0.24356 * 16 15 14 26 26 C 1.46499 * 125.83395 * 179.75016 * 25 16 15 27 27 C 1.34730 * 108.32668 * 359.59977 * 25 16 15 28 28 S 1.71196 * 125.97046 * 180.12665 * 27 25 16 29 29 H 1.08996 * 109.47174 * 181.52420 * 1 2 3 30 30 H 1.09002 * 109.46695 * 301.52596 * 1 2 3 31 31 H 1.08996 * 109.47277 * 61.52563 * 1 2 3 32 32 H 1.09000 * 109.50080 * 300.89607 * 4 2 1 33 33 H 1.08995 * 109.53820 * 180.79526 * 4 2 1 34 34 H 1.08997 * 109.52293 * 297.75467 * 5 4 2 35 35 H 1.08999 * 109.57306 * 177.58895 * 5 4 2 36 36 H 0.96696 * 117.00230 * 180.02562 * 10 8 6 37 37 H 1.09001 * 109.46735 * 299.17188 * 11 6 5 38 38 H 1.09003 * 109.46476 * 179.19793 * 11 6 5 39 39 H 1.08997 * 109.47027 * 174.91209 * 13 12 11 40 40 H 1.09001 * 109.47289 * 54.90706 * 13 12 11 41 41 H 0.96998 * 119.99548 * 179.97438 * 20 19 17 42 42 H 1.09008 * 109.46737 * 90.00423 * 26 25 16 43 43 H 1.09004 * 109.47208 * 210.00134 * 26 25 16 44 44 H 1.08993 * 109.47453 * 330.00625 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7209 1.2499 5 6 1.5443 -2.1696 1.2355 6 6 2.0269 -2.8532 -0.0468 7 1 3.1166 -2.8757 -0.0600 8 6 1.4940 -4.2619 -0.0972 9 8 0.7796 -4.6053 -1.0092 10 8 1.8128 -5.1351 0.8710 11 6 1.5173 -2.0705 -1.2592 12 7 2.0193 -0.6917 -1.1995 13 6 1.6650 0.0507 -2.4166 14 7 2.3518 -0.5417 -3.5671 15 7 1.8368 -1.5279 -4.4196 16 6 2.7580 -1.7955 -5.3298 17 6 2.6401 -2.7269 -6.3699 18 1 3.4564 -2.8693 -7.0624 19 6 1.4657 -3.4773 -6.5079 20 7 0.4770 -3.3048 -5.6691 21 14 1.3113 -4.7246 -7.8899 22 1 2.3777 -5.7490 -7.7534 23 1 -0.0186 -5.3811 -7.8177 24 1 1.4520 -4.0347 -9.1973 25 7 3.8621 -0.9996 -5.0731 26 6 5.1081 -0.9870 -5.8435 27 6 3.5930 -0.2366 -3.9957 28 16 4.6462 0.9138 -3.2898 29 1 -0.3633 -1.0273 0.0273 30 1 -0.3633 0.5374 0.8760 31 1 -0.3633 0.4899 -0.9033 32 1 1.6638 -0.2164 2.1399 33 1 3.1298 -0.7092 1.2582 34 1 0.4548 -2.1822 1.2671 35 1 1.9401 -2.6996 2.1019 36 1 1.4474 -6.0272 0.7954 37 1 0.4273 -2.0607 -1.2532 38 1 1.8711 -2.5465 -2.1737 39 1 1.9690 1.0918 -2.3085 40 1 0.5873 0.0010 -2.5718 41 1 -0.3365 -3.8243 -5.7650 42 1 5.0320 -0.2525 -6.6453 43 1 5.9382 -0.7242 -5.1876 44 1 5.2812 -1.9746 -6.2707 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589308279.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:35 Heat of formation + Delta-G solvation = -27.907489 kcal Electronic energy + Delta-G solvation = -29032.685033 eV Core-core repulsion = 25111.892048 eV Total energy + Delta-G solvation = -3920.792985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.65871 -41.76795 -40.20434 -37.20493 -36.57330 -35.71291 -34.39518 -33.11467 -32.23632 -29.56194 -28.48314 -28.27948 -26.66853 -25.41833 -24.31471 -22.95809 -22.62592 -22.16500 -19.78435 -19.48876 -19.07493 -18.48149 -18.03136 -17.42966 -17.33864 -16.83103 -16.56776 -16.50189 -16.44364 -15.59376 -15.36048 -15.11302 -14.91235 -14.43781 -14.27315 -13.92499 -13.80909 -13.67145 -13.46536 -13.34541 -13.30112 -13.01022 -12.88393 -12.66341 -12.62322 -12.41937 -12.19952 -12.07118 -12.02610 -11.77072 -11.60923 -11.42780 -11.33611 -11.29138 -10.89196 -10.65590 -9.44389 -8.79636 -8.61287 -8.51507 -6.97369 0.55647 0.85506 1.10021 1.27903 1.40995 1.55321 1.68954 1.84067 1.91403 2.10838 2.42577 2.91776 3.09296 3.48144 3.57681 3.70405 3.83830 3.97544 4.04853 4.09594 4.16208 4.34040 4.43550 4.45986 4.47972 4.57139 4.59853 4.67074 4.71028 4.72333 4.89759 4.92200 5.01253 5.03943 5.07949 5.13253 5.21442 5.28037 5.45016 5.51474 5.72362 5.77696 5.95425 6.20900 6.49028 6.56021 6.91005 7.34342 8.22610 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009338 B = 0.005161 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2997.839425 B = 5424.355006 C = 7329.832338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.079 3.921 3 H 0.098 0.902 4 C -0.099 4.099 5 C -0.101 4.101 6 C -0.072 4.072 7 H 0.110 0.890 8 C 0.487 3.513 9 O -0.549 6.549 10 O -0.503 6.503 11 C 0.086 3.914 12 N -0.541 5.541 13 C 0.328 3.672 14 N -0.376 5.376 15 N -0.370 5.370 16 C 0.353 3.647 17 C -0.452 4.452 18 H 0.118 0.882 19 C 0.034 3.966 20 N -0.773 5.773 21 Si 1.003 2.997 22 H -0.254 1.254 23 H -0.275 1.275 24 H -0.250 1.250 25 N -0.519 5.519 26 C 0.096 3.904 27 C 0.467 3.533 28 S -0.730 6.730 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.426 0.574 37 H 0.035 0.965 38 H 0.044 0.956 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.289 0.711 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 -2.798 10.110 10.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.028 4.028 3 H 0.116 0.884 4 C -0.137 4.137 5 C -0.139 4.139 6 C -0.092 4.092 7 H 0.128 0.872 8 C 0.330 3.670 9 O -0.440 6.440 10 O -0.316 6.316 11 C -0.042 4.042 12 N -0.267 5.267 13 C 0.117 3.883 14 N -0.162 5.162 15 N -0.203 5.203 16 C 0.104 3.896 17 C -0.493 4.493 18 H 0.136 0.864 19 C -0.189 4.189 20 N -0.398 5.398 21 Si 0.822 3.178 22 H -0.178 1.178 23 H -0.200 1.200 24 H -0.173 1.173 25 N -0.220 5.220 26 C -0.046 4.046 27 C 0.096 3.904 28 S -0.606 6.606 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.288 0.712 37 H 0.053 0.947 38 H 0.062 0.938 39 H 0.131 0.869 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.736 -2.080 10.835 11.169 hybrid contribution -1.119 -1.537 -1.665 2.527 sum -2.855 -3.618 9.171 10.264 Atomic orbital electron populations 1.22504 0.96440 1.02213 1.03179 1.21897 0.93518 0.98853 0.88553 0.88418 1.21586 1.01754 0.93740 0.96597 1.21621 1.01469 0.96586 0.94195 1.20994 1.02769 0.86834 0.98557 0.87225 1.23571 0.76605 0.88645 0.78157 1.90796 1.37207 1.79760 1.36202 1.84468 1.71181 1.27271 1.48671 1.21572 0.97142 0.88740 0.96723 1.61906 1.60778 1.01769 1.02276 1.21779 0.93633 0.94975 0.77865 1.49471 1.10514 1.31824 1.24400 1.79330 1.19028 1.13327 1.08597 1.21670 0.80767 0.91663 0.95479 1.18860 1.03636 1.16970 1.09864 0.86372 1.26894 0.93645 0.98922 0.99461 1.69976 1.04305 1.33308 1.32179 0.84906 0.78634 0.77062 0.77165 1.17822 1.20001 1.17335 1.46258 1.17140 1.33279 1.25276 1.22019 0.82155 1.04760 0.95641 1.22901 0.88945 0.91462 0.87063 1.92568 1.53696 1.40932 1.73451 0.92956 0.88767 0.93618 0.87203 0.91000 0.90940 0.88169 0.71202 0.94671 0.93760 0.86873 0.91705 0.90054 0.89991 0.89232 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.05 8.21 71.98 0.59 -3.46 16 2 C 0.08 1.95 2.92 44.94 0.13 2.08 16 3 H 0.10 2.32 8.02 -2.39 -0.02 2.30 16 4 C -0.10 -1.89 5.61 30.65 0.17 -1.72 16 5 C -0.10 -2.05 4.91 30.68 0.15 -1.90 16 6 C -0.07 -2.10 2.79 -11.49 -0.03 -2.13 16 7 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 8 C 0.49 14.75 7.63 71.24 0.54 15.29 16 9 O -0.55 -21.90 16.74 21.95 0.37 -21.54 16 10 O -0.50 -10.62 13.36 -51.38 -0.69 -11.31 16 11 C 0.09 3.22 3.66 86.33 0.32 3.53 16 12 N -0.54 -18.67 4.75 -883.35 -4.19 -22.86 16 13 C 0.33 12.94 5.36 170.81 0.92 13.86 16 14 N -0.38 -17.96 3.25 -359.72 -1.17 -19.12 16 15 N -0.37 -19.57 9.81 -55.17 -0.54 -20.11 16 16 C 0.35 17.86 7.50 133.52 1.00 18.86 16 17 C -0.45 -21.30 8.98 23.16 0.21 -21.09 16 18 H 0.12 4.84 7.12 -2.91 -0.02 4.82 16 19 C 0.03 1.56 5.50 85.29 0.47 2.03 16 20 N -0.77 -39.28 11.90 21.85 0.26 -39.02 16 21 Si 1.00 34.27 29.56 68.60 2.03 36.29 16 22 H -0.25 -8.31 7.11 99.48 0.71 -7.61 16 23 H -0.28 -9.34 7.11 99.48 0.71 -8.63 16 24 H -0.25 -7.99 7.11 99.48 0.71 -7.29 16 25 N -0.52 -24.00 3.17 -548.30 -1.74 -25.73 16 26 C 0.10 3.40 10.64 127.77 1.36 4.76 16 27 C 0.47 22.75 7.84 179.06 1.40 24.15 16 28 S -0.73 -36.08 29.56 -56.49 -1.67 -37.75 16 29 H 0.05 1.27 4.80 -2.39 -0.01 1.25 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.11 6.68 -2.39 -0.02 1.09 16 32 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.43 6.52 -2.39 -0.02 1.41 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.43 5.43 9.10 -74.06 -0.67 4.76 16 37 H 0.04 1.37 6.16 -2.39 -0.01 1.35 16 38 H 0.04 2.14 6.62 -2.39 -0.02 2.13 16 39 H 0.11 4.33 7.60 -2.39 -0.02 4.31 16 40 H 0.07 2.54 6.89 -2.39 -0.02 2.52 16 41 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 42 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 43 H 0.09 3.18 7.62 -2.38 -0.02 3.16 16 44 H 0.10 3.22 7.32 -2.39 -0.02 3.20 16 Total: -1.00 -73.74 366.57 0.27 -73.48 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.38 Total: 33.41 kcal Atomic # 6 Polarization: 47.04 SS G_CDS: 7.23 Total: 54.27 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -7.38 Total: -126.85 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.32 Total: -32.85 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.29 kcal Atomic # 16 Polarization: -36.08 SS G_CDS: -1.67 Total: -37.75 kcal Total: -73.74 0.27 -73.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589308279.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.570 kcal (2) G-P(sol) polarization free energy of solvation -73.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds